Wall clock time and date at job start Sat Apr 11 2020 06:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45200 * 109.46694 * 2 1 4 4 C 1.34233 * 116.99729 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00150 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99909 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.46880 * 180.02562 * 6 4 3 8 8 C 1.53117 * 109.52271 * 65.31845 * 7 6 4 9 9 C 1.53037 * 109.27796 * 177.55807 * 8 7 6 10 10 N 1.46849 * 109.52175 * 300.81781 * 9 8 7 11 11 C 1.46902 * 110.99695 * 185.84066 * 10 9 8 12 12 H 1.09005 * 109.47091 * 297.82848 * 11 10 9 13 13 C 1.53000 * 109.47024 * 177.82979 * 11 10 9 14 14 C 1.50700 * 109.47620 * 57.83086 * 11 10 9 15 15 O 1.21282 * 119.99828 * 30.56727 * 14 11 10 16 16 N 1.34769 * 120.00120 * 210.57384 * 14 11 10 17 17 C 1.46492 * 120.00184 * 354.74702 * 16 14 11 18 18 C 1.46505 * 120.00048 * 174.75492 * 16 14 11 19 19 C 1.50699 * 109.47369 * 89.99371 * 18 16 14 20 20 H 1.08003 * 119.99989 * 359.97438 * 19 18 16 21 21 C 1.37877 * 119.99978 * 180.02562 * 19 18 16 22 22 N 1.31512 * 119.99820 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00173 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46918 * 60.00173 * 23 21 19 25 25 H 1.48497 * 109.47412 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47038 * 300.00176 * 23 21 19 27 27 C 1.46842 * 111.19818 * 61.74629 * 10 9 8 28 28 C 1.53038 * 109.52116 * 298.25444 * 27 10 9 29 29 H 1.08998 * 109.47517 * 299.99964 * 1 2 3 30 30 H 1.09005 * 109.47094 * 60.00329 * 1 2 3 31 31 H 1.09007 * 109.46901 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47517 * 240.00036 * 2 1 3 33 33 H 1.09005 * 109.47094 * 119.99671 * 2 1 3 34 34 H 1.08994 * 109.47116 * 59.99986 * 6 4 3 35 35 H 1.09007 * 109.46803 * 299.99850 * 6 4 3 36 36 H 1.08994 * 109.57766 * 305.15638 * 7 6 4 37 37 H 1.08998 * 109.50602 * 297.49883 * 8 7 6 38 38 H 1.09002 * 109.50732 * 57.61875 * 8 7 6 39 39 H 1.09007 * 109.46217 * 180.80633 * 9 8 7 40 40 H 1.08997 * 109.46452 * 60.83952 * 9 8 7 41 41 H 1.09004 * 109.46991 * 65.82836 * 13 11 10 42 42 H 1.08997 * 109.47269 * 185.83382 * 13 11 10 43 43 H 1.09005 * 109.47145 * 305.83263 * 13 11 10 44 44 H 1.09006 * 109.47201 * 94.51116 * 17 16 14 45 45 H 1.09004 * 109.47510 * 214.50832 * 17 16 14 46 46 H 1.09002 * 109.47396 * 334.50873 * 17 16 14 47 47 H 1.09005 * 109.47011 * 209.99990 * 18 16 14 48 48 H 1.09000 * 109.46885 * 329.99488 * 18 16 14 49 49 H 0.97002 * 120.00100 * 180.02562 * 22 21 19 50 50 H 1.09003 * 109.46294 * 178.24515 * 27 10 9 51 51 H 1.08998 * 109.45567 * 58.26162 * 27 10 9 52 52 H 1.09003 * 109.50465 * 299.23901 * 28 27 10 53 53 H 1.08996 * 109.50662 * 179.11954 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 6 5.4486 2.8574 0.0010 8 6 5.9279 2.2295 -1.3106 9 6 7.4580 2.2079 -1.3308 10 7 7.9698 3.5788 -1.2079 11 6 9.4303 3.6112 -1.3624 12 1 9.8929 3.0268 -0.5670 13 6 9.9196 5.0587 -1.2825 14 6 9.8073 3.0267 -2.6993 15 8 9.0510 3.1312 -3.6417 16 7 10.9846 2.3879 -2.8477 17 6 11.9476 2.3610 -1.7441 18 6 11.3016 1.7206 -4.1129 19 6 11.9993 2.6903 -5.0314 20 1 12.1875 3.7027 -4.7056 21 6 12.3966 2.2855 -6.2881 22 7 12.1661 1.0531 -6.6853 23 14 13.2622 3.4873 -7.4264 24 1 14.5175 3.9576 -6.7876 25 1 13.5822 2.8112 -8.7092 26 1 12.3744 4.6487 -7.6876 27 6 7.5618 4.1857 0.0655 28 6 6.0348 4.2664 0.1274 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 3.5843 3.4694 0.8911 35 1 3.5850 3.4699 -0.8889 36 1 5.7824 2.2474 0.8403 37 1 5.5486 1.2104 -1.3862 38 1 5.5612 2.8183 -2.1514 39 1 7.8027 1.7744 -2.2697 40 1 7.8238 1.6075 -0.4979 41 1 9.7397 5.4482 -0.2804 42 1 10.9871 5.0939 -1.4998 43 1 9.3804 5.6652 -2.0102 44 1 11.8124 1.4467 -1.1662 45 1 12.9608 2.3909 -2.1450 46 1 11.7862 3.2253 -1.0998 47 1 11.9537 0.8685 -3.9207 48 1 10.3804 1.3746 -4.5818 49 1 12.4459 0.7682 -7.5693 50 1 7.9817 5.1887 0.1408 51 1 7.9270 3.5759 0.8918 52 1 5.6696 4.8872 -0.6908 53 1 5.7317 4.7025 1.0792 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130359558.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:14 Heat of formation + Delta-G solvation = -148.161729 kcal Electronic energy + Delta-G solvation = -30809.492428 eV Core-core repulsion = 26680.105394 eV Total energy + Delta-G solvation = -4129.387033 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.71978 -41.18162 -39.51219 -37.77716 -36.57737 -35.92159 -34.70788 -32.90540 -32.26074 -31.69798 -29.82371 -29.00324 -27.43419 -26.04226 -24.96920 -24.08037 -23.66193 -22.74811 -21.63658 -20.65992 -19.86034 -18.70395 -18.67016 -18.05103 -17.69402 -17.50244 -17.24450 -16.76762 -16.36669 -15.90572 -15.62301 -15.52175 -15.16120 -14.88789 -14.61094 -14.59658 -14.36733 -14.12956 -13.88552 -13.77133 -13.57844 -13.50847 -13.31528 -13.18164 -13.04185 -12.84861 -12.82032 -12.76316 -12.59062 -12.54007 -12.50271 -12.37376 -12.19740 -12.14195 -11.75106 -11.69651 -11.68077 -11.52754 -11.27487 -11.02125 -10.65817 -10.40926 -9.42610 -9.22011 -8.23216 -6.38324 1.20476 1.34779 1.40074 1.47205 1.72202 1.82580 2.23224 2.41324 2.93653 3.05735 3.59919 3.62198 3.76808 3.78958 3.98266 4.02757 4.07536 4.08961 4.12932 4.27075 4.32713 4.35316 4.37455 4.43514 4.56989 4.63413 4.64502 4.67996 4.74260 4.75767 4.80389 4.85279 4.89651 4.90964 4.97109 4.97632 5.02067 5.09354 5.13663 5.18122 5.19908 5.22622 5.30778 5.48637 5.54561 5.55160 5.81719 5.99710 6.04939 6.22672 6.69146 6.76046 6.79840 7.27708 7.51817 8.83755 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015498 B = 0.002293 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.231271 B =12206.064125 C =13237.008541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.364 6.364 4 C 0.457 3.543 5 O -0.539 6.539 6 C -0.102 4.102 7 C -0.070 4.070 8 C -0.107 4.107 9 C 0.063 3.937 10 N -0.531 5.531 11 C 0.076 3.924 12 H 0.077 0.923 13 C -0.134 4.134 14 C 0.500 3.500 15 O -0.578 6.578 16 N -0.615 5.615 17 C 0.077 3.923 18 C 0.263 3.737 19 C -0.539 4.539 20 H 0.054 0.946 21 C 0.004 3.996 22 N -0.930 5.930 23 Si 0.970 3.030 24 H -0.258 1.258 25 H -0.278 1.278 26 H -0.278 1.278 27 C 0.049 3.951 28 C -0.103 4.103 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.142 0.858 35 H 0.120 0.880 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.034 0.966 40 H 0.031 0.969 41 H 0.105 0.895 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.095 0.905 47 H 0.022 0.978 48 H -0.009 1.009 49 H 0.267 0.733 50 H 0.100 0.900 51 H 0.042 0.958 52 H 0.073 0.927 53 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.904 5.989 22.970 29.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.281 6.281 4 C 0.302 3.698 5 O -0.429 6.429 6 C -0.139 4.139 7 C -0.089 4.089 8 C -0.145 4.145 9 C -0.065 4.065 10 N -0.258 5.258 11 C -0.036 4.036 12 H 0.095 0.905 13 C -0.191 4.191 14 C 0.288 3.712 15 O -0.457 6.457 16 N -0.347 5.347 17 C -0.065 4.065 18 C 0.141 3.859 19 C -0.578 4.578 20 H 0.072 0.928 21 C -0.195 4.195 22 N -0.570 5.570 23 Si 0.794 3.206 24 H -0.182 1.182 25 H -0.203 1.203 26 H -0.204 1.204 27 C -0.077 4.077 28 C -0.140 4.140 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.160 0.840 35 H 0.138 0.862 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.123 0.877 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.113 0.887 47 H 0.040 0.960 48 H 0.009 0.991 49 H 0.076 0.924 50 H 0.118 0.882 51 H 0.061 0.939 52 H 0.092 0.908 53 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.270 5.864 21.965 29.165 hybrid contribution 1.038 -1.068 -0.882 1.731 sum -17.232 4.796 21.083 27.648 Atomic orbital electron populations 1.21816 0.90400 1.04250 1.03802 1.23225 0.97125 0.79607 1.02168 1.86514 1.24486 1.33276 1.83793 1.24469 0.80391 0.93828 0.71128 1.90664 1.60900 1.44716 1.46616 1.21586 0.94809 0.89363 1.08107 1.21017 0.92732 0.97983 0.97152 1.21639 0.93430 1.01031 0.98432 1.21921 0.96699 0.88968 0.98955 1.61670 1.08657 1.19433 1.36014 1.21618 0.89839 0.99529 0.92573 0.90545 1.21804 1.01129 0.91938 1.04256 1.21208 0.80907 0.77989 0.91133 1.90632 1.52507 1.58945 1.43626 1.48228 1.17519 1.53213 1.15780 1.21950 0.93006 1.02854 0.88706 1.18694 0.94035 0.92137 0.80998 1.21646 1.37832 0.97927 1.00400 0.92824 1.25919 0.96810 0.97274 0.99465 1.70056 1.47978 1.18526 1.20451 0.85435 0.79013 0.78400 0.77770 1.18220 1.20302 1.20353 1.22350 0.97033 1.00550 0.87771 1.21640 0.93400 0.94887 1.04078 0.90825 0.91428 0.88549 0.92230 0.91349 0.84048 0.86234 0.90948 0.92117 0.92457 0.94734 0.95059 0.87685 0.91472 0.92760 0.91783 0.91321 0.88661 0.96042 0.99083 0.92419 0.88154 0.93937 0.90824 0.87504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.29 71.98 0.74 -0.66 16 2 C 0.05 0.83 6.19 71.98 0.45 1.28 16 3 O -0.36 -6.80 10.22 -51.44 -0.53 -7.33 16 4 C 0.46 9.46 7.69 71.24 0.55 10.00 16 5 O -0.54 -15.06 13.75 21.95 0.30 -14.75 16 6 C -0.10 -1.42 5.29 29.85 0.16 -1.26 16 7 C -0.07 -1.30 1.90 -10.71 -0.02 -1.32 16 8 C -0.11 -3.00 5.09 30.65 0.16 -2.85 16 9 C 0.06 2.05 5.14 86.33 0.44 2.50 16 10 N -0.53 -15.60 4.27 -875.50 -3.74 -19.34 16 11 C 0.08 2.33 1.62 44.17 0.07 2.40 16 12 H 0.08 1.98 6.77 -2.38 -0.02 1.97 16 13 C -0.13 -3.29 8.44 71.98 0.61 -2.68 16 14 C 0.50 22.22 5.62 87.66 0.49 22.71 16 15 O -0.58 -32.18 15.27 -3.04 -0.05 -32.22 16 16 N -0.61 -27.73 2.86 -851.13 -2.43 -30.16 16 17 C 0.08 2.45 9.87 127.77 1.26 3.71 16 18 C 0.26 14.95 5.14 85.63 0.44 15.39 16 19 C -0.54 -32.30 9.39 25.60 0.24 -32.06 16 20 H 0.05 3.16 7.81 -2.91 -0.02 3.14 16 21 C 0.00 0.24 5.46 84.65 0.46 0.70 16 22 N -0.93 -58.19 13.29 21.45 0.28 -57.91 16 23 Si 0.97 46.23 29.54 68.60 2.03 48.25 16 24 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 25 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 26 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 27 C 0.05 0.92 5.18 86.33 0.45 1.37 16 28 C -0.10 -1.50 5.38 30.65 0.16 -1.33 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 33 H 0.07 1.08 8.13 -2.38 -0.02 1.06 16 34 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.07 1.43 7.95 -2.39 -0.02 1.42 16 37 H 0.06 1.90 6.05 -2.39 -0.01 1.89 16 38 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.03 1.47 6.18 -2.38 -0.01 1.45 16 40 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.10 1.67 6.58 -2.38 -0.02 1.66 16 42 H 0.07 1.64 7.22 -2.39 -0.02 1.63 16 43 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 45 H 0.07 2.25 8.11 -2.38 -0.02 2.23 16 46 H 0.09 2.30 5.40 -2.39 -0.01 2.29 16 47 H 0.02 1.24 8.07 -2.38 -0.02 1.22 16 48 H -0.01 -0.59 7.50 -2.39 -0.02 -0.61 16 49 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 50 H 0.10 1.51 6.08 -2.39 -0.01 1.49 16 51 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 52 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 53 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -84.73 414.19 3.41 -81.32 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.87 Total: 14.24 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 6.66 Total: 17.89 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -5.88 Total: -107.40 kcal Atomic # 8 Polarization: -54.04 SS G_CDS: -0.27 Total: -54.31 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Total: -84.73 3.41 -81.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130359558.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.842 kcal (2) G-P(sol) polarization free energy of solvation -84.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds