Wall clock time and date at job start Sat Apr 11 2020 06:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.46903 * 2 1 4 4 C 1.42904 * 114.00034 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47329 * 180.02562 * 4 3 2 6 6 O 1.42897 * 109.46625 * 65.00447 * 5 4 3 7 7 C 1.42909 * 113.99643 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.46955 * 29.99633 * 7 6 5 9 9 C 1.52996 * 109.47106 * 269.99706 * 7 6 5 10 10 C 1.50699 * 109.46856 * 149.99563 * 7 6 5 11 11 O 1.21274 * 120.00502 * 8.18697 * 10 7 6 12 12 N 1.34784 * 119.99662 * 188.45683 * 10 7 6 13 13 C 1.46882 * 120.46229 * 3.80155 * 12 10 7 14 14 C 1.52864 * 109.01452 * 235.48168 * 13 12 10 15 15 C 1.52670 * 109.17448 * 307.82391 * 14 13 12 16 16 C 1.53488 * 113.61930 * 188.98876 * 15 14 13 17 17 N 1.47669 * 85.98650 * 137.70687 * 16 15 14 18 18 C 1.36941 * 134.45449 * 155.70067 * 17 16 15 19 19 H 1.07999 * 119.99719 * 176.72297 * 18 17 16 20 20 C 1.38808 * 120.00091 * 356.73303 * 18 17 16 21 21 N 1.31622 * 120.00349 * 7.41373 * 20 18 17 22 22 Si 1.86802 * 120.00182 * 187.42068 * 20 18 17 23 23 H 1.48507 * 109.47217 * 94.97036 * 22 20 18 24 24 H 1.48494 * 109.47576 * 214.97335 * 22 20 18 25 25 H 1.48500 * 109.47007 * 334.97365 * 22 20 18 26 26 C 1.47663 * 91.08616 * 335.68053 * 17 16 15 27 27 C 1.52663 * 113.19027 * 57.46071 * 15 14 13 28 28 C 1.46876 * 120.46355 * 184.07206 * 12 10 7 29 29 H 1.09000 * 109.47791 * 59.99713 * 1 2 3 30 30 H 1.08997 * 109.47197 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46620 * 299.99679 * 1 2 3 32 32 H 1.08999 * 109.46582 * 240.00627 * 2 1 3 33 33 H 1.09003 * 109.47312 * 120.00403 * 2 1 3 34 34 H 1.08998 * 109.46882 * 59.99890 * 4 3 2 35 35 H 1.09003 * 109.47411 * 300.00618 * 4 3 2 36 36 H 1.08992 * 109.47215 * 305.00102 * 5 4 3 37 37 H 1.08999 * 109.46877 * 185.00015 * 5 4 3 38 38 H 1.09000 * 109.47240 * 184.04189 * 9 7 6 39 39 H 1.08998 * 109.47001 * 304.04843 * 9 7 6 40 40 H 1.09000 * 109.46943 * 64.04761 * 9 7 6 41 41 H 1.09002 * 109.59517 * 355.30840 * 13 12 10 42 42 H 1.08999 * 109.58829 * 115.74899 * 13 12 10 43 43 H 1.08995 * 109.60981 * 187.84014 * 14 13 12 44 44 H 1.09000 * 109.44532 * 67.69915 * 14 13 12 45 45 H 1.09000 * 113.79169 * 251.97227 * 16 15 14 46 46 H 1.09004 * 113.79256 * 23.43961 * 16 15 14 47 47 H 0.96995 * 120.00561 * 180.02562 * 21 20 18 48 48 H 1.09003 * 113.78990 * 270.04821 * 26 17 16 49 49 H 1.09003 * 113.78858 * 138.58300 * 26 17 16 50 50 H 1.08997 * 109.53478 * 182.52156 * 27 15 14 51 51 H 1.08994 * 109.59620 * 62.32954 * 27 15 14 52 52 H 1.09001 * 109.58712 * 244.25639 * 28 12 10 53 53 H 1.08997 * 109.59166 * 4.68746 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8253 2.9385 0.0001 6 8 3.3986 3.5446 1.2218 7 6 3.7204 4.9332 1.3250 8 1 3.7324 5.3783 0.3301 9 6 5.0984 5.0907 1.9708 10 6 2.6858 5.6268 2.1732 11 8 1.8504 4.9759 2.7640 12 7 2.6857 6.9711 2.2709 13 6 3.6357 7.7746 1.4903 14 6 4.4332 8.6665 2.4418 15 6 3.4650 9.4443 3.3298 16 6 4.1433 10.5319 4.1740 17 7 2.9901 11.3824 3.8169 18 6 2.3902 12.4735 4.3870 19 1 1.5658 12.9594 3.8864 20 6 2.8418 12.9550 5.6080 21 7 3.9346 12.4583 6.1479 22 14 1.8986 14.3080 6.4851 23 1 0.9658 13.7029 7.4696 24 1 2.8535 15.1995 7.1912 25 1 1.1266 15.0971 5.4919 26 6 2.7434 10.5851 2.5988 27 6 2.5283 8.5436 4.1310 28 6 1.7394 7.6527 3.1638 29 1 -0.3635 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8932 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 3.8332 0.9768 -0.8908 35 1 3.8341 0.9764 0.8891 36 1 3.3491 3.4420 -0.8411 37 1 4.9081 3.0256 -0.0899 38 1 5.3132 6.1495 2.1152 39 1 5.1078 4.5831 2.9354 40 1 5.8561 4.6516 1.3219 41 1 4.3172 7.1150 0.9530 42 1 3.0910 8.3974 0.7807 43 1 5.0406 9.3646 1.8660 44 1 5.0801 8.0472 3.0632 45 1 4.2009 10.2924 5.2358 46 1 5.0907 10.8807 3.7629 47 1 4.2500 12.7945 7.0013 48 1 3.2748 10.9496 1.7196 49 1 1.6884 10.3877 2.4087 50 1 1.8363 9.1579 4.7071 51 1 3.1116 7.9193 4.8077 52 1 1.0583 8.2667 2.5744 53 1 1.1720 6.9129 3.7284 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753677899.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:56 Heat of formation + Delta-G solvation = -92.035146 kcal Electronic energy + Delta-G solvation = -30842.703346 eV Core-core repulsion = 26715.750144 eV Total energy + Delta-G solvation = -4126.953202 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.73562 -40.36340 -39.27811 -38.21375 -37.08213 -34.47099 -33.57515 -32.50675 -32.05040 -31.29997 -29.75466 -28.69480 -26.74309 -25.87256 -24.75948 -23.99098 -23.67379 -23.35336 -22.81880 -20.80831 -18.86178 -18.68693 -18.39280 -17.90340 -17.71149 -17.08054 -16.85822 -16.52023 -16.36459 -16.09535 -15.84407 -15.64861 -15.55834 -15.11656 -14.88439 -14.40501 -14.31994 -14.02809 -13.95206 -13.78048 -13.60558 -13.45793 -13.21982 -13.13150 -12.97247 -12.81609 -12.78410 -12.65011 -12.58649 -12.26087 -12.16636 -12.13747 -12.09398 -11.82818 -11.65127 -11.53346 -11.21395 -11.03747 -10.83910 -10.73838 -10.52650 -10.39714 -9.60762 -8.86017 -7.89106 -5.18848 1.44023 1.46094 1.54104 1.57326 1.77883 2.48409 2.78417 2.82538 3.32960 3.43674 3.47373 3.63616 3.85718 3.96975 4.01041 4.04376 4.13876 4.16374 4.19274 4.27755 4.29756 4.34515 4.44009 4.47993 4.50512 4.54165 4.62560 4.66884 4.70684 4.75161 4.77963 4.81274 4.87650 4.89968 4.91981 4.96284 5.02714 5.06515 5.16526 5.20569 5.25407 5.26347 5.31240 5.41046 5.52994 5.62426 5.79066 5.98816 6.11892 6.34288 6.46623 6.95895 7.17419 7.64934 8.62397 9.28278 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026902 B = 0.002057 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.575927 B =13607.432644 C =14151.890353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.415 6.415 4 C 0.058 3.942 5 C 0.054 3.946 6 O -0.385 6.385 7 C 0.075 3.925 8 H 0.118 0.882 9 C -0.172 4.172 10 C 0.507 3.493 11 O -0.579 6.579 12 N -0.601 5.601 13 C 0.104 3.896 14 C -0.114 4.114 15 C -0.081 4.081 16 C 0.168 3.832 17 N -0.640 5.640 18 C -0.228 4.228 19 H 0.080 0.920 20 C -0.068 4.068 21 N -0.953 5.953 22 Si 0.972 3.028 23 H -0.290 1.290 24 H -0.296 1.296 25 H -0.268 1.268 26 C 0.129 3.871 27 C -0.088 4.088 28 C 0.125 3.875 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.095 0.905 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.099 0.901 41 H 0.120 0.880 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.030 0.970 46 H 0.020 0.980 47 H 0.246 0.754 48 H 0.053 0.947 49 H 0.048 0.952 50 H 0.053 0.947 51 H 0.054 0.946 52 H 0.076 0.924 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.962 -23.149 -18.734 30.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.335 6.335 4 C -0.018 4.018 5 C -0.022 4.022 6 O -0.304 6.304 7 C 0.015 3.985 8 H 0.135 0.865 9 C -0.229 4.229 10 C 0.296 3.704 11 O -0.458 6.458 12 N -0.334 5.334 13 C -0.017 4.017 14 C -0.152 4.152 15 C -0.082 4.082 16 C 0.043 3.957 17 N -0.367 5.367 18 C -0.357 4.357 19 H 0.098 0.902 20 C -0.261 4.261 21 N -0.602 5.602 22 Si 0.801 3.199 23 H -0.218 1.218 24 H -0.223 1.223 25 H -0.192 1.192 26 C 0.005 3.995 27 C -0.126 4.126 28 C 0.002 3.998 29 H 0.078 0.922 30 H 0.111 0.889 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.112 0.888 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.118 0.882 41 H 0.137 0.863 42 H 0.106 0.894 43 H 0.113 0.887 44 H 0.091 0.909 45 H 0.049 0.951 46 H 0.038 0.962 47 H 0.055 0.945 48 H 0.071 0.929 49 H 0.066 0.934 50 H 0.072 0.928 51 H 0.073 0.927 52 H 0.094 0.906 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.233 -23.189 -18.080 29.582 hybrid contribution -0.249 1.182 1.171 1.682 sum 2.984 -22.008 -16.909 27.913 Atomic orbital electron populations 1.21773 0.93771 1.03214 1.02193 1.22616 0.95916 0.83067 1.00882 1.87974 1.22117 1.27830 1.95586 1.22717 0.81299 0.95772 1.01997 1.22934 1.00371 0.92663 0.86264 1.88097 1.81482 1.21386 1.39473 1.21991 0.93190 0.83344 1.00006 0.86495 1.22380 0.94133 1.04397 1.01977 1.21159 0.85268 0.82039 0.81970 1.90676 1.40778 1.65719 1.48596 1.48118 1.36485 1.04989 1.43845 1.22060 0.91731 0.94620 0.93337 1.21756 0.97135 0.98587 0.97760 1.22067 0.96396 0.93356 0.96413 1.22194 0.89444 0.87084 0.97001 1.46391 1.32806 1.33044 1.24414 1.19389 1.10898 1.04478 1.00885 0.90218 1.25545 0.98816 1.02792 0.98951 1.70013 1.24091 1.47021 1.19096 0.85150 0.77541 0.78611 0.78611 1.21782 1.22263 1.19234 1.22788 0.98259 0.88671 0.89799 1.21340 0.97970 0.96351 0.96984 1.21428 0.91341 0.94905 0.92112 0.92214 0.88923 0.93650 0.91442 0.93267 0.88762 0.92832 0.91843 0.88187 0.89167 0.93083 0.88183 0.86257 0.89449 0.88690 0.90893 0.95141 0.96250 0.94482 0.92907 0.93402 0.92820 0.92741 0.90560 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 10.28 71.98 0.74 -1.57 16 2 C 0.05 0.80 6.66 71.98 0.48 1.28 16 3 O -0.41 -9.19 10.31 -144.34 -1.49 -10.68 16 4 C 0.06 0.88 6.32 71.98 0.45 1.33 16 5 C 0.05 0.78 6.13 71.98 0.44 1.22 16 6 O -0.39 -9.34 9.50 -125.64 -1.19 -10.54 16 7 C 0.08 1.48 2.28 29.85 0.07 1.55 16 8 H 0.12 1.46 6.91 -2.39 -0.02 1.45 16 9 C -0.17 -2.52 9.10 71.98 0.65 -1.87 16 10 C 0.51 14.59 7.05 87.66 0.62 15.21 16 11 O -0.58 -22.89 15.92 15.90 0.25 -22.64 16 12 N -0.60 -15.29 2.95 -819.49 -2.42 -17.71 16 13 C 0.10 1.85 5.34 86.26 0.46 2.32 16 14 C -0.11 -2.59 5.06 30.44 0.15 -2.43 16 15 C -0.08 -2.73 0.77 -52.04 -0.04 -2.77 16 16 C 0.17 7.74 6.64 86.31 0.57 8.31 16 17 N -0.64 -32.11 3.53 -722.64 -2.55 -34.67 16 18 C -0.23 -12.80 10.69 84.03 0.90 -11.91 16 19 H 0.08 4.31 7.84 -2.91 -0.02 4.29 16 20 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 21 N -0.95 -58.16 11.44 21.65 0.25 -57.92 16 22 Si 0.97 46.53 29.56 68.60 2.03 48.56 16 23 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 24 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 26 C 0.13 4.80 7.72 86.32 0.67 5.47 16 27 C -0.09 -3.06 5.21 30.60 0.16 -2.90 16 28 C 0.12 3.77 6.29 86.42 0.54 4.32 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 0.85 8.08 -2.39 -0.02 0.83 16 37 H 0.10 0.74 7.96 -2.39 -0.02 0.72 16 38 H 0.09 1.16 5.02 -2.39 -0.01 1.15 16 39 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.10 0.84 7.96 -2.39 -0.02 0.83 16 41 H 0.12 1.28 4.56 -2.39 -0.01 1.27 16 42 H 0.09 1.40 8.07 -2.39 -0.02 1.38 16 43 H 0.09 1.91 8.12 -2.39 -0.02 1.89 16 44 H 0.07 1.61 7.36 -2.39 -0.02 1.59 16 45 H 0.03 1.63 7.15 -2.39 -0.02 1.61 16 46 H 0.02 0.91 8.09 -2.38 -0.02 0.89 16 47 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 48 H 0.05 1.78 8.07 -2.39 -0.02 1.76 16 49 H 0.05 1.72 7.41 -2.39 -0.02 1.70 16 50 H 0.05 2.22 8.01 -2.39 -0.02 2.20 16 51 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 52 H 0.08 2.18 7.49 -2.39 -0.02 2.17 16 53 H 0.07 2.44 7.00 -2.39 -0.02 2.42 16 Total: -1.00 -82.05 412.31 3.09 -78.96 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.87 Total: 12.52 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: 7.34 Total: 14.10 kcal Atomic # 7 Polarization: -105.57 SS G_CDS: -4.72 Total: -110.29 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -2.43 Total: -43.85 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -82.05 3.09 -78.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753677899.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.075 kcal (2) G-P(sol) polarization free energy of solvation -82.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds