Wall clock time and date at job start Sat Apr 11 2020 06:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 116.99887 * 2 1 4 4 O 1.20824 * 119.99970 * 0.02562 * 3 2 1 5 5 C 1.50707 * 120.00100 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47039 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.46682 * 180.02562 * 6 5 3 8 8 C 1.53125 * 109.52222 * 175.00032 * 7 6 5 9 9 C 1.53033 * 109.28287 * 177.61979 * 8 7 6 10 10 N 1.46851 * 109.52231 * 300.82460 * 9 8 7 11 11 C 1.46898 * 110.99682 * 185.83477 * 10 9 8 12 12 C 1.53006 * 109.47006 * 170.00115 * 11 10 9 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 O 1.21282 * 120.00025 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00035 * 180.02562 * 13 12 11 16 16 C 1.46497 * 119.99801 * 359.97438 * 15 13 12 17 17 C 1.46504 * 119.99735 * 179.97438 * 15 13 12 18 18 C 1.50697 * 109.47527 * 89.99956 * 17 15 13 19 19 H 1.08009 * 119.99486 * 359.97438 * 18 17 15 20 20 C 1.37868 * 120.00223 * 179.97438 * 18 17 15 21 21 N 1.31520 * 120.00214 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00039 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46965 * 90.00106 * 22 20 18 24 24 H 1.48501 * 109.47201 * 210.00158 * 22 20 18 25 25 H 1.48496 * 109.47104 * 330.00331 * 22 20 18 26 26 C 1.46846 * 111.19864 * 61.73920 * 10 9 8 27 27 C 1.53033 * 109.52460 * 298.25500 * 26 10 9 28 28 H 1.08997 * 109.46516 * 299.99471 * 1 2 3 29 29 H 1.09001 * 109.47021 * 59.99403 * 1 2 3 30 30 H 1.09004 * 109.46583 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46817 * 60.00662 * 5 3 2 32 32 H 1.09000 * 109.47101 * 300.00341 * 5 3 2 33 33 H 1.09004 * 109.47140 * 60.00216 * 6 5 3 34 34 H 1.09000 * 109.47225 * 299.99986 * 6 5 3 35 35 H 1.08994 * 109.52566 * 54.87320 * 7 6 5 36 36 H 1.09005 * 109.50073 * 57.67955 * 8 7 6 37 37 H 1.08991 * 109.50379 * 297.56469 * 8 7 6 38 38 H 1.08989 * 109.46624 * 180.80484 * 9 8 7 39 39 H 1.09002 * 109.45127 * 60.82884 * 9 8 7 40 40 H 1.09001 * 109.47392 * 50.00413 * 11 10 9 41 41 H 1.09001 * 109.47520 * 290.00136 * 11 10 9 42 42 H 1.09001 * 109.47002 * 299.99782 * 12 11 10 43 43 H 1.08993 * 109.46955 * 60.00219 * 12 11 10 44 44 H 1.08999 * 109.46908 * 90.00559 * 16 15 13 45 45 H 1.09000 * 109.47065 * 210.00008 * 16 15 13 46 46 H 1.08990 * 109.47304 * 330.00300 * 16 15 13 47 47 H 1.09004 * 109.46561 * 209.99850 * 17 15 13 48 48 H 1.08998 * 109.47073 * 329.99510 * 17 15 13 49 49 H 0.97003 * 119.99944 * 179.97438 * 21 20 18 50 50 H 1.09002 * 109.46555 * 58.27646 * 26 10 9 51 51 H 1.09001 * 109.46296 * 178.24247 * 26 10 9 52 52 H 1.08997 * 109.50475 * 299.23909 * 27 26 10 53 53 H 1.09002 * 109.50799 * 179.12007 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0001 2.7422 0.0002 7 6 5.5280 2.8222 -0.0011 8 6 5.9637 4.2848 -0.1261 9 6 7.4908 4.3641 -0.0670 10 7 7.9626 3.8010 1.2046 11 6 9.4121 3.9856 1.3564 12 6 9.8263 3.6180 2.7827 13 6 11.3131 3.8080 2.9387 14 8 11.9763 4.1984 2.0012 15 7 11.9061 3.5430 4.1196 16 6 11.1052 3.0709 5.2517 17 6 13.3517 3.7272 4.2710 18 6 13.6334 5.1340 4.7318 19 1 12.8172 5.8223 4.8952 20 6 14.9328 5.5424 4.9449 21 7 15.1787 6.7704 5.3466 22 14 16.3443 4.3517 4.6631 23 1 16.8053 4.4549 3.2552 24 1 17.4655 4.6878 5.5770 25 1 15.8841 2.9659 4.9328 26 6 7.5970 2.3840 1.3260 27 6 6.0731 2.2457 1.3086 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9557 0.7811 -0.8909 32 1 3.9565 0.7806 0.8891 33 1 3.6108 3.2357 0.8907 34 1 3.6100 3.2369 -0.8893 35 1 5.9220 2.2517 -0.8420 36 1 5.5374 4.8629 0.6939 37 1 5.6149 4.6885 -1.0765 38 1 7.8037 5.4054 -0.1414 39 1 7.9160 3.7971 -0.8952 40 1 9.6683 5.0268 1.1606 41 1 9.9363 3.3432 0.6488 42 1 9.3022 4.2605 3.4902 43 1 9.5702 2.5769 2.9785 44 1 11.0615 1.9819 5.2368 45 1 11.5622 3.4033 6.1838 46 1 10.0962 3.4761 5.1771 47 1 13.7327 3.0202 5.0080 48 1 13.8423 3.5534 3.3133 49 1 16.0930 7.0576 5.4969 50 1 8.0219 1.8264 0.4913 51 1 7.9870 1.9874 2.2634 52 1 5.6485 2.7916 2.1511 53 1 5.8023 1.1925 1.3831 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092800423.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:51 Heat of formation + Delta-G solvation = -157.477225 kcal Electronic energy + Delta-G solvation = -29438.058924 eV Core-core repulsion = 25308.267940 eV Total energy + Delta-G solvation = -4129.790984 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.50409 -40.86219 -39.97643 -37.68612 -36.75410 -36.35155 -34.71609 -33.36805 -31.67291 -31.40047 -30.03084 -28.68653 -27.35621 -26.53845 -24.85896 -24.22417 -23.26176 -22.19505 -21.30535 -20.58362 -19.87133 -19.15008 -18.61202 -18.06102 -17.63776 -17.48207 -17.10227 -16.85039 -16.32039 -16.20983 -15.69931 -15.60263 -15.22722 -14.90857 -14.77273 -14.68811 -14.41530 -14.33298 -14.05911 -13.73370 -13.64048 -13.55965 -13.36370 -13.27320 -13.16772 -12.93078 -12.83013 -12.72013 -12.49980 -12.32245 -12.18911 -12.04829 -12.01132 -11.88201 -11.77311 -11.74690 -11.56140 -11.44465 -11.12897 -10.97760 -10.83662 -10.64756 -9.37985 -9.26061 -8.34397 -6.39842 1.19996 1.32425 1.36703 1.45314 1.81246 1.81924 2.29727 2.31193 2.98759 3.00872 3.70983 3.75396 3.81164 3.89291 3.94231 4.02825 4.14441 4.28273 4.29832 4.33428 4.36756 4.40095 4.43209 4.51284 4.57375 4.63268 4.65342 4.68589 4.71502 4.73656 4.79860 4.82500 4.92442 4.95216 4.96999 5.02741 5.03613 5.04734 5.08321 5.18881 5.26067 5.30124 5.34962 5.45926 5.46738 5.61718 5.63133 6.09786 6.23098 6.24191 6.61654 6.71729 6.74332 7.21176 7.43497 8.82688 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.029715 B = 0.001607 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.060160 B =17418.778363 C =17818.168086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.367 6.367 3 C 0.457 3.543 4 O -0.545 6.545 5 C -0.110 4.110 6 C -0.095 4.095 7 C -0.082 4.082 8 C -0.106 4.106 9 C 0.054 3.946 10 N -0.541 5.541 11 C 0.081 3.919 12 C -0.115 4.115 13 C 0.495 3.505 14 O -0.600 6.600 15 N -0.608 5.608 16 C 0.077 3.923 17 C 0.223 3.777 18 C -0.539 4.539 19 H 0.027 0.973 20 C 0.010 3.990 21 N -0.946 5.946 22 Si 0.950 3.050 23 H -0.277 1.277 24 H -0.274 1.274 25 H -0.237 1.237 26 C 0.045 3.955 27 C -0.109 4.109 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.032 0.968 40 H 0.056 0.944 41 H 0.028 0.972 42 H 0.109 0.891 43 H 0.121 0.879 44 H 0.082 0.918 45 H 0.063 0.937 46 H 0.090 0.910 47 H 0.051 0.949 48 H 0.018 0.982 49 H 0.268 0.732 50 H 0.033 0.967 51 H 0.085 0.915 52 H 0.068 0.932 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.773 -19.014 -9.973 35.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C 0.303 3.697 4 O -0.436 6.436 5 C -0.147 4.147 6 C -0.133 4.133 7 C -0.100 4.100 8 C -0.144 4.144 9 C -0.074 4.074 10 N -0.266 5.266 11 C -0.048 4.048 12 C -0.155 4.155 13 C 0.285 3.715 14 O -0.482 6.482 15 N -0.339 5.339 16 C -0.065 4.065 17 C 0.100 3.900 18 C -0.577 4.577 19 H 0.045 0.955 20 C -0.188 4.188 21 N -0.586 5.586 22 Si 0.773 3.227 23 H -0.203 1.203 24 H -0.199 1.199 25 H -0.160 1.160 26 C -0.082 4.082 27 C -0.147 4.147 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.051 0.949 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.127 0.873 43 H 0.139 0.861 44 H 0.100 0.900 45 H 0.082 0.918 46 H 0.109 0.891 47 H 0.069 0.931 48 H 0.036 0.964 49 H 0.077 0.923 50 H 0.051 0.949 51 H 0.103 0.897 52 H 0.087 0.913 53 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -28.773 -18.180 -9.992 35.472 hybrid contribution 1.208 0.314 -0.629 1.398 sum -27.565 -17.866 -10.621 34.523 Atomic orbital electron populations 1.23499 0.75255 1.05523 1.02300 1.86516 1.24697 1.33372 1.83776 1.24535 0.93473 0.80830 0.70912 1.90672 1.68357 1.37519 1.47012 1.21603 0.85024 1.00161 1.07948 1.21356 0.94904 0.94060 1.02932 1.21171 0.93953 0.96127 0.98758 1.21587 0.93313 0.97067 1.02412 1.22101 0.96526 0.99467 0.89303 1.61930 1.12028 1.17971 1.34668 1.21580 0.87540 1.00693 0.94972 1.21560 0.89114 1.05539 0.99242 1.21408 0.91599 0.76573 0.81958 1.90630 1.67708 1.48453 1.41363 1.47986 1.09039 1.64809 1.12100 1.21983 0.95953 1.00304 0.88268 1.19325 0.79172 0.95103 0.96387 1.21598 0.93102 0.97671 1.45377 0.95476 1.25885 1.01846 0.97115 0.93963 1.70061 1.21399 1.19261 1.47904 0.85682 0.78285 0.80449 0.78320 1.20272 1.19910 1.15971 1.22301 0.97258 0.87117 1.01554 1.21726 0.93278 1.02105 0.97587 0.92218 0.92206 0.85276 0.85503 0.85389 0.92007 0.91845 0.90201 0.91680 0.90648 0.91717 0.94932 0.92579 0.95399 0.87265 0.86108 0.89989 0.91773 0.89150 0.93109 0.96434 0.92267 0.94900 0.89670 0.91340 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 113.37 1.20 1.44 16 2 O -0.37 -4.73 10.57 -51.40 -0.54 -5.27 16 3 C 0.46 6.64 7.96 71.24 0.57 7.20 16 4 O -0.55 -11.76 15.73 21.97 0.35 -11.41 16 5 C -0.11 -0.87 5.57 29.85 0.17 -0.70 16 6 C -0.09 -1.03 3.98 30.59 0.12 -0.91 16 7 C -0.08 -0.88 2.25 -10.71 -0.02 -0.91 16 8 C -0.11 -1.55 5.38 30.65 0.16 -1.39 16 9 C 0.05 1.03 5.46 86.32 0.47 1.50 16 10 N -0.54 -11.34 4.66 -896.37 -4.17 -15.51 16 11 C 0.08 2.22 4.25 86.31 0.37 2.59 16 12 C -0.11 -3.09 4.18 29.85 0.12 -2.96 16 13 C 0.50 19.92 7.67 87.66 0.67 20.60 16 14 O -0.60 -30.35 15.56 -3.04 -0.05 -30.40 16 15 N -0.61 -24.55 2.86 -851.15 -2.43 -26.98 16 16 C 0.08 2.12 10.24 127.77 1.31 3.43 16 17 C 0.22 10.94 4.23 85.63 0.36 11.30 16 18 C -0.54 -32.24 9.94 25.60 0.25 -31.99 16 19 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 20 C 0.01 0.58 5.47 84.65 0.46 1.05 16 21 N -0.95 -60.56 13.96 21.44 0.30 -60.26 16 22 Si 0.95 44.79 27.47 68.60 1.88 46.68 16 23 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 24 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16 26 C 0.05 0.69 5.29 86.32 0.46 1.15 16 27 C -0.11 -1.18 5.08 30.65 0.16 -1.02 16 28 H 0.06 0.56 8.13 -2.39 -0.02 0.54 16 29 H 0.06 0.55 8.13 -2.39 -0.02 0.54 16 30 H 0.13 0.34 8.14 -2.38 -0.02 0.32 16 31 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.13 0.54 6.64 -2.39 -0.02 0.53 16 33 H 0.06 0.85 8.10 -2.38 -0.02 0.83 16 34 H 0.06 0.81 8.10 -2.39 -0.02 0.80 16 35 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.06 1.37 8.01 -2.39 -0.02 1.35 16 39 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.06 1.83 7.94 -2.39 -0.02 1.81 16 41 H 0.03 0.83 8.08 -2.39 -0.02 0.81 16 42 H 0.11 2.73 7.40 -2.39 -0.02 2.71 16 43 H 0.12 2.39 6.39 -2.39 -0.02 2.38 16 44 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.06 1.93 8.07 -2.39 -0.02 1.91 16 46 H 0.09 1.98 6.44 -2.39 -0.02 1.96 16 47 H 0.05 2.27 7.13 -2.39 -0.02 2.25 16 48 H 0.02 0.93 6.85 -2.39 -0.02 0.91 16 49 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 50 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 51 H 0.09 1.19 6.21 -2.39 -0.01 1.17 16 52 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 53 H 0.09 0.56 6.71 -2.39 -0.02 0.54 16 Total: -1.00 -83.96 417.05 2.97 -80.98 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 0.81 Total: 11.79 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 6.83 Total: 10.39 kcal Atomic # 7 Polarization: -96.45 SS G_CDS: -6.31 Total: -102.76 kcal Atomic # 8 Polarization: -46.83 SS G_CDS: -0.24 Total: -47.08 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.68 kcal Total: -83.96 2.97 -80.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092800423.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.494 kcal (2) G-P(sol) polarization free energy of solvation -83.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds