Wall clock time and date at job start Sat Apr 11 2020 06:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42895 * 109.47255 * 2 1 4 4 C 1.42904 * 114.00294 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47224 * 179.97438 * 4 3 2 6 6 O 1.42899 * 109.46889 * 65.00060 * 5 4 3 7 7 C 1.42905 * 113.99778 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.46728 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.46997 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47240 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00040 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99614 * 179.97438 * 10 9 8 13 13 C 1.46670 * 125.33561 * 180.02562 * 12 10 9 14 14 C 1.53717 * 107.94553 * 180.54786 * 13 12 10 15 15 H 1.08998 * 112.56615 * 139.71369 * 14 13 12 16 16 C 1.53689 * 109.34344 * 266.25425 * 14 13 12 17 17 N 1.47171 * 107.73863 * 128.68981 * 16 14 13 18 18 C 1.36935 * 125.25722 * 180.39562 * 17 16 14 19 19 H 1.07996 * 119.99939 * 179.14033 * 18 17 16 20 20 C 1.38811 * 119.99939 * 359.14350 * 18 17 16 21 21 N 1.31625 * 120.00186 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00129 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47032 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.46872 * 120.00059 * 22 20 18 25 25 H 1.48500 * 109.47033 * 239.99883 * 22 20 18 26 26 C 1.46745 * 109.40655 * 359.65686 * 17 16 14 27 27 C 1.53926 * 106.72402 * 342.40471 * 26 17 16 28 28 H 1.08994 * 113.01247 * 150.83840 * 27 26 17 29 29 C 1.46776 * 125.34204 * 359.69990 * 12 10 9 30 30 H 1.09007 * 109.47228 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47164 * 299.99973 * 1 2 3 32 32 H 1.08999 * 109.47365 * 59.99975 * 1 2 3 33 33 H 1.08997 * 109.47094 * 239.99782 * 2 1 3 34 34 H 1.09005 * 109.47019 * 119.99764 * 2 1 3 35 35 H 1.09004 * 109.46812 * 59.99840 * 4 3 2 36 36 H 1.08993 * 109.46802 * 300.00210 * 4 3 2 37 37 H 1.08997 * 109.47286 * 305.00043 * 5 4 3 38 38 H 1.08997 * 109.46848 * 185.00141 * 5 4 3 39 39 H 1.09000 * 109.47187 * 300.00233 * 7 6 5 40 40 H 1.09001 * 109.46558 * 60.00281 * 7 6 5 41 41 H 1.09000 * 109.47486 * 300.00062 * 8 7 6 42 42 H 1.09001 * 109.47362 * 60.00784 * 8 7 6 43 43 H 1.09000 * 109.46866 * 300.00212 * 9 8 7 44 44 H 1.08996 * 109.47261 * 59.99820 * 9 8 7 45 45 H 1.09001 * 109.77070 * 300.17035 * 13 12 10 46 46 H 1.09001 * 109.77214 * 60.92110 * 13 12 10 47 47 H 1.09003 * 109.76028 * 247.19538 * 16 14 13 48 48 H 1.09001 * 109.75767 * 7.91212 * 16 14 13 49 49 H 0.96995 * 120.00072 * 179.97438 * 21 20 18 50 50 H 1.09001 * 110.00618 * 223.08471 * 26 17 16 51 51 H 1.09003 * 110.00895 * 101.72255 * 26 17 16 52 52 H 1.08998 * 110.02322 * 280.77361 * 29 12 10 53 53 H 1.08999 * 110.02689 * 42.18340 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8253 2.9384 -0.0001 6 8 3.3975 3.5461 1.2204 7 6 3.7192 4.9347 1.3222 8 6 3.2160 5.4778 2.6612 9 6 3.5599 6.9648 2.7700 10 6 3.0649 7.4996 4.0890 11 8 2.4937 6.7639 4.8659 12 7 3.2578 8.7953 4.4059 13 6 2.8270 9.4370 5.6524 14 6 3.2368 10.9172 5.5893 15 1 2.4728 11.5804 5.9949 16 6 4.6072 11.0952 6.2618 17 7 5.4744 11.8281 5.3254 18 6 6.7786 12.1728 5.5607 19 1 7.3423 12.7005 4.8056 20 6 7.3760 11.8441 6.7698 21 7 6.6889 11.2015 7.6903 22 14 9.1554 12.3138 7.0906 23 1 9.7012 13.0238 5.9060 24 1 9.2262 13.2033 8.2776 25 1 9.9533 11.0871 7.3429 26 6 4.7294 12.1158 4.0943 27 6 3.5137 11.1717 4.0813 28 1 2.6572 11.5872 3.5505 29 6 3.9378 9.7839 3.5605 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8932 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8340 0.9764 -0.8892 36 1 3.8332 0.9767 0.8908 37 1 3.3499 3.4409 -0.8424 38 1 4.9082 3.0253 -0.0893 39 1 4.7999 5.0628 1.2607 40 1 3.2418 5.4789 0.5073 41 1 2.1353 5.3498 2.7222 42 1 3.6930 4.9337 3.4763 43 1 4.6406 7.0932 2.7087 44 1 3.0826 7.5086 1.9548 45 1 1.7445 9.3580 5.7528 46 1 3.3123 8.9559 6.5016 47 1 4.4966 11.6812 7.1743 48 1 5.0305 10.1193 6.4995 49 1 7.1065 10.9714 8.5349 50 1 5.3585 11.9259 3.2247 51 1 4.3958 13.1536 4.0942 52 1 5.0182 9.6651 3.6427 53 1 3.6267 9.6647 2.5227 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754846620.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:11 Heat of formation + Delta-G solvation = -131.169584 kcal Electronic energy + Delta-G solvation = -29572.003338 eV Core-core repulsion = 25443.353140 eV Total energy + Delta-G solvation = -4128.650199 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.51483 -39.80302 -39.42178 -38.35179 -36.55325 -34.78088 -34.07863 -32.64825 -31.92752 -31.06249 -30.17368 -28.20689 -27.03202 -26.78261 -24.48490 -23.68089 -23.50903 -22.59640 -21.80838 -20.74329 -20.26511 -18.85751 -18.19702 -17.98846 -17.85024 -17.37387 -17.07416 -16.62469 -16.53413 -16.16508 -15.96847 -15.85230 -15.49377 -15.04734 -14.68605 -14.48110 -14.28888 -14.06447 -14.02640 -13.61990 -13.48153 -13.36888 -13.25353 -13.07564 -12.94682 -12.88987 -12.74796 -12.65849 -12.43930 -12.29646 -12.02990 -11.93517 -11.90689 -11.86088 -11.84170 -11.77426 -11.49633 -11.32885 -10.95326 -10.68855 -10.57521 -10.51970 -9.63895 -8.85884 -7.84127 -5.18810 1.46134 1.46338 1.56803 1.59937 1.98181 2.50227 2.72119 2.76503 3.32563 3.35519 3.57022 3.70500 3.87403 3.95421 3.99874 4.01106 4.12815 4.17980 4.23994 4.29177 4.32127 4.34624 4.40508 4.47946 4.49511 4.50612 4.54195 4.55075 4.57015 4.61205 4.70733 4.75881 4.77746 4.86963 4.90135 4.95389 5.02664 5.08624 5.11064 5.14539 5.21763 5.25741 5.32182 5.43394 5.50652 5.64564 5.78775 6.21974 6.22726 6.35891 6.55303 7.11497 7.13101 7.81701 8.43423 9.26290 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017097 B = 0.001785 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.309409 B =15678.805386 C =16383.340875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.412 6.412 4 C 0.059 3.941 5 C 0.058 3.942 6 O -0.412 6.412 7 C 0.067 3.933 8 C -0.097 4.097 9 C -0.120 4.120 10 C 0.518 3.482 11 O -0.593 6.593 12 N -0.612 5.612 13 C 0.123 3.877 14 C -0.114 4.114 15 H 0.112 0.888 16 C 0.199 3.801 17 N -0.624 5.624 18 C -0.233 4.233 19 H 0.088 0.912 20 C -0.070 4.070 21 N -0.954 5.954 22 Si 0.975 3.025 23 H -0.260 1.260 24 H -0.296 1.296 25 H -0.298 1.298 26 C 0.139 3.861 27 C -0.094 4.094 28 H 0.135 0.865 29 C 0.113 3.887 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.111 0.889 44 H 0.130 0.870 45 H 0.074 0.926 46 H 0.036 0.964 47 H 0.003 0.997 48 H 0.006 0.994 49 H 0.243 0.757 50 H 0.052 0.948 51 H 0.031 0.969 52 H 0.053 0.947 53 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.185 -15.019 -21.634 27.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.332 6.332 4 C -0.018 4.018 5 C -0.018 4.018 6 O -0.332 6.332 7 C -0.010 4.010 8 C -0.136 4.136 9 C -0.160 4.160 10 C 0.309 3.691 11 O -0.474 6.474 12 N -0.344 5.344 13 C 0.000 4.000 14 C -0.133 4.133 15 H 0.130 0.870 16 C 0.074 3.926 17 N -0.351 5.351 18 C -0.363 4.363 19 H 0.106 0.894 20 C -0.263 4.263 21 N -0.604 5.604 22 Si 0.804 3.196 23 H -0.184 1.184 24 H -0.223 1.223 25 H -0.225 1.225 26 C 0.014 3.986 27 C -0.113 4.113 28 H 0.153 0.847 29 C -0.009 4.009 30 H 0.109 0.891 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.129 0.871 44 H 0.148 0.852 45 H 0.093 0.907 46 H 0.054 0.946 47 H 0.022 0.978 48 H 0.024 0.976 49 H 0.052 0.948 50 H 0.070 0.930 51 H 0.049 0.951 52 H 0.071 0.929 53 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.556 -15.418 -20.981 27.735 hybrid contribution 1.444 0.063 1.221 1.892 sum -8.112 -15.355 -19.759 26.306 Atomic orbital electron populations 1.21769 0.93389 1.03268 1.02428 1.22636 0.96154 0.83034 1.00824 1.87937 1.21834 1.27848 1.95586 1.22694 0.81409 0.95838 1.01818 1.22725 0.99661 0.92550 0.86883 1.87923 1.81688 1.24079 1.39500 1.22512 1.00005 0.81465 0.96976 1.21111 1.01772 0.93665 0.97020 1.21527 1.04226 0.96305 0.93920 1.21057 0.78538 0.79760 0.89780 1.90674 1.45339 1.57451 1.53935 1.48423 1.57084 1.09354 1.19538 1.21649 0.99292 0.92394 0.86677 1.22989 0.98206 0.94634 0.97504 0.87028 1.20825 0.86670 0.94093 0.91030 1.44665 1.09670 1.65884 1.14874 1.19513 0.87311 1.29817 0.99622 0.89381 1.25639 1.02329 1.01501 0.96802 1.70215 1.36647 1.46450 1.07055 0.85050 0.79877 0.76837 0.77847 1.18427 1.22309 1.22529 1.21392 0.91828 0.96402 0.88952 1.23010 0.99013 0.94687 0.94587 0.84678 1.22203 0.96543 0.86480 0.95657 0.89092 0.93166 0.92093 0.91755 0.93265 0.89217 0.92938 0.91891 0.89566 0.91517 0.91222 0.92206 0.93058 0.87070 0.85180 0.90730 0.94568 0.97846 0.97609 0.94756 0.93013 0.95131 0.92893 0.86634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 10.28 71.98 0.74 -1.18 16 2 C 0.05 0.70 6.66 71.98 0.48 1.18 16 3 O -0.41 -8.33 10.31 -144.34 -1.49 -9.82 16 4 C 0.06 0.88 6.32 71.98 0.45 1.33 16 5 C 0.06 0.89 6.32 71.98 0.45 1.34 16 6 O -0.41 -9.40 10.31 -144.34 -1.49 -10.88 16 7 C 0.07 1.21 5.94 71.98 0.43 1.63 16 8 C -0.10 -2.31 4.87 30.60 0.15 -2.16 16 9 C -0.12 -2.54 4.73 29.85 0.14 -2.40 16 10 C 0.52 16.54 7.84 87.66 0.69 17.22 16 11 O -0.59 -24.19 16.29 -3.04 -0.05 -24.24 16 12 N -0.61 -19.28 3.31 -816.98 -2.71 -21.98 16 13 C 0.12 4.30 6.23 86.59 0.54 4.84 16 14 C -0.11 -3.92 4.01 -9.49 -0.04 -3.96 16 15 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 16 C 0.20 9.62 4.77 86.48 0.41 10.03 16 17 N -0.62 -30.28 3.39 -696.53 -2.36 -32.64 16 18 C -0.23 -12.61 10.25 84.03 0.86 -11.75 16 19 H 0.09 4.48 7.83 -2.91 -0.02 4.45 16 20 C -0.07 -3.97 5.48 84.86 0.47 -3.50 16 21 N -0.95 -58.08 10.25 21.65 0.22 -57.86 16 22 Si 0.97 45.61 29.55 68.60 2.03 47.63 16 23 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 25 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 26 C 0.14 4.89 6.41 86.65 0.56 5.45 16 27 C -0.09 -2.59 4.14 -9.25 -0.04 -2.63 16 28 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 29 C 0.11 2.98 5.87 86.73 0.51 3.49 16 30 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 34 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 42 H 0.05 1.47 8.10 -2.39 -0.02 1.45 16 43 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.13 1.82 7.88 -2.39 -0.02 1.80 16 45 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.04 1.51 7.44 -2.39 -0.02 1.49 16 47 H 0.00 0.18 7.40 -2.39 -0.02 0.17 16 48 H 0.01 0.33 6.58 -2.39 -0.02 0.31 16 49 H 0.24 14.56 8.31 -92.71 -0.77 13.79 16 50 H 0.05 1.69 7.97 -2.39 -0.02 1.67 16 51 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 52 H 0.05 1.70 7.76 -2.39 -0.02 1.68 16 53 H 0.12 1.96 7.61 -2.39 -0.02 1.94 16 Total: -1.00 -79.34 420.10 1.81 -77.52 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.85 Total: 13.34 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: 6.80 Total: 18.93 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -4.84 Total: -112.48 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -3.03 Total: -44.94 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -79.34 1.81 -77.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754846620.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.645 kcal (2) G-P(sol) polarization free energy of solvation -79.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds