Wall clock time and date at job start Sat Apr 11 2020 06:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42895 * 109.47255 * 2 1 4 4 C 1.42904 * 114.00294 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47224 * 179.97438 * 4 3 2 6 6 O 1.42899 * 109.46889 * 65.00060 * 5 4 3 7 7 C 1.42905 * 113.99778 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.46728 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.46997 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47240 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00040 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99614 * 179.97438 * 10 9 8 13 13 C 1.46670 * 125.33561 * 180.02562 * 12 10 9 14 14 C 1.53717 * 107.94553 * 180.54786 * 13 12 10 15 15 H 1.08998 * 112.56615 * 139.71369 * 14 13 12 16 16 C 1.53689 * 109.34344 * 266.25425 * 14 13 12 17 17 N 1.47171 * 107.73863 * 128.68981 * 16 14 13 18 18 C 1.36935 * 125.25722 * 180.39562 * 17 16 14 19 19 H 1.07996 * 119.99939 * 179.14033 * 18 17 16 20 20 C 1.38811 * 119.99939 * 359.14350 * 18 17 16 21 21 N 1.31625 * 120.00186 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00129 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47032 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.46872 * 120.00059 * 22 20 18 25 25 H 1.48500 * 109.47033 * 239.99883 * 22 20 18 26 26 C 1.46745 * 109.40655 * 359.65686 * 17 16 14 27 27 C 1.53926 * 106.72402 * 342.40471 * 26 17 16 28 28 H 1.08994 * 113.01247 * 150.83840 * 27 26 17 29 29 C 1.46776 * 125.34204 * 359.69990 * 12 10 9 30 30 H 1.09007 * 109.47228 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47164 * 299.99973 * 1 2 3 32 32 H 1.08999 * 109.47365 * 59.99975 * 1 2 3 33 33 H 1.08997 * 109.47094 * 239.99782 * 2 1 3 34 34 H 1.09005 * 109.47019 * 119.99764 * 2 1 3 35 35 H 1.09004 * 109.46812 * 59.99840 * 4 3 2 36 36 H 1.08993 * 109.46802 * 300.00210 * 4 3 2 37 37 H 1.08997 * 109.47286 * 305.00043 * 5 4 3 38 38 H 1.08997 * 109.46848 * 185.00141 * 5 4 3 39 39 H 1.09000 * 109.47187 * 300.00233 * 7 6 5 40 40 H 1.09001 * 109.46558 * 60.00281 * 7 6 5 41 41 H 1.09000 * 109.47486 * 300.00062 * 8 7 6 42 42 H 1.09001 * 109.47362 * 60.00784 * 8 7 6 43 43 H 1.09000 * 109.46866 * 300.00212 * 9 8 7 44 44 H 1.08996 * 109.47261 * 59.99820 * 9 8 7 45 45 H 1.09001 * 109.77070 * 300.17035 * 13 12 10 46 46 H 1.09001 * 109.77214 * 60.92110 * 13 12 10 47 47 H 1.09003 * 109.76028 * 247.19538 * 16 14 13 48 48 H 1.09001 * 109.75767 * 7.91212 * 16 14 13 49 49 H 0.96995 * 120.00072 * 179.97438 * 21 20 18 50 50 H 1.09001 * 110.00618 * 223.08471 * 26 17 16 51 51 H 1.09003 * 110.00895 * 101.72255 * 26 17 16 52 52 H 1.08998 * 110.02322 * 280.77361 * 29 12 10 53 53 H 1.08999 * 110.02689 * 42.18340 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8253 2.9384 -0.0001 6 8 3.3975 3.5461 1.2204 7 6 3.7192 4.9347 1.3222 8 6 3.2160 5.4778 2.6612 9 6 3.5599 6.9648 2.7700 10 6 3.0649 7.4996 4.0890 11 8 2.4937 6.7639 4.8659 12 7 3.2578 8.7953 4.4059 13 6 2.8270 9.4370 5.6524 14 6 3.2368 10.9172 5.5893 15 1 2.4728 11.5804 5.9949 16 6 4.6072 11.0952 6.2618 17 7 5.4744 11.8281 5.3254 18 6 6.7786 12.1728 5.5607 19 1 7.3423 12.7005 4.8056 20 6 7.3760 11.8441 6.7698 21 7 6.6889 11.2015 7.6903 22 14 9.1554 12.3138 7.0906 23 1 9.7012 13.0238 5.9060 24 1 9.2262 13.2033 8.2776 25 1 9.9533 11.0871 7.3429 26 6 4.7294 12.1158 4.0943 27 6 3.5137 11.1717 4.0813 28 1 2.6572 11.5872 3.5505 29 6 3.9378 9.7839 3.5605 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8932 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8340 0.9764 -0.8892 36 1 3.8332 0.9767 0.8908 37 1 3.3499 3.4409 -0.8424 38 1 4.9082 3.0253 -0.0893 39 1 4.7999 5.0628 1.2607 40 1 3.2418 5.4789 0.5073 41 1 2.1353 5.3498 2.7222 42 1 3.6930 4.9337 3.4763 43 1 4.6406 7.0932 2.7087 44 1 3.0826 7.5086 1.9548 45 1 1.7445 9.3580 5.7528 46 1 3.3123 8.9559 6.5016 47 1 4.4966 11.6812 7.1743 48 1 5.0305 10.1193 6.4995 49 1 7.1065 10.9714 8.5349 50 1 5.3585 11.9259 3.2247 51 1 4.3958 13.1536 4.0942 52 1 5.0182 9.6651 3.6427 53 1 3.6267 9.6647 2.5227 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754846620.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:12 Heat of formation + Delta-G solvation = -109.073529 kcal Electronic energy + Delta-G solvation = -29571.045182 eV Core-core repulsion = 25443.353140 eV Total energy + Delta-G solvation = -4127.692042 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.15603 -38.85020 -38.29140 -37.58804 -34.91023 -33.81358 -32.29117 -32.00002 -30.46898 -29.49973 -29.38621 -27.02536 -25.49294 -25.21018 -23.13298 -23.02599 -22.87730 -21.57363 -20.12543 -19.29650 -19.01719 -17.40960 -17.24339 -17.00048 -16.64295 -16.30751 -16.02849 -15.80520 -15.28194 -15.11295 -14.69339 -14.46092 -14.00001 -13.73527 -13.63621 -13.52518 -13.12593 -13.01456 -12.71302 -12.62180 -12.28330 -12.10336 -11.98222 -11.91873 -11.77925 -11.66905 -11.49231 -11.47648 -11.33616 -11.10001 -10.93699 -10.89821 -10.85277 -10.41457 -10.11520 -10.07902 -9.95465 -9.86306 -9.80513 -9.66453 -9.57858 -8.63535 -8.28858 -6.86649 -5.75072 -3.09085 2.86668 3.11777 3.30979 3.37491 3.42838 3.45652 3.54168 4.46572 4.56195 4.63428 4.68527 4.79606 4.82807 4.86568 4.86919 4.93557 4.99208 5.00867 5.07658 5.17400 5.20020 5.23196 5.32425 5.36674 5.37846 5.43283 5.48249 5.53088 5.56413 5.59507 5.65747 5.72304 5.78144 5.88123 5.97654 6.05224 6.16943 6.21921 6.28866 6.38710 6.54104 6.56749 6.64409 6.79840 6.83739 7.01845 7.54008 7.55934 7.79086 7.82137 8.22718 8.40965 9.18239 9.79279 10.42860 11.36447 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017097 B = 0.001785 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.309409 B =15678.805386 C =16383.340875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.381 6.381 4 C 0.064 3.936 5 C 0.064 3.936 6 O -0.379 6.379 7 C 0.063 3.937 8 C -0.102 4.102 9 C -0.133 4.133 10 C 0.526 3.474 11 O -0.547 6.547 12 N -0.609 5.609 13 C 0.120 3.880 14 C -0.124 4.124 15 H 0.090 0.910 16 C 0.185 3.815 17 N -0.604 5.604 18 C -0.230 4.230 19 H 0.079 0.921 20 C -0.007 4.007 21 N -0.920 5.920 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.146 3.854 27 C -0.111 4.111 28 H 0.089 0.911 29 C 0.112 3.888 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.058 0.942 46 H 0.072 0.928 47 H 0.046 0.954 48 H 0.050 0.950 49 H 0.252 0.748 50 H 0.037 0.963 51 H 0.021 0.979 52 H 0.078 0.922 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.986 -15.527 -17.722 25.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.301 6.301 4 C -0.013 4.013 5 C -0.013 4.013 6 O -0.298 6.298 7 C -0.014 4.014 8 C -0.140 4.140 9 C -0.173 4.173 10 C 0.315 3.685 11 O -0.426 6.426 12 N -0.342 5.342 13 C -0.002 4.002 14 C -0.143 4.143 15 H 0.109 0.891 16 C 0.060 3.940 17 N -0.330 5.330 18 C -0.359 4.359 19 H 0.097 0.903 20 C -0.203 4.203 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.218 1.218 26 C 0.020 3.980 27 C -0.131 4.131 28 H 0.107 0.893 29 C -0.011 4.011 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.076 0.924 46 H 0.091 0.909 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.063 0.937 50 H 0.055 0.945 51 H 0.039 0.961 52 H 0.097 0.903 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.358 -15.955 -17.004 25.125 hybrid contribution 1.390 0.230 0.005 1.409 sum -7.968 -15.725 -16.999 24.490 Atomic orbital electron populations 1.21739 0.93676 1.02162 1.03327 1.22459 0.95794 0.83881 0.99883 1.87979 1.20509 1.26194 1.95370 1.22516 0.82235 0.95708 1.00795 1.22492 0.98275 0.92547 0.87990 1.87962 1.80990 1.23170 1.37672 1.22521 0.98930 0.81846 0.98066 1.21198 1.03190 0.93266 0.96311 1.21511 1.03209 0.96746 0.95804 1.20150 0.79467 0.80299 0.88592 1.90694 1.43260 1.56459 1.52144 1.48296 1.57234 1.08798 1.19874 1.21809 0.98769 0.92829 0.86834 1.23157 1.01256 0.94016 0.95903 0.89149 1.21209 0.83784 0.97306 0.91652 1.44362 1.09915 1.66069 1.12687 1.19076 0.85873 1.31137 0.99774 0.90328 1.24808 0.98420 1.00579 0.96535 1.69965 1.35256 1.44611 1.06920 0.86053 0.84346 0.77603 0.77787 1.20505 1.21728 1.21802 1.21142 0.90817 0.95167 0.90890 1.22938 0.99042 0.94849 0.96285 0.89313 1.22116 0.98041 0.87498 0.93442 0.91168 0.91609 0.91916 0.93638 0.93357 0.91959 0.92357 0.92498 0.91783 0.93218 0.93262 0.90324 0.90290 0.88692 0.88952 0.92383 0.90947 0.93539 0.93180 0.93721 0.94529 0.96139 0.90334 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.28 37.15 0.38 -0.63 16 2 C 0.06 0.42 6.66 37.15 0.25 0.67 16 3 O -0.38 -3.98 10.31 -40.08 -0.41 -4.39 16 4 C 0.06 0.52 6.32 37.16 0.23 0.76 16 5 C 0.06 0.55 6.32 37.16 0.23 0.78 16 6 O -0.38 -4.51 10.31 -40.08 -0.41 -4.92 16 7 C 0.06 0.64 5.94 37.16 0.22 0.86 16 8 C -0.10 -1.24 4.87 -26.73 -0.13 -1.37 16 9 C -0.13 -1.57 4.73 -27.88 -0.13 -1.71 16 10 C 0.53 8.64 7.84 -10.99 -0.09 8.55 16 11 O -0.55 -10.91 16.29 5.56 0.09 -10.82 16 12 N -0.61 -10.04 3.31 -172.16 -0.57 -10.61 16 13 C 0.12 2.10 6.23 -3.58 -0.02 2.07 16 14 C -0.12 -2.19 4.01 -88.61 -0.36 -2.55 16 15 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 16 C 0.19 4.31 4.77 -3.32 -0.02 4.29 16 17 N -0.60 -14.63 3.39 -171.51 -0.58 -15.21 16 18 C -0.23 -6.20 10.25 -15.06 -0.15 -6.35 16 19 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 20 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 21 N -0.92 -26.66 10.25 55.49 0.57 -26.09 16 22 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 26 C 0.15 2.77 6.41 -3.43 -0.02 2.75 16 27 C -0.11 -1.75 4.14 -88.24 -0.37 -2.11 16 28 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 29 C 0.11 1.67 5.87 -3.27 -0.02 1.65 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 42 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.09 0.88 7.88 -51.93 -0.41 0.47 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.07 1.41 7.44 -51.93 -0.39 1.03 16 47 H 0.05 1.22 7.40 -51.93 -0.38 0.83 16 48 H 0.05 1.32 6.58 -51.93 -0.34 0.98 16 49 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 50 H 0.04 0.66 7.97 -51.93 -0.41 0.25 16 51 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 52 H 0.08 1.35 7.76 -51.93 -0.40 0.94 16 53 H 0.06 0.76 7.61 -51.93 -0.40 0.36 16 LS Contribution 420.10 15.07 6.33 6.33 Total: -1.00 -33.65 420.10 -9.97 -43.62 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -9.88 Total: -2.04 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -0.08 Total: 7.37 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -0.58 Total: -51.91 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.74 Total: -20.13 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -33.65 -9.97 -43.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754846620.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.452 kcal (2) G-P(sol) polarization free energy of solvation -33.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds