Wall clock time and date at job start Sat Apr 11 2020 06:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.46874 * 2 1 4 4 C 1.42899 * 114.00025 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47208 * 29.99296 * 4 3 2 6 6 C 1.50705 * 109.46941 * 270.00103 * 4 3 2 7 7 O 1.21277 * 120.00012 * 344.70049 * 6 4 3 8 8 N 1.34775 * 120.00288 * 164.70922 * 6 4 3 9 9 C 1.46505 * 119.99809 * 354.65622 * 8 6 4 10 10 C 1.46498 * 120.00198 * 174.65802 * 8 6 4 11 11 C 1.53774 * 113.61380 * 239.99740 * 10 8 6 12 12 C 1.53780 * 87.08117 * 219.93508 * 11 10 8 13 13 N 1.46505 * 113.61788 * 270.80140 * 12 11 10 14 14 C 1.36936 * 120.00158 * 203.47157 * 13 12 11 15 15 H 1.08001 * 119.99896 * 359.97438 * 14 13 12 16 16 C 1.38815 * 119.99661 * 179.97438 * 14 13 12 17 17 N 1.31620 * 120.00127 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99780 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47161 * 90.00346 * 18 16 14 20 20 H 1.48502 * 109.47408 * 210.00307 * 18 16 14 21 21 H 1.48498 * 109.47439 * 330.00388 * 18 16 14 22 22 C 1.53782 * 87.17351 * 25.39445 * 12 11 10 23 23 C 1.52998 * 109.47603 * 149.99804 * 4 3 2 24 24 C 1.53184 * 109.54064 * 54.01304 * 23 4 3 25 25 C 1.53095 * 109.16105 * 183.15213 * 24 23 4 26 26 O 1.42904 * 109.41331 * 57.60997 * 25 24 23 27 27 C 1.42899 * 114.09739 * 298.83895 * 26 25 24 28 28 C 1.53090 * 109.41500 * 61.15930 * 27 26 25 29 29 H 1.08997 * 109.46883 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47098 * 299.99950 * 1 2 3 31 31 H 1.08998 * 109.46758 * 59.99965 * 1 2 3 32 32 H 1.09003 * 109.47247 * 240.00309 * 2 1 3 33 33 H 1.08994 * 109.47415 * 119.99708 * 2 1 3 34 34 H 1.08997 * 109.47389 * 274.90063 * 9 8 6 35 35 H 1.09003 * 109.47269 * 34.89793 * 9 8 6 36 36 H 1.09002 * 109.47003 * 154.90131 * 9 8 6 37 37 H 1.08999 * 112.84795 * 11.19633 * 10 8 6 38 38 H 1.09001 * 113.61516 * 105.39050 * 11 10 8 39 39 H 1.08999 * 113.62070 * 334.48168 * 11 10 8 40 40 H 1.09009 * 113.61544 * 139.98084 * 12 11 10 41 41 H 0.96996 * 119.99610 * 23.46818 * 13 12 11 42 42 H 0.96995 * 119.99532 * 179.97438 * 17 16 14 43 43 H 1.08991 * 113.61562 * 89.15977 * 22 12 11 44 44 H 1.08997 * 113.61220 * 220.06449 * 22 12 11 45 45 H 1.09000 * 109.54310 * 174.27754 * 23 4 3 46 46 H 1.08997 * 109.52488 * 303.05792 * 24 23 4 47 47 H 1.08996 * 109.51971 * 63.25021 * 24 23 4 48 48 H 1.08997 * 109.48086 * 297.62846 * 25 24 23 49 49 H 1.09001 * 109.47959 * 177.59311 * 25 24 23 50 50 H 1.09004 * 109.48279 * 301.17545 * 27 26 25 51 51 H 1.09009 * 109.48177 * 181.14319 * 27 26 25 52 52 H 1.09005 * 109.52243 * 182.48295 * 28 27 26 53 53 H 1.09005 * 109.57729 * 62.32834 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8631 0.6017 -0.5146 6 6 3.9322 1.4996 1.4201 7 8 3.1600 1.7163 2.3298 8 7 5.2386 1.2944 1.6797 9 6 6.1503 0.9176 0.5964 10 6 5.7472 1.4480 3.0449 11 6 6.8369 2.5247 3.1788 12 6 7.5550 1.5661 4.1433 13 7 7.1522 1.7303 5.5423 14 6 7.9921 1.3325 6.5480 15 1 8.9515 0.8973 6.3098 16 6 7.6106 1.4886 7.8735 17 7 6.4412 2.0186 8.1636 18 14 8.7561 0.9453 9.2453 19 1 9.6421 2.0744 9.6266 20 1 7.9543 0.5258 10.4228 21 1 9.5825 -0.1962 8.7772 22 6 6.8275 0.4183 3.4234 23 6 3.8403 2.7459 -0.7218 24 6 3.1151 3.9395 -0.0927 25 6 3.4698 5.2097 -0.8703 26 8 3.1125 5.0413 -2.2436 27 6 3.7951 3.9692 -2.8969 28 6 3.4536 2.6492 -2.2007 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 6.1180 -0.1625 0.4535 35 1 5.8458 1.4152 -0.3244 36 1 7.1653 1.2197 0.8542 37 1 4.9521 1.5369 3.7852 38 1 6.4885 3.4418 3.6537 39 1 7.3862 2.7073 2.2553 40 1 8.6372 1.5462 4.0141 41 1 6.2905 2.1209 5.7562 42 1 6.1746 2.1273 9.0899 43 1 7.3741 0.0241 2.5669 44 1 6.4713 -0.3624 4.0955 45 1 4.9179 2.8852 -0.6351 46 1 2.0384 3.7752 -0.1351 47 1 3.4272 4.0491 0.9458 48 1 4.5411 5.3956 -0.7936 49 1 2.9232 6.0556 -0.4535 50 1 4.8707 4.1389 -2.8467 51 1 3.4828 3.9215 -3.9402 52 1 4.0076 1.8360 -2.6698 53 1 2.3839 2.4576 -2.2857 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734597289.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:38 Heat of formation + Delta-G solvation = -117.637325 kcal Electronic energy + Delta-G solvation = -31655.444218 eV Core-core repulsion = 27527.380822 eV Total energy + Delta-G solvation = -4128.063396 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.83919 -40.42855 -39.51823 -38.34416 -36.33489 -35.39525 -34.60020 -32.09295 -32.01085 -31.80582 -29.09623 -28.02912 -26.59131 -26.24199 -25.12392 -24.56623 -23.77868 -23.65062 -21.12394 -20.83453 -19.70854 -19.35445 -18.43778 -17.97353 -17.44773 -17.18897 -16.78779 -16.68277 -16.35440 -16.07934 -15.79366 -15.72521 -15.60234 -15.27848 -15.00969 -14.75531 -14.37329 -14.22608 -14.01692 -13.47909 -13.39022 -13.35375 -13.23471 -13.20076 -13.16243 -12.97047 -12.87420 -12.78469 -12.51918 -12.25141 -12.17511 -12.13115 -12.03754 -11.85404 -11.74659 -11.65392 -11.31525 -11.20362 -11.17750 -10.92647 -10.53969 -10.16310 -9.58460 -9.06535 -7.97365 -5.28008 1.45727 1.48123 1.49833 1.56596 1.89643 2.53673 2.63101 2.99993 3.34478 3.35220 3.55568 3.62103 3.71349 3.83673 3.84281 3.91528 4.01182 4.09985 4.14499 4.18118 4.24798 4.29943 4.31959 4.34585 4.41786 4.43545 4.59647 4.62136 4.69646 4.72598 4.75585 4.76996 4.80370 4.82574 4.89787 4.92761 4.98224 5.03774 5.08826 5.14646 5.19331 5.21557 5.22107 5.30716 5.41989 5.50309 5.68616 6.03980 6.24352 6.30369 6.44729 7.15871 7.28564 8.04520 8.26175 9.26326 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015187 B = 0.002597 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.284535 B =10780.135822 C =11491.237653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 O -0.372 6.372 4 C 0.090 3.910 5 H 0.117 0.883 6 C 0.479 3.521 7 O -0.582 6.582 8 N -0.597 5.597 9 C 0.056 3.944 10 C 0.127 3.873 11 C -0.145 4.145 12 C 0.153 3.847 13 N -0.726 5.726 14 C -0.242 4.242 15 H 0.085 0.915 16 C -0.081 4.081 17 N -0.974 5.974 18 Si 0.978 3.022 19 H -0.285 1.285 20 H -0.300 1.300 21 H -0.265 1.265 22 C -0.160 4.160 23 C -0.077 4.077 24 C -0.143 4.143 25 C 0.066 3.934 26 O -0.404 6.404 27 C 0.054 3.946 28 C -0.140 4.140 29 H 0.091 0.909 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.027 0.973 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.122 0.878 40 H 0.081 0.919 41 H 0.369 0.631 42 H 0.250 0.750 43 H 0.117 0.883 44 H 0.040 0.960 45 H 0.108 0.892 46 H 0.060 0.940 47 H 0.045 0.955 48 H 0.064 0.936 49 H 0.092 0.908 50 H 0.067 0.933 51 H 0.110 0.890 52 H 0.106 0.894 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.798 -2.477 -30.491 30.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.027 4.027 3 O -0.289 6.289 4 C 0.028 3.972 5 H 0.134 0.866 6 C 0.267 3.733 7 O -0.461 6.461 8 N -0.330 5.330 9 C -0.085 4.085 10 C 0.023 3.977 11 C -0.185 4.185 12 C 0.042 3.958 13 N -0.363 5.363 14 C -0.373 4.373 15 H 0.103 0.897 16 C -0.273 4.273 17 N -0.625 5.625 18 Si 0.806 3.194 19 H -0.212 1.212 20 H -0.227 1.227 21 H -0.189 1.189 22 C -0.202 4.202 23 C -0.096 4.096 24 C -0.181 4.181 25 C -0.010 4.010 26 O -0.323 6.323 27 C -0.022 4.022 28 C -0.178 4.178 29 H 0.110 0.890 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.046 0.954 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.140 0.860 40 H 0.099 0.901 41 H 0.200 0.800 42 H 0.059 0.941 43 H 0.135 0.865 44 H 0.059 0.941 45 H 0.126 0.874 46 H 0.079 0.921 47 H 0.064 0.936 48 H 0.082 0.918 49 H 0.110 0.890 50 H 0.085 0.915 51 H 0.128 0.872 52 H 0.125 0.875 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.312 -2.174 -30.029 30.289 hybrid contribution -0.091 -0.415 2.208 2.248 sum -3.402 -2.589 -27.821 28.148 Atomic orbital electron populations 1.21717 0.92817 1.03342 1.02480 1.22747 0.96711 0.82948 1.00334 1.88006 1.19014 1.27708 1.94212 1.22170 0.83195 1.01701 0.90126 0.86575 1.22182 0.82176 0.75897 0.93001 1.90707 1.56548 1.50011 1.48842 1.48056 1.08108 1.67666 1.09195 1.22312 0.95143 1.01896 0.89165 1.22282 0.94119 0.98020 0.83243 1.23810 0.97126 0.96901 1.00676 1.21246 0.97316 0.94328 0.82900 1.42446 1.19753 1.73355 1.00744 1.19726 0.98805 1.32153 0.86643 0.89700 1.25682 0.98825 1.02739 1.00025 1.69859 1.22600 1.52077 1.17918 0.85075 0.77670 0.78139 0.78480 1.21202 1.22659 1.18911 1.24146 0.97495 0.97659 1.00864 1.21397 1.01059 0.91175 0.95930 1.22039 1.01396 0.95981 0.98723 1.22554 1.00421 0.96714 0.81357 1.87913 1.67679 1.52982 1.23726 1.22814 0.97121 0.85102 0.97129 1.22203 1.03232 0.99695 0.92632 0.89044 0.93948 0.91015 0.90120 0.95444 0.90706 0.88447 0.88627 0.91862 0.93523 0.85988 0.90129 0.79958 0.94100 0.86484 0.94133 0.87388 0.92113 0.93574 0.91790 0.89016 0.91470 0.87162 0.87518 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 10.28 71.98 0.74 -1.86 16 2 C 0.05 0.97 6.46 71.98 0.46 1.43 16 3 O -0.37 -9.14 8.12 -130.40 -1.06 -10.20 16 4 C 0.09 1.81 1.37 29.85 0.04 1.85 16 5 H 0.12 1.49 6.98 -2.39 -0.02 1.47 16 6 C 0.48 14.25 6.01 87.66 0.53 14.78 16 7 O -0.58 -24.60 16.05 15.56 0.25 -24.35 16 8 N -0.60 -15.19 3.08 -819.31 -2.53 -17.72 16 9 C 0.06 0.72 8.51 127.77 1.09 1.81 16 10 C 0.13 4.30 4.10 45.58 0.19 4.49 16 11 C -0.15 -4.58 7.34 31.12 0.23 -4.35 16 12 C 0.15 5.77 4.55 45.52 0.21 5.98 16 13 N -0.73 -37.40 5.31 -320.42 -1.70 -39.10 16 14 C -0.24 -13.47 9.97 84.03 0.84 -12.63 16 15 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 16 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 17 N -0.97 -61.92 13.06 21.65 0.28 -61.64 16 18 Si 0.98 46.63 29.55 68.60 2.03 48.65 16 19 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 20 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 21 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 22 C -0.16 -5.19 7.30 31.18 0.23 -4.96 16 23 C -0.08 -1.25 1.74 -10.68 -0.02 -1.27 16 24 C -0.14 -3.27 5.03 30.69 0.15 -3.11 16 25 C 0.07 1.25 6.84 72.01 0.49 1.74 16 26 O -0.40 -7.79 10.77 -148.98 -1.60 -9.39 16 27 C 0.05 0.63 6.84 72.01 0.49 1.12 16 28 C -0.14 -1.58 5.35 30.68 0.16 -1.42 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 33 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 35 H 0.10 0.71 4.85 -2.39 -0.01 0.70 16 36 H 0.10 1.03 6.16 -2.39 -0.01 1.01 16 37 H 0.06 2.86 7.21 -2.39 -0.02 2.84 16 38 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.12 2.74 6.99 -2.39 -0.02 2.72 16 40 H 0.08 2.83 8.11 -2.38 -0.02 2.81 16 41 H 0.37 21.24 7.90 -92.71 -0.73 20.51 16 42 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 43 H 0.12 2.71 6.63 -2.39 -0.02 2.70 16 44 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.11 1.34 6.24 -2.39 -0.01 1.32 16 46 H 0.06 1.66 7.44 -2.39 -0.02 1.65 16 47 H 0.05 1.31 7.53 -2.39 -0.02 1.29 16 48 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 51 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 52 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 53 H 0.07 1.02 7.77 -2.38 -0.02 1.00 16 Total: -1.00 -81.43 410.22 2.13 -79.31 By element: Atomic # 1 Polarization: 34.95 SS G_CDS: 0.16 Total: 35.11 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 6.30 Total: -0.67 kcal Atomic # 7 Polarization: -114.52 SS G_CDS: -3.95 Total: -118.46 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -2.41 Total: -43.95 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -81.43 2.13 -79.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734597289.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.332 kcal (2) G-P(sol) polarization free energy of solvation -81.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds