Wall clock time and date at job start Sat Apr 11 2020 06:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.46903 * 2 1 4 4 C 1.42904 * 114.00034 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47329 * 180.02562 * 4 3 2 6 6 O 1.42897 * 109.46625 * 65.00447 * 5 4 3 7 7 C 1.42909 * 113.99643 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.46955 * 29.99633 * 7 6 5 9 9 C 1.52996 * 109.47106 * 269.99706 * 7 6 5 10 10 C 1.50699 * 109.46856 * 149.99563 * 7 6 5 11 11 O 1.21274 * 120.00502 * 8.18697 * 10 7 6 12 12 N 1.34784 * 119.99662 * 188.45683 * 10 7 6 13 13 C 1.46882 * 120.46229 * 3.80155 * 12 10 7 14 14 C 1.52864 * 109.01452 * 235.48168 * 13 12 10 15 15 C 1.52670 * 109.17448 * 307.82391 * 14 13 12 16 16 C 1.53488 * 113.61930 * 188.98876 * 15 14 13 17 17 N 1.47669 * 85.98650 * 137.70687 * 16 15 14 18 18 C 1.36941 * 134.45449 * 155.70067 * 17 16 15 19 19 H 1.07999 * 119.99719 * 176.72297 * 18 17 16 20 20 C 1.38808 * 120.00091 * 356.73303 * 18 17 16 21 21 N 1.31622 * 120.00349 * 7.41373 * 20 18 17 22 22 Si 1.86802 * 120.00182 * 187.42068 * 20 18 17 23 23 H 1.48507 * 109.47217 * 94.97036 * 22 20 18 24 24 H 1.48494 * 109.47576 * 214.97335 * 22 20 18 25 25 H 1.48500 * 109.47007 * 334.97365 * 22 20 18 26 26 C 1.47663 * 91.08616 * 335.68053 * 17 16 15 27 27 C 1.52663 * 113.19027 * 57.46071 * 15 14 13 28 28 C 1.46876 * 120.46355 * 184.07206 * 12 10 7 29 29 H 1.09000 * 109.47791 * 59.99713 * 1 2 3 30 30 H 1.08997 * 109.47197 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46620 * 299.99679 * 1 2 3 32 32 H 1.08999 * 109.46582 * 240.00627 * 2 1 3 33 33 H 1.09003 * 109.47312 * 120.00403 * 2 1 3 34 34 H 1.08998 * 109.46882 * 59.99890 * 4 3 2 35 35 H 1.09003 * 109.47411 * 300.00618 * 4 3 2 36 36 H 1.08992 * 109.47215 * 305.00102 * 5 4 3 37 37 H 1.08999 * 109.46877 * 185.00015 * 5 4 3 38 38 H 1.09000 * 109.47240 * 184.04189 * 9 7 6 39 39 H 1.08998 * 109.47001 * 304.04843 * 9 7 6 40 40 H 1.09000 * 109.46943 * 64.04761 * 9 7 6 41 41 H 1.09002 * 109.59517 * 355.30840 * 13 12 10 42 42 H 1.08999 * 109.58829 * 115.74899 * 13 12 10 43 43 H 1.08995 * 109.60981 * 187.84014 * 14 13 12 44 44 H 1.09000 * 109.44532 * 67.69915 * 14 13 12 45 45 H 1.09000 * 113.79169 * 251.97227 * 16 15 14 46 46 H 1.09004 * 113.79256 * 23.43961 * 16 15 14 47 47 H 0.96995 * 120.00561 * 180.02562 * 21 20 18 48 48 H 1.09003 * 113.78990 * 270.04821 * 26 17 16 49 49 H 1.09003 * 113.78858 * 138.58300 * 26 17 16 50 50 H 1.08997 * 109.53478 * 182.52156 * 27 15 14 51 51 H 1.08994 * 109.59620 * 62.32954 * 27 15 14 52 52 H 1.09001 * 109.58712 * 244.25639 * 28 12 10 53 53 H 1.08997 * 109.59166 * 4.68746 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8253 2.9385 0.0001 6 8 3.3986 3.5446 1.2218 7 6 3.7204 4.9332 1.3250 8 1 3.7324 5.3783 0.3301 9 6 5.0984 5.0907 1.9708 10 6 2.6858 5.6268 2.1732 11 8 1.8504 4.9759 2.7640 12 7 2.6857 6.9711 2.2709 13 6 3.6357 7.7746 1.4903 14 6 4.4332 8.6665 2.4418 15 6 3.4650 9.4443 3.3298 16 6 4.1433 10.5319 4.1740 17 7 2.9901 11.3824 3.8169 18 6 2.3902 12.4735 4.3870 19 1 1.5658 12.9594 3.8864 20 6 2.8418 12.9550 5.6080 21 7 3.9346 12.4583 6.1479 22 14 1.8986 14.3080 6.4851 23 1 0.9658 13.7029 7.4696 24 1 2.8535 15.1995 7.1912 25 1 1.1266 15.0971 5.4919 26 6 2.7434 10.5851 2.5988 27 6 2.5283 8.5436 4.1310 28 6 1.7394 7.6527 3.1638 29 1 -0.3635 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8932 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 3.8332 0.9768 -0.8908 35 1 3.8341 0.9764 0.8891 36 1 3.3491 3.4420 -0.8411 37 1 4.9081 3.0256 -0.0899 38 1 5.3132 6.1495 2.1152 39 1 5.1078 4.5831 2.9354 40 1 5.8561 4.6516 1.3219 41 1 4.3172 7.1150 0.9530 42 1 3.0910 8.3974 0.7807 43 1 5.0406 9.3646 1.8660 44 1 5.0801 8.0472 3.0632 45 1 4.2009 10.2924 5.2358 46 1 5.0907 10.8807 3.7629 47 1 4.2500 12.7945 7.0013 48 1 3.2748 10.9496 1.7196 49 1 1.6884 10.3877 2.4087 50 1 1.8363 9.1579 4.7071 51 1 3.1116 7.9193 4.8077 52 1 1.0583 8.2667 2.5744 53 1 1.1720 6.9129 3.7284 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753677899.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:57 Heat of formation + Delta-G solvation = -69.205489 kcal Electronic energy + Delta-G solvation = -30841.713378 eV Core-core repulsion = 26715.750144 eV Total energy + Delta-G solvation = -4125.963234 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.53766 -39.09758 -38.41196 -37.34254 -35.72276 -32.90961 -32.37501 -31.66750 -30.69981 -30.13639 -29.06528 -26.92533 -25.11011 -24.67789 -23.47043 -23.05845 -23.00326 -22.47191 -21.24050 -19.59902 -17.71938 -17.44614 -17.03997 -16.82658 -16.68677 -16.23093 -15.57728 -15.44634 -14.95703 -14.84368 -14.77363 -14.65384 -13.97914 -13.78955 -13.70015 -13.58509 -13.27277 -12.96401 -12.83259 -12.65821 -12.53582 -12.35754 -12.06737 -12.02217 -11.90562 -11.70865 -11.63032 -11.41023 -11.18492 -11.13074 -10.99487 -10.85927 -10.81802 -10.33563 -10.17323 -10.05890 -9.87561 -9.69591 -9.61852 -9.39929 -9.30997 -8.71794 -8.39637 -6.85285 -5.75673 -3.05861 2.68283 2.76483 3.36757 3.40237 3.45411 3.47203 3.62921 4.39175 4.47233 4.59968 4.71286 4.73795 4.80396 4.88417 4.89782 4.91813 5.02244 5.05361 5.06169 5.10503 5.20336 5.29243 5.30661 5.35356 5.44907 5.45641 5.46916 5.51254 5.54580 5.64333 5.70134 5.83375 5.87396 5.91614 5.96772 5.99008 6.20023 6.28201 6.31824 6.45671 6.62856 6.65932 6.80726 6.82110 6.91502 6.98409 7.24448 7.40372 7.51641 7.59674 8.00771 8.29191 9.07013 9.73423 10.63715 11.41803 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026902 B = 0.002057 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.575927 B =13607.432644 C =14151.890353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.378 6.378 4 C 0.066 3.934 5 C 0.061 3.939 6 O -0.348 6.348 7 C 0.072 3.928 8 H 0.083 0.917 9 C -0.177 4.177 10 C 0.515 3.485 11 O -0.523 6.523 12 N -0.604 5.604 13 C 0.103 3.897 14 C -0.120 4.120 15 C -0.108 4.108 16 C 0.173 3.827 17 N -0.609 5.609 18 C -0.221 4.221 19 H 0.078 0.922 20 C -0.007 4.007 21 N -0.920 5.920 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.126 3.874 27 C -0.096 4.096 28 C 0.115 3.885 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.070 0.930 46 H 0.025 0.975 47 H 0.253 0.747 48 H 0.030 0.970 49 H 0.041 0.959 50 H 0.087 0.913 51 H 0.060 0.940 52 H 0.068 0.932 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.802 -22.182 -15.468 27.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.298 6.298 4 C -0.011 4.011 5 C -0.016 4.016 6 O -0.266 6.266 7 C 0.011 3.989 8 H 0.101 0.899 9 C -0.235 4.235 10 C 0.301 3.699 11 O -0.398 6.398 12 N -0.339 5.339 13 C -0.019 4.019 14 C -0.159 4.159 15 C -0.109 4.109 16 C 0.048 3.952 17 N -0.335 5.335 18 C -0.349 4.349 19 H 0.096 0.904 20 C -0.204 4.204 21 N -0.567 5.567 22 Si 0.739 3.261 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.000 4.000 27 C -0.134 4.134 28 C -0.006 4.006 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.042 0.958 47 H 0.063 0.937 48 H 0.048 0.952 49 H 0.059 0.941 50 H 0.106 0.894 51 H 0.079 0.921 52 H 0.086 0.914 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.062 -22.222 -14.755 26.754 hybrid contribution 0.128 0.922 0.186 0.949 sum 2.189 -21.301 -14.569 25.899 Atomic orbital electron populations 1.21738 0.93680 1.02073 1.03445 1.22451 0.95843 0.83873 0.99754 1.88018 1.20280 1.26128 1.95330 1.22474 0.82502 0.95348 1.00762 1.22628 0.98331 0.92951 0.87722 1.88127 1.80595 1.20617 1.37279 1.21892 0.94035 0.83823 0.99190 0.89925 1.22385 0.94725 1.03886 1.02479 1.20270 0.85226 0.82020 0.82338 1.90702 1.38393 1.64549 1.46187 1.48047 1.36608 1.04888 1.44355 1.21816 0.91751 0.94346 0.94025 1.21778 0.97890 0.98304 0.97912 1.22361 0.96785 0.94235 0.97513 1.22243 0.89638 0.84992 0.98356 1.46005 1.32042 1.33387 1.22050 1.19017 1.11100 1.04119 1.00677 0.90415 1.24757 0.97685 1.00012 0.97927 1.69830 1.22491 1.45397 1.19026 0.86152 0.78953 0.81166 0.79802 1.21585 1.21830 1.20698 1.22589 0.97302 0.89302 0.90780 1.21491 0.98502 0.96636 0.96798 1.21693 0.91211 0.95599 0.92139 0.91931 0.91221 0.91509 0.93705 0.93399 0.91882 0.92342 0.92319 0.91610 0.89966 0.90918 0.91437 0.90236 0.91005 0.90575 0.91680 0.91161 0.95762 0.93727 0.95200 0.94092 0.89438 0.92128 0.91388 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.80 16 2 C 0.06 0.48 6.66 37.16 0.25 0.73 16 3 O -0.38 -4.35 10.31 -40.08 -0.41 -4.76 16 4 C 0.07 0.56 6.32 37.16 0.23 0.80 16 5 C 0.06 0.53 6.13 37.16 0.23 0.76 16 6 O -0.35 -4.54 9.50 -59.64 -0.57 -5.11 16 7 C 0.07 0.82 2.28 -27.89 -0.06 0.75 16 8 H 0.08 0.73 6.91 -51.93 -0.36 0.37 16 9 C -0.18 -1.63 9.10 37.16 0.34 -1.29 16 10 C 0.52 7.76 7.05 -10.98 -0.08 7.68 16 11 O -0.52 -10.16 15.92 -14.21 -0.23 -10.39 16 12 N -0.60 -8.30 2.95 -172.95 -0.51 -8.81 16 13 C 0.10 1.15 5.34 -3.90 -0.02 1.13 16 14 C -0.12 -1.57 5.06 -26.97 -0.14 -1.70 16 15 C -0.11 -1.86 0.77 -154.43 -0.12 -1.98 16 16 C 0.17 3.91 6.64 -3.16 -0.02 3.89 16 17 N -0.61 -15.14 3.53 -179.76 -0.64 -15.77 16 18 C -0.22 -6.14 10.69 -15.06 -0.16 -6.30 16 19 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 21 N -0.92 -27.14 11.44 55.49 0.63 -26.50 16 22 Si 0.91 22.17 29.56 -169.99 -5.02 17.15 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 C 0.13 2.44 7.72 -3.15 -0.02 2.42 16 27 C -0.10 -1.64 5.21 -26.73 -0.14 -1.78 16 28 C 0.12 1.76 6.29 -3.66 -0.02 1.73 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 37 H 0.07 0.39 7.96 -51.93 -0.41 -0.02 16 38 H 0.08 0.72 5.02 -51.93 -0.26 0.46 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.46 7.96 -51.93 -0.41 0.05 16 41 H 0.08 0.67 4.56 -51.93 -0.24 0.43 16 42 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 43 H 0.08 0.94 8.12 -51.93 -0.42 0.52 16 44 H 0.06 0.82 7.36 -51.93 -0.38 0.44 16 45 H 0.07 1.79 7.15 -51.93 -0.37 1.42 16 46 H 0.02 0.57 8.09 -51.93 -0.42 0.15 16 47 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 48 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 49 H 0.04 0.77 7.41 -51.93 -0.38 0.39 16 50 H 0.09 1.72 8.01 -51.93 -0.42 1.30 16 51 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 52 H 0.07 1.01 7.49 -51.93 -0.39 0.62 16 53 H 0.09 1.43 7.00 -51.93 -0.36 1.07 16 LS Contribution 412.31 15.07 6.21 6.21 Total: -1.00 -35.20 412.31 -9.42 -44.62 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -9.44 Total: -2.37 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 0.55 Total: 5.72 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.51 Total: -51.08 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -1.21 Total: -20.25 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.20 -9.42 -44.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753677899.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.583 kcal (2) G-P(sol) polarization free energy of solvation -35.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds