Wall clock time and date at job start Sat Apr 11 2020 06:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47524 * 2 1 4 4 C 1.42898 * 114.00065 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46718 * 180.02562 * 4 3 2 6 6 O 1.42905 * 109.47205 * 65.00251 * 5 4 3 7 7 C 1.42898 * 113.99849 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.47422 * 329.99944 * 7 6 5 9 9 C 1.52998 * 109.46964 * 89.99873 * 7 6 5 10 10 C 1.50698 * 109.47175 * 209.99658 * 7 6 5 11 11 O 1.21277 * 119.99919 * 355.00592 * 10 7 6 12 12 N 1.34778 * 120.00394 * 175.00050 * 10 7 6 13 13 C 1.46891 * 120.46588 * 180.02562 * 12 10 7 14 14 C 1.53358 * 108.74312 * 124.38885 * 13 12 10 15 15 C 1.52552 * 109.12612 * 52.25741 * 14 13 12 16 16 C 1.52963 * 114.06004 * 75.53976 * 15 14 13 17 17 N 1.47166 * 87.85376 * 139.44077 * 16 15 14 18 18 C 1.36936 * 136.00143 * 153.08248 * 17 16 15 19 19 H 1.07994 * 119.99869 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99903 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99863 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00052 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46936 * 89.99757 * 22 20 18 24 24 H 1.48502 * 109.47124 * 209.99971 * 22 20 18 25 25 H 1.48502 * 109.46908 * 329.99946 * 22 20 18 26 26 C 1.47170 * 87.99578 * 333.33681 * 17 16 15 27 27 C 1.52550 * 113.43619 * 302.67056 * 15 14 13 28 28 C 1.46887 * 120.46002 * 0.02562 * 12 10 7 29 29 H 1.09001 * 109.47640 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47360 * 300.00355 * 1 2 3 31 31 H 1.09002 * 109.46744 * 59.99952 * 1 2 3 32 32 H 1.09007 * 109.47518 * 240.00023 * 2 1 3 33 33 H 1.09001 * 109.47424 * 120.00689 * 2 1 3 34 34 H 1.08995 * 109.47351 * 59.99980 * 4 3 2 35 35 H 1.08999 * 109.47015 * 299.99942 * 4 3 2 36 36 H 1.08994 * 109.47507 * 305.00101 * 5 4 3 37 37 H 1.08999 * 109.46925 * 184.99820 * 5 4 3 38 38 H 1.09001 * 109.47464 * 179.97438 * 9 7 6 39 39 H 1.09000 * 109.47731 * 300.00016 * 9 7 6 40 40 H 1.09006 * 109.47457 * 59.99828 * 9 7 6 41 41 H 1.08997 * 109.59089 * 4.60628 * 13 12 10 42 42 H 1.08999 * 109.59185 * 244.16574 * 13 12 10 43 43 H 1.09004 * 109.52663 * 292.36511 * 14 13 12 44 44 H 1.08996 * 109.58645 * 172.18949 * 14 13 12 45 45 H 1.09004 * 113.49269 * 24.69551 * 16 15 14 46 46 H 1.09006 * 113.49256 * 254.18581 * 16 15 14 47 47 H 0.97004 * 119.99747 * 180.02562 * 21 20 18 48 48 H 1.08999 * 113.48969 * 141.41363 * 26 17 16 49 49 H 1.08999 * 113.48708 * 271.91864 * 26 17 16 50 50 H 1.08997 * 109.53381 * 177.21277 * 27 15 14 51 51 H 1.09001 * 109.52599 * 297.42910 * 27 15 14 52 52 H 1.09008 * 109.59073 * 355.38206 * 28 12 10 53 53 H 1.09003 * 109.58880 * 115.81973 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8254 2.9383 0.0012 6 8 3.3977 3.5450 1.2223 7 6 3.7194 4.9334 1.3253 8 1 4.6317 5.1376 0.7650 9 6 2.5715 5.7668 0.7519 10 6 3.9278 5.2947 2.7734 11 8 3.7240 4.4705 3.6394 12 7 4.3406 6.5338 3.1062 13 6 4.5475 6.8967 4.5145 14 6 5.9811 7.4141 4.6845 15 6 6.2407 8.5135 3.6592 16 6 5.5833 9.8519 3.9999 17 7 6.8135 10.5118 3.5344 18 6 7.1365 11.7320 3.0035 19 1 6.3666 12.4724 2.8442 20 6 8.4533 12.0169 2.6690 21 7 9.3915 11.1142 2.8627 22 14 8.8937 13.6812 1.9442 23 1 9.2287 14.6255 3.0403 24 1 10.0644 13.5342 1.0424 25 1 7.7382 14.2070 1.1737 26 6 7.5435 9.2825 3.8836 27 6 6.0234 8.0626 2.2181 28 6 4.5900 7.5402 2.0657 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8341 0.9763 -0.8891 35 1 3.8333 0.9766 0.8908 36 1 3.3499 3.4416 -0.8406 37 1 4.9082 3.0253 -0.0879 38 1 2.8166 6.8259 0.8308 39 1 2.4207 5.5055 -0.2956 40 1 1.6590 5.5627 1.3122 41 1 4.3985 6.0193 5.1437 42 1 3.8413 7.6769 4.7984 43 1 6.6846 6.5964 4.5279 44 1 6.1077 7.8161 5.6897 45 1 5.3954 9.9850 5.0654 46 1 4.7109 10.0763 3.3860 47 1 10.3117 11.3134 2.6293 48 1 8.3277 9.0257 3.1715 49 1 7.8881 9.2608 4.9174 50 1 6.1772 8.9062 1.5452 51 1 6.7284 7.2678 1.9748 52 1 4.4692 7.0864 1.0819 53 1 3.8865 8.3650 2.1790 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753677898.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:53 Heat of formation + Delta-G solvation = -86.445034 kcal Electronic energy + Delta-G solvation = -30785.074082 eV Core-core repulsion = 26658.363286 eV Total energy + Delta-G solvation = -4126.710797 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.77535 -40.47602 -39.30466 -38.22972 -37.10299 -34.54209 -33.62024 -32.56019 -31.84967 -31.41661 -29.76823 -28.73493 -26.64948 -25.95427 -24.42969 -24.37555 -23.66481 -23.46357 -22.66558 -20.86429 -19.08476 -18.65055 -18.33985 -17.86003 -17.69242 -17.12957 -16.85206 -16.70989 -16.13402 -16.08847 -15.75670 -15.66867 -15.58460 -15.13943 -14.86895 -14.62864 -14.37549 -14.13537 -13.78851 -13.72328 -13.53644 -13.45192 -13.29811 -13.19782 -12.96601 -12.87619 -12.79658 -12.60768 -12.51474 -12.29592 -12.16744 -12.14958 -12.09757 -11.84795 -11.63718 -11.61497 -11.13207 -10.92968 -10.86754 -10.77548 -10.56337 -10.41858 -9.60829 -8.86795 -7.87294 -5.19626 1.46979 1.48487 1.55712 1.56960 1.75825 2.49458 2.74993 2.79737 3.34277 3.43636 3.49210 3.61491 3.82018 3.92359 4.01103 4.10265 4.13097 4.16343 4.16921 4.24530 4.34489 4.35314 4.37862 4.46272 4.50373 4.54089 4.57596 4.64423 4.69278 4.73135 4.79869 4.80783 4.87817 4.88100 4.92145 4.92238 5.04362 5.07986 5.16416 5.21799 5.25860 5.27165 5.30422 5.36386 5.51502 5.59634 5.76598 5.96878 6.08742 6.30641 6.41939 6.94342 7.14556 7.64197 8.66386 9.30270 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023046 B = 0.002077 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.687054 B =13479.383174 C =13973.620983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.409 6.409 4 C 0.061 3.939 5 C 0.053 3.947 6 O -0.382 6.382 7 C 0.071 3.929 8 H 0.110 0.890 9 C -0.171 4.171 10 C 0.512 3.488 11 O -0.574 6.574 12 N -0.600 5.600 13 C 0.120 3.880 14 C -0.105 4.105 15 C -0.087 4.087 16 C 0.130 3.870 17 N -0.636 5.636 18 C -0.222 4.222 19 H 0.085 0.915 20 C -0.068 4.068 21 N -0.954 5.954 22 Si 0.976 3.024 23 H -0.291 1.291 24 H -0.296 1.296 25 H -0.265 1.265 26 C 0.160 3.840 27 C -0.092 4.092 28 C 0.109 3.891 29 H 0.090 0.910 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.093 0.907 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.054 0.946 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.080 0.920 45 H 0.039 0.961 46 H 0.054 0.946 47 H 0.246 0.754 48 H 0.035 0.965 49 H 0.008 0.992 50 H 0.067 0.933 51 H 0.062 0.938 52 H 0.114 0.886 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.991 -19.035 -8.647 25.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.329 6.329 4 C -0.015 4.015 5 C -0.023 4.023 6 O -0.301 6.301 7 C 0.011 3.989 8 H 0.128 0.872 9 C -0.229 4.229 10 C 0.301 3.699 11 O -0.454 6.454 12 N -0.333 5.333 13 C -0.002 4.002 14 C -0.144 4.144 15 C -0.088 4.088 16 C 0.005 3.995 17 N -0.362 5.362 18 C -0.350 4.350 19 H 0.103 0.897 20 C -0.261 4.261 21 N -0.603 5.603 22 Si 0.804 3.196 23 H -0.218 1.218 24 H -0.223 1.223 25 H -0.190 1.190 26 C 0.034 3.966 27 C -0.130 4.130 28 C -0.012 4.012 29 H 0.109 0.891 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.111 0.889 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.056 0.944 46 H 0.073 0.927 47 H 0.055 0.945 48 H 0.054 0.946 49 H 0.026 0.974 50 H 0.086 0.914 51 H 0.081 0.919 52 H 0.132 0.868 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.143 -19.141 -8.195 25.746 hybrid contribution 1.311 1.022 0.082 1.665 sum -13.832 -18.119 -8.113 24.196 Atomic orbital electron populations 1.21757 0.93258 1.03259 1.02450 1.22640 0.96238 0.83054 1.00751 1.87931 1.21588 1.27800 1.95571 1.22639 0.81582 0.95505 1.01755 1.22901 0.99679 0.92829 0.86862 1.88077 1.80714 1.21639 1.39630 1.21976 1.00854 0.83809 0.92297 0.87228 1.22396 0.97304 1.00634 1.02539 1.20935 0.76063 0.81368 0.91568 1.90661 1.52582 1.49821 1.52297 1.48100 1.65653 1.11302 1.08271 1.21566 0.96369 1.00679 0.81602 1.21651 0.96421 0.97322 0.98997 1.21861 0.97422 0.93347 0.96202 1.22544 0.90472 0.89539 0.96971 1.45909 1.06086 1.12826 1.71335 1.19317 0.93088 0.90413 1.32169 0.89698 1.25584 0.95699 1.01575 1.03247 1.70029 1.00301 1.35179 1.54814 0.85115 0.77533 0.79328 0.77599 1.21848 1.22271 1.18970 1.22024 0.94154 0.84627 0.95764 1.21373 0.96652 1.00379 0.94637 1.22133 0.96166 0.91473 0.91471 0.89113 0.93169 0.91995 0.91720 0.93478 0.88912 0.93329 0.90893 0.89670 0.88695 0.89363 0.92687 0.90035 0.89915 0.92094 0.90160 0.94350 0.92740 0.94492 0.94641 0.97435 0.91406 0.91899 0.86765 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 10.28 71.98 0.74 -1.21 16 2 C 0.05 0.73 6.66 71.98 0.48 1.21 16 3 O -0.41 -8.57 10.31 -144.34 -1.49 -10.06 16 4 C 0.06 1.01 6.32 71.98 0.45 1.47 16 5 C 0.05 0.90 6.13 71.98 0.44 1.34 16 6 O -0.38 -9.69 9.49 -125.59 -1.19 -10.88 16 7 C 0.07 1.52 2.30 29.85 0.07 1.59 16 8 H 0.11 1.75 7.11 -2.39 -0.02 1.74 16 9 C -0.17 -2.84 9.09 71.98 0.65 -2.19 16 10 C 0.51 14.39 7.11 87.66 0.62 15.01 16 11 O -0.57 -21.29 15.90 15.97 0.25 -21.04 16 12 N -0.60 -14.94 2.94 -818.52 -2.41 -17.34 16 13 C 0.12 3.09 6.35 86.43 0.55 3.64 16 14 C -0.10 -2.98 5.30 30.57 0.16 -2.82 16 15 C -0.09 -2.94 0.84 -52.51 -0.04 -2.98 16 16 C 0.13 4.83 7.63 83.32 0.64 5.47 16 17 N -0.64 -31.35 3.55 -738.13 -2.62 -33.97 16 18 C -0.22 -12.08 10.74 84.03 0.90 -11.17 16 19 H 0.09 4.40 7.83 -2.91 -0.02 4.38 16 20 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 21 N -0.95 -57.16 11.52 21.65 0.25 -56.91 16 22 Si 0.98 45.00 29.55 68.60 2.03 47.03 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 26 C 0.16 7.41 6.54 83.31 0.55 7.96 16 27 C -0.09 -2.71 5.27 30.55 0.16 -2.55 16 28 C 0.11 2.34 4.93 86.41 0.43 2.77 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.69 8.14 -2.38 -0.02 0.68 16 33 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 1.01 7.87 -2.39 -0.02 0.99 16 37 H 0.09 1.07 8.08 -2.39 -0.02 1.05 16 38 H 0.09 1.27 5.37 -2.39 -0.01 1.26 16 39 H 0.09 1.15 7.87 -2.39 -0.02 1.13 16 40 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 41 H 0.08 2.27 6.97 -2.39 -0.02 2.25 16 42 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 44 H 0.08 2.21 8.10 -2.39 -0.02 2.19 16 45 H 0.04 1.40 8.06 -2.39 -0.02 1.38 16 46 H 0.05 1.85 7.53 -2.38 -0.02 1.83 16 47 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 48 H 0.04 1.87 7.11 -2.39 -0.02 1.85 16 49 H 0.01 0.38 8.09 -2.39 -0.02 0.36 16 50 H 0.07 2.34 7.95 -2.39 -0.02 2.32 16 51 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 52 H 0.11 1.79 4.53 -2.38 -0.01 1.78 16 53 H 0.09 1.73 7.60 -2.39 -0.02 1.71 16 Total: -1.00 -76.60 413.52 2.96 -73.65 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.87 Total: 15.36 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 7.27 Total: 14.17 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -4.78 Total: -108.23 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -2.43 Total: -41.98 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -76.60 2.96 -73.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753677898.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.799 kcal (2) G-P(sol) polarization free energy of solvation -76.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds