Wall clock time and date at job start Sat Apr 11 2020 06:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47524 * 2 1 4 4 C 1.42898 * 114.00065 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46718 * 180.02562 * 4 3 2 6 6 O 1.42905 * 109.47205 * 65.00251 * 5 4 3 7 7 C 1.42898 * 113.99849 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.47422 * 329.99944 * 7 6 5 9 9 C 1.52998 * 109.46964 * 89.99873 * 7 6 5 10 10 C 1.50698 * 109.47175 * 209.99658 * 7 6 5 11 11 O 1.21277 * 119.99919 * 355.00592 * 10 7 6 12 12 N 1.34778 * 120.00394 * 175.00050 * 10 7 6 13 13 C 1.46891 * 120.46588 * 180.02562 * 12 10 7 14 14 C 1.53358 * 108.74312 * 124.38885 * 13 12 10 15 15 C 1.52552 * 109.12612 * 52.25741 * 14 13 12 16 16 C 1.52963 * 114.06004 * 75.53976 * 15 14 13 17 17 N 1.47166 * 87.85376 * 139.44077 * 16 15 14 18 18 C 1.36936 * 136.00143 * 153.08248 * 17 16 15 19 19 H 1.07994 * 119.99869 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99903 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99863 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00052 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46936 * 89.99757 * 22 20 18 24 24 H 1.48502 * 109.47124 * 209.99971 * 22 20 18 25 25 H 1.48502 * 109.46908 * 329.99946 * 22 20 18 26 26 C 1.47170 * 87.99578 * 333.33681 * 17 16 15 27 27 C 1.52550 * 113.43619 * 302.67056 * 15 14 13 28 28 C 1.46887 * 120.46002 * 0.02562 * 12 10 7 29 29 H 1.09001 * 109.47640 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47360 * 300.00355 * 1 2 3 31 31 H 1.09002 * 109.46744 * 59.99952 * 1 2 3 32 32 H 1.09007 * 109.47518 * 240.00023 * 2 1 3 33 33 H 1.09001 * 109.47424 * 120.00689 * 2 1 3 34 34 H 1.08995 * 109.47351 * 59.99980 * 4 3 2 35 35 H 1.08999 * 109.47015 * 299.99942 * 4 3 2 36 36 H 1.08994 * 109.47507 * 305.00101 * 5 4 3 37 37 H 1.08999 * 109.46925 * 184.99820 * 5 4 3 38 38 H 1.09001 * 109.47464 * 179.97438 * 9 7 6 39 39 H 1.09000 * 109.47731 * 300.00016 * 9 7 6 40 40 H 1.09006 * 109.47457 * 59.99828 * 9 7 6 41 41 H 1.08997 * 109.59089 * 4.60628 * 13 12 10 42 42 H 1.08999 * 109.59185 * 244.16574 * 13 12 10 43 43 H 1.09004 * 109.52663 * 292.36511 * 14 13 12 44 44 H 1.08996 * 109.58645 * 172.18949 * 14 13 12 45 45 H 1.09004 * 113.49269 * 24.69551 * 16 15 14 46 46 H 1.09006 * 113.49256 * 254.18581 * 16 15 14 47 47 H 0.97004 * 119.99747 * 180.02562 * 21 20 18 48 48 H 1.08999 * 113.48969 * 141.41363 * 26 17 16 49 49 H 1.08999 * 113.48708 * 271.91864 * 26 17 16 50 50 H 1.08997 * 109.53381 * 177.21277 * 27 15 14 51 51 H 1.09001 * 109.52599 * 297.42910 * 27 15 14 52 52 H 1.09008 * 109.59073 * 355.38206 * 28 12 10 53 53 H 1.09003 * 109.58880 * 115.81973 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8254 2.9383 0.0012 6 8 3.3977 3.5450 1.2223 7 6 3.7194 4.9334 1.3253 8 1 4.6317 5.1376 0.7650 9 6 2.5715 5.7668 0.7519 10 6 3.9278 5.2947 2.7734 11 8 3.7240 4.4705 3.6394 12 7 4.3406 6.5338 3.1062 13 6 4.5475 6.8967 4.5145 14 6 5.9811 7.4141 4.6845 15 6 6.2407 8.5135 3.6592 16 6 5.5833 9.8519 3.9999 17 7 6.8135 10.5118 3.5344 18 6 7.1365 11.7320 3.0035 19 1 6.3666 12.4724 2.8442 20 6 8.4533 12.0169 2.6690 21 7 9.3915 11.1142 2.8627 22 14 8.8937 13.6812 1.9442 23 1 9.2287 14.6255 3.0403 24 1 10.0644 13.5342 1.0424 25 1 7.7382 14.2070 1.1737 26 6 7.5435 9.2825 3.8836 27 6 6.0234 8.0626 2.2181 28 6 4.5900 7.5402 2.0657 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8341 0.9763 -0.8891 35 1 3.8333 0.9766 0.8908 36 1 3.3499 3.4416 -0.8406 37 1 4.9082 3.0253 -0.0879 38 1 2.8166 6.8259 0.8308 39 1 2.4207 5.5055 -0.2956 40 1 1.6590 5.5627 1.3122 41 1 4.3985 6.0193 5.1437 42 1 3.8413 7.6769 4.7984 43 1 6.6846 6.5964 4.5279 44 1 6.1077 7.8161 5.6897 45 1 5.3954 9.9850 5.0654 46 1 4.7109 10.0763 3.3860 47 1 10.3117 11.3134 2.6293 48 1 8.3277 9.0257 3.1715 49 1 7.8881 9.2608 4.9174 50 1 6.1772 8.9062 1.5452 51 1 6.7284 7.2678 1.9748 52 1 4.4692 7.0864 1.0819 53 1 3.8865 8.3650 2.1790 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753677898.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:54 Heat of formation + Delta-G solvation = -65.222055 kcal Electronic energy + Delta-G solvation = -30784.153785 eV Core-core repulsion = 26658.363286 eV Total energy + Delta-G solvation = -4125.790499 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.55895 -39.17399 -38.45275 -37.34919 -35.76416 -33.04577 -32.36147 -31.69575 -30.55759 -30.24483 -29.04140 -26.99583 -25.15016 -24.60106 -23.21034 -23.15307 -23.08377 -22.62404 -21.16225 -19.67497 -17.86776 -17.38957 -17.16066 -16.71492 -16.61022 -16.17878 -15.86116 -15.21065 -14.93491 -14.83366 -14.78662 -14.58383 -14.03710 -13.84260 -13.75296 -13.66402 -13.25795 -12.99360 -12.76753 -12.72325 -12.50219 -12.31298 -12.20698 -12.00846 -11.88047 -11.71188 -11.62766 -11.48132 -11.15305 -11.07690 -11.01907 -10.88465 -10.83486 -10.40496 -10.27574 -9.98839 -9.89295 -9.73440 -9.60815 -9.39275 -9.21035 -8.81565 -8.40461 -6.87851 -5.78167 -3.10043 2.67026 2.74864 3.36018 3.36924 3.41907 3.43808 3.65100 4.41324 4.44088 4.64028 4.71914 4.76038 4.80802 4.90141 4.94394 4.96875 5.03370 5.04188 5.08941 5.13568 5.14055 5.29955 5.33993 5.38469 5.44679 5.46545 5.48925 5.55947 5.60549 5.61737 5.64221 5.81456 5.82078 5.86687 5.97707 6.01464 6.15583 6.27661 6.35455 6.48336 6.57418 6.62725 6.78988 6.80870 6.87283 6.97693 7.21629 7.34904 7.49254 7.55594 7.96581 8.25860 9.02627 9.69260 10.64478 11.39212 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023046 B = 0.002077 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.687054 B =13479.383174 C =13973.620983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.066 3.934 5 C 0.060 3.940 6 O -0.348 6.348 7 C 0.071 3.929 8 H 0.085 0.915 9 C -0.178 4.178 10 C 0.516 3.484 11 O -0.529 6.529 12 N -0.603 5.603 13 C 0.117 3.883 14 C -0.114 4.114 15 C -0.115 4.115 16 C 0.127 3.873 17 N -0.608 5.608 18 C -0.216 4.216 19 H 0.080 0.920 20 C -0.008 4.008 21 N -0.920 5.920 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.166 3.834 27 C -0.096 4.096 28 C 0.101 3.899 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.031 0.969 46 H 0.036 0.964 47 H 0.253 0.747 48 H 0.070 0.930 49 H 0.024 0.976 50 H 0.089 0.911 51 H 0.060 0.940 52 H 0.083 0.917 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.391 -18.816 -6.994 24.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.011 4.011 5 C -0.016 4.016 6 O -0.266 6.266 7 C 0.010 3.990 8 H 0.103 0.897 9 C -0.235 4.235 10 C 0.303 3.697 11 O -0.405 6.405 12 N -0.338 5.338 13 C -0.005 4.005 14 C -0.153 4.153 15 C -0.117 4.117 16 C 0.001 3.999 17 N -0.334 5.334 18 C -0.343 4.343 19 H 0.097 0.903 20 C -0.205 4.205 21 N -0.567 5.567 22 Si 0.741 3.259 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.041 3.959 27 C -0.134 4.134 28 C -0.022 4.022 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.048 0.952 46 H 0.054 0.946 47 H 0.063 0.937 48 H 0.088 0.912 49 H 0.041 0.959 50 H 0.108 0.892 51 H 0.079 0.921 52 H 0.101 0.899 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.505 -18.930 -6.536 24.154 hybrid contribution 0.816 0.998 -0.477 1.375 sum -12.688 -17.932 -7.013 23.059 Atomic orbital electron populations 1.21732 0.93737 1.02106 1.03270 1.22453 0.95732 0.83931 0.99891 1.87971 1.20488 1.26145 1.95377 1.22484 0.82241 0.95430 1.00919 1.22638 0.98397 0.92750 0.87857 1.88108 1.80109 1.20850 1.37581 1.21867 0.98998 0.83788 0.94339 0.89685 1.22416 0.98903 1.00314 1.01873 1.20288 0.77118 0.81837 0.90443 1.90683 1.50525 1.48547 1.50724 1.48043 1.66313 1.11242 1.08155 1.21618 0.97180 1.00576 0.81162 1.21733 0.95505 0.98445 0.99581 1.22071 1.01983 0.93421 0.94180 1.22398 0.91508 0.89517 0.96469 1.45580 1.03564 1.13081 1.71149 1.18916 0.92873 0.89353 1.33170 0.90267 1.24776 0.95567 0.98177 1.01955 1.69832 1.00432 1.33355 1.53058 0.86146 0.77795 0.83413 0.78565 1.21675 1.21675 1.20641 1.22039 0.92642 0.83560 0.97707 1.21433 0.94139 1.01086 0.96705 1.22080 0.98489 0.91253 0.90333 0.91215 0.91651 0.91943 0.93644 0.93354 0.91806 0.92216 0.92205 0.91548 0.90090 0.91252 0.91075 0.89426 0.91413 0.91834 0.90710 0.95191 0.94552 0.93705 0.91210 0.95861 0.89213 0.92083 0.89873 0.90807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.15 0.38 -0.67 16 2 C 0.06 0.45 6.66 37.15 0.25 0.70 16 3 O -0.38 -4.17 10.31 -40.08 -0.41 -4.59 16 4 C 0.07 0.59 6.32 37.16 0.23 0.83 16 5 C 0.06 0.57 6.13 37.16 0.23 0.80 16 6 O -0.35 -4.66 9.49 -59.70 -0.57 -5.23 16 7 C 0.07 0.84 2.30 -27.89 -0.06 0.78 16 8 H 0.09 0.83 7.11 -51.93 -0.37 0.46 16 9 C -0.18 -1.74 9.09 37.16 0.34 -1.40 16 10 C 0.52 7.67 7.11 -10.99 -0.08 7.59 16 11 O -0.53 -9.89 15.90 -14.30 -0.23 -10.12 16 12 N -0.60 -8.20 2.94 -172.65 -0.51 -8.71 16 13 C 0.12 1.61 6.35 -3.64 -0.02 1.59 16 14 C -0.11 -1.68 5.30 -26.78 -0.14 -1.82 16 15 C -0.12 -1.99 0.84 -155.02 -0.13 -2.12 16 16 C 0.13 2.47 7.63 -8.21 -0.06 2.40 16 17 N -0.61 -14.97 3.55 -184.66 -0.66 -15.62 16 18 C -0.22 -5.88 10.74 -15.06 -0.16 -6.04 16 19 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 21 N -0.92 -26.80 11.52 55.49 0.64 -26.16 16 22 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.17 3.76 6.54 -8.22 -0.05 3.71 16 27 C -0.10 -1.48 5.27 -26.80 -0.14 -1.62 16 28 C 0.10 1.24 4.93 -3.67 -0.02 1.22 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.50 7.87 -51.93 -0.41 0.09 16 37 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 38 H 0.08 0.70 5.37 -51.93 -0.28 0.43 16 39 H 0.07 0.57 7.87 -51.93 -0.41 0.16 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 1.27 6.97 -51.93 -0.36 0.91 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 45 H 0.03 0.58 8.06 -51.93 -0.42 0.16 16 46 H 0.04 0.67 7.53 -51.93 -0.39 0.28 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 48 H 0.07 1.76 7.11 -51.93 -0.37 1.39 16 49 H 0.02 0.55 8.09 -51.93 -0.42 0.13 16 50 H 0.09 1.60 7.95 -51.93 -0.41 1.19 16 51 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 52 H 0.08 0.82 4.53 -51.92 -0.24 0.59 16 53 H 0.07 0.89 7.60 -51.93 -0.39 0.49 16 LS Contribution 413.52 15.07 6.23 6.23 Total: -1.00 -34.19 413.52 -9.57 -43.76 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -9.51 Total: -1.90 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 0.46 Total: 5.62 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.52 Total: -50.49 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -1.21 Total: -19.93 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.19 -9.57 -43.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753677898.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.459 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds