Wall clock time and date at job start Sat Apr 11 2020 06:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 117.00112 * 2 1 4 4 O 1.20836 * 119.99673 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00395 * 179.97438 * 3 2 1 6 6 N 1.46903 * 108.85474 * 316.41314 * 5 3 2 7 7 C 1.46899 * 110.99844 * 56.28376 * 6 5 3 8 8 C 1.53004 * 109.46768 * 170.97723 * 7 6 5 9 9 C 1.50701 * 109.46831 * 180.02562 * 8 7 6 10 10 O 1.21286 * 120.00302 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00241 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99602 * 359.97438 * 11 9 8 13 13 C 1.46494 * 120.00277 * 180.02562 * 11 9 8 14 14 C 1.50696 * 109.47338 * 89.99777 * 13 11 9 15 15 H 1.07995 * 120.00251 * 359.97438 * 14 13 11 16 16 C 1.37886 * 119.99995 * 180.02562 * 14 13 11 17 17 N 1.31510 * 119.99692 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00059 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47137 * 89.99463 * 18 16 14 20 20 H 1.48493 * 109.47361 * 209.99727 * 18 16 14 21 21 H 1.48504 * 109.47035 * 329.99957 * 18 16 14 22 22 C 1.50480 * 108.79861 * 74.92418 * 5 3 2 23 23 C 1.54240 * 108.52759 * 214.87342 * 22 5 3 24 24 C 1.45544 * 112.40124 * 280.01904 * 23 22 5 25 25 C 1.54237 * 112.41058 * 61.93413 * 24 23 22 26 26 C 1.50472 * 108.52068 * 280.00572 * 25 24 23 27 27 C 1.54062 * 112.49514 * 94.15025 * 26 25 24 28 28 H 1.09005 * 109.47275 * 299.99779 * 1 2 3 29 29 H 1.08994 * 109.47145 * 60.00585 * 1 2 3 30 30 H 1.08997 * 109.47045 * 180.02562 * 1 2 3 31 31 H 1.00891 * 110.99653 * 292.33124 * 6 5 3 32 32 H 1.08996 * 109.47213 * 290.97631 * 7 6 5 33 33 H 1.09007 * 109.47216 * 50.97581 * 7 6 5 34 34 H 1.08996 * 109.47179 * 299.99930 * 8 7 6 35 35 H 1.08997 * 109.46891 * 60.00574 * 8 7 6 36 36 H 1.08996 * 109.46900 * 90.00161 * 12 11 9 37 37 H 1.09005 * 109.46916 * 210.00537 * 12 11 9 38 38 H 1.08999 * 109.46888 * 330.00204 * 12 11 9 39 39 H 1.09000 * 109.47042 * 209.99791 * 13 11 9 40 40 H 1.09001 * 109.47306 * 329.99421 * 13 11 9 41 41 H 0.97001 * 119.99865 * 180.02562 * 17 16 14 42 42 H 1.09003 * 109.62425 * 334.58648 * 22 5 3 43 43 H 1.09006 * 109.62605 * 95.16102 * 22 5 3 44 44 H 1.08994 * 108.89526 * 159.26402 * 23 22 5 45 45 H 1.09002 * 108.89434 * 40.76833 * 23 22 5 46 46 H 1.08999 * 108.89327 * 301.17912 * 24 23 22 47 47 H 1.09003 * 108.81649 * 182.64109 * 24 23 22 48 48 H 1.09007 * 109.62902 * 160.29326 * 25 24 23 49 49 H 1.08998 * 109.62815 * 39.71988 * 25 24 23 50 50 H 1.09002 * 108.87390 * 333.37794 * 26 25 24 51 51 H 1.08993 * 108.87698 * 214.92677 * 26 25 24 52 52 H 1.09001 * 108.81346 * 197.42316 * 27 26 25 53 53 H 1.09002 * 108.72384 * 79.08883 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2749 0.0006 6 7 4.0927 0.2944 0.9595 7 6 3.6127 -1.0582 0.6463 8 6 4.3518 -2.0759 1.5175 9 6 3.8599 -3.4636 1.1959 10 8 3.0022 -3.6229 0.3532 11 7 4.3722 -4.5276 1.8453 12 6 5.4078 -4.3352 2.8636 13 6 3.8944 -5.8766 1.5322 14 6 4.7353 -6.4638 0.4281 15 1 5.5444 -5.8894 0.0019 16 6 4.4710 -7.7340 -0.0387 17 7 3.4853 -8.4332 0.4800 18 14 5.5128 -8.4615 -1.4078 19 1 6.6674 -9.1867 -0.8192 20 1 4.6910 -9.4052 -2.2072 21 1 6.0086 -7.3710 -2.2854 22 6 4.0704 0.9300 -1.3746 23 6 5.4057 0.1715 -1.2311 24 6 6.5290 1.0659 -0.9936 25 6 6.3810 1.8595 0.3206 26 6 5.4502 3.0166 0.0781 27 6 3.9912 2.6868 0.4473 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.8567 0.5517 1.9060 32 1 2.5427 -1.1191 0.8449 33 1 3.8001 -1.2759 -0.4052 34 1 5.4218 -2.0151 1.3190 35 1 4.1643 -1.8583 2.5689 36 1 4.9383 -4.1969 3.8375 37 1 6.0552 -5.2116 2.8934 38 1 6.0002 -3.4541 2.6173 39 1 3.9708 -6.5043 2.4201 40 1 2.8542 -5.8280 1.2101 41 1 3.2996 -9.3270 0.1519 42 1 3.3428 0.2976 -1.8834 43 1 4.2284 1.8444 -1.9467 44 1 5.5910 -0.3930 -2.1450 45 1 5.3275 -0.5261 -0.3973 46 1 6.6025 1.7684 -1.8238 47 1 7.4447 0.4762 -0.9487 48 1 7.3558 2.2332 0.6345 49 1 5.9674 1.2127 1.0943 50 1 5.4940 3.2894 -0.9764 51 1 5.7814 3.8666 0.6744 52 1 3.3352 3.4176 -0.0257 53 1 3.8784 2.7621 1.5288 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179384606.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:22 Heat of formation + Delta-G solvation = -124.425660 kcal Electronic energy + Delta-G solvation = -32266.027503 eV Core-core repulsion = 28137.669743 eV Total energy + Delta-G solvation = -4128.357760 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.42648 -40.59081 -39.92665 -37.76654 -36.58868 -36.00602 -34.70693 -33.66170 -32.80542 -30.56764 -29.21693 -28.87501 -27.22819 -26.15388 -25.82472 -24.90337 -23.20041 -22.46284 -21.06144 -20.30147 -19.66189 -18.92459 -18.67557 -18.29989 -17.92136 -17.49538 -17.02702 -16.75092 -16.36719 -15.99106 -15.87120 -15.35911 -15.21524 -14.83146 -14.53557 -14.33452 -14.29576 -14.18009 -13.88115 -13.80828 -13.58306 -13.40128 -13.36789 -13.20511 -13.12178 -12.92297 -12.85738 -12.67061 -12.46064 -12.28587 -12.17714 -12.14049 -11.91648 -11.68350 -11.66466 -11.59370 -11.28501 -11.11310 -10.94884 -10.93036 -10.62339 -10.49594 -9.45993 -9.33719 -8.20334 -6.35049 0.99703 1.37472 1.40396 1.50689 1.64557 1.95267 2.33638 2.46348 3.07749 3.09725 3.43172 3.64462 3.76381 3.93499 4.11692 4.18258 4.18513 4.21918 4.27581 4.33482 4.35547 4.42448 4.44430 4.50589 4.60183 4.66768 4.76605 4.79268 4.80992 4.93136 4.99876 5.02843 5.05104 5.10060 5.19491 5.21968 5.24710 5.27711 5.33288 5.40306 5.48643 5.53796 5.60140 5.63229 5.70690 5.75594 5.89611 5.99360 6.09551 6.28194 6.60350 6.73487 6.88120 7.31619 7.58404 8.86412 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013288 B = 0.003088 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.642638 B = 9063.756153 C = 9808.429470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.349 6.349 3 C 0.422 3.578 4 O -0.534 6.534 5 C 0.148 3.852 6 N -0.637 5.637 7 C 0.056 3.944 8 C -0.116 4.116 9 C 0.493 3.507 10 O -0.597 6.597 11 N -0.613 5.613 12 C 0.078 3.922 13 C 0.259 3.741 14 C -0.540 4.540 15 H 0.054 0.946 16 C 0.006 3.994 17 N -0.930 5.930 18 Si 0.966 3.034 19 H -0.263 1.263 20 H -0.282 1.282 21 H -0.272 1.272 22 C -0.107 4.107 23 C -0.121 4.121 24 C -0.106 4.106 25 C -0.124 4.124 26 C -0.104 4.104 27 C -0.094 4.094 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.354 0.646 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.098 0.902 39 H 0.020 0.980 40 H -0.004 1.004 41 H 0.266 0.734 42 H 0.049 0.951 43 H 0.084 0.916 44 H 0.041 0.959 45 H 0.096 0.904 46 H 0.050 0.950 47 H 0.056 0.944 48 H 0.062 0.938 49 H 0.099 0.901 50 H 0.057 0.943 51 H 0.075 0.925 52 H 0.070 0.930 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.480 24.076 3.734 24.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.265 6.265 3 C 0.264 3.736 4 O -0.422 6.422 5 C 0.055 3.945 6 N -0.270 5.270 7 C -0.073 4.073 8 C -0.156 4.156 9 C 0.282 3.718 10 O -0.478 6.478 11 N -0.344 5.344 12 C -0.064 4.064 13 C 0.138 3.862 14 C -0.579 4.579 15 H 0.072 0.928 16 C -0.192 4.192 17 N -0.570 5.570 18 Si 0.791 3.209 19 H -0.188 1.188 20 H -0.208 1.208 21 H -0.197 1.197 22 C -0.145 4.145 23 C -0.158 4.158 24 C -0.144 4.144 25 C -0.161 4.161 26 C -0.141 4.141 27 C -0.132 4.132 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.127 0.873 31 H 0.174 0.826 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.116 0.884 39 H 0.038 0.962 40 H 0.014 0.986 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.103 0.897 44 H 0.059 0.941 45 H 0.114 0.886 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.117 0.883 50 H 0.076 0.924 51 H 0.093 0.907 52 H 0.088 0.912 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.312 24.015 2.998 24.778 hybrid contribution -1.436 -0.956 -0.681 1.855 sum 3.876 23.059 2.317 23.498 Atomic orbital electron populations 1.23455 0.76814 1.04639 1.02503 1.87034 1.23907 1.32547 1.82976 1.26351 0.94538 0.81304 0.71384 1.90603 1.68139 1.37133 1.46318 1.20982 0.81172 0.95814 0.96580 1.60934 1.59268 1.00547 1.06255 1.22176 0.98064 0.86696 1.00322 1.21526 1.02851 0.88301 1.02886 1.21405 0.81701 0.88013 0.80644 1.90647 1.34806 1.87278 1.35108 1.48190 1.39905 1.07034 1.39287 1.21932 0.90483 1.03433 0.90511 1.18703 0.93847 0.78766 0.94921 1.21729 1.15984 1.00197 1.19981 0.92786 1.25862 0.96592 0.97444 0.99349 1.70054 1.30944 1.11953 1.44034 0.85432 0.78663 0.78063 0.78767 1.18787 1.20786 1.19687 1.21429 0.98499 1.01448 0.93091 1.20577 0.93070 0.99584 1.02568 1.20356 0.97459 0.98393 0.98146 1.21516 0.98888 0.97226 0.98510 1.21227 0.92288 0.98950 1.01676 1.21941 0.98288 0.90875 1.02136 0.91437 0.91876 0.87296 0.82572 0.92047 0.91048 0.86515 0.86433 0.91257 0.91981 0.88366 0.96176 0.98591 0.92484 0.93249 0.89746 0.94058 0.88579 0.93087 0.92570 0.91931 0.88251 0.92412 0.90661 0.91178 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.56 113.37 1.20 1.63 16 2 O -0.35 -9.37 6.59 -51.42 -0.34 -9.71 16 3 C 0.42 10.51 6.43 71.23 0.46 10.97 16 4 O -0.53 -15.28 15.30 21.93 0.34 -14.94 16 5 C 0.15 2.84 0.53 2.32 0.00 2.84 16 6 N -0.64 -10.94 2.37 -476.17 -1.13 -12.07 16 7 C 0.06 1.38 2.67 86.30 0.23 1.61 16 8 C -0.12 -2.83 4.50 29.85 0.13 -2.69 16 9 C 0.49 19.52 7.67 87.66 0.67 20.20 16 10 O -0.60 -30.11 15.56 -3.05 -0.05 -30.15 16 11 N -0.61 -25.22 2.86 -851.13 -2.43 -27.65 16 12 C 0.08 2.20 10.24 127.77 1.31 3.51 16 13 C 0.26 13.98 5.16 85.63 0.44 14.42 16 14 C -0.54 -31.15 9.39 25.60 0.24 -30.91 16 15 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 16 C 0.01 0.36 5.46 84.66 0.46 0.82 16 17 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 18 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 19 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 21 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 22 C -0.11 -2.19 4.26 30.20 0.13 -2.06 16 23 C -0.12 -2.42 4.46 28.74 0.13 -2.29 16 24 C -0.11 -1.70 5.26 28.74 0.15 -1.55 16 25 C -0.12 -1.63 5.61 30.20 0.17 -1.46 16 26 C -0.10 -1.30 5.31 30.14 0.16 -1.14 16 27 C -0.09 -1.46 4.68 31.31 0.15 -1.32 16 28 H 0.07 1.39 8.13 -2.38 -0.02 1.38 16 29 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 30 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.35 4.81 8.53 -89.70 -0.76 4.04 16 32 H 0.06 1.80 5.08 -6.51 -0.03 1.77 16 33 H 0.07 2.13 5.45 -2.38 -0.01 2.12 16 34 H 0.12 2.39 7.14 -2.39 -0.02 2.37 16 35 H 0.12 2.12 8.11 -2.39 -0.02 2.10 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.06 1.88 8.07 -2.38 -0.02 1.86 16 38 H 0.10 1.98 6.44 -2.39 -0.02 1.96 16 39 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 40 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 41 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 42 H 0.05 1.21 7.49 -2.39 -0.02 1.19 16 43 H 0.08 1.55 6.98 -2.38 -0.02 1.53 16 44 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.10 2.09 3.88 -2.39 -0.01 2.08 16 46 H 0.05 0.78 7.47 -2.39 -0.02 0.76 16 47 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 49 H 0.10 1.34 5.57 -2.39 -0.01 1.33 16 50 H 0.06 0.75 6.63 -2.39 -0.02 0.74 16 51 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 52 H 0.07 1.28 7.12 -2.39 -0.02 1.26 16 53 H 0.08 1.05 7.85 -2.39 -0.02 1.03 16 Total: -1.00 -76.53 397.56 4.86 -71.68 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.13 Total: 19.52 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 6.03 Total: 12.58 kcal Atomic # 7 Polarization: -92.67 SS G_CDS: -3.28 Total: -95.95 kcal Atomic # 8 Polarization: -54.75 SS G_CDS: -0.05 Total: -54.80 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -76.53 4.86 -71.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179384606.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.749 kcal (2) G-P(sol) polarization free energy of solvation -76.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds