Wall clock time and date at job start Sat Apr 11 2020 06:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45196 * 109.47311 * 2 1 4 4 C 1.34228 * 117.00159 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00023 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99866 * 180.02562 * 4 3 2 7 7 H 1.08996 * 109.52898 * 59.91524 * 6 4 3 8 8 C 1.53040 * 109.49641 * 180.02562 * 6 4 3 9 9 C 1.53044 * 109.53662 * 181.31454 * 8 6 4 10 10 C 1.53191 * 109.31440 * 298.63203 * 9 8 6 11 11 N 1.46926 * 108.89109 * 54.56430 * 10 9 8 12 12 C 1.34780 * 120.63278 * 126.46534 * 11 10 9 13 13 O 1.21271 * 120.00661 * 179.97438 * 12 11 10 14 14 C 1.50705 * 119.99400 * 0.02562 * 12 11 10 15 15 N 1.46899 * 109.46714 * 179.97438 * 14 12 11 16 16 C 1.46907 * 111.00312 * 293.95094 * 15 14 12 17 17 C 1.46900 * 110.99964 * 170.00481 * 15 14 12 18 18 C 1.53002 * 109.47208 * 189.99827 * 17 15 14 19 19 C 1.53003 * 109.47053 * 179.97438 * 18 17 15 20 20 C 1.50702 * 109.46742 * 179.97438 * 19 18 17 21 21 H 1.07991 * 120.00250 * 0.02562 * 20 19 18 22 22 C 1.37883 * 119.99562 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99799 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00210 * 0.02562 * 22 20 19 25 25 H 1.48492 * 109.47295 * 90.00035 * 24 22 20 26 26 H 1.48494 * 109.47080 * 210.00153 * 24 22 20 27 27 H 1.48501 * 109.46847 * 329.99980 * 24 22 20 28 28 C 1.46957 * 118.71783 * 306.64359 * 11 10 9 29 29 H 1.08997 * 109.47179 * 300.00063 * 1 2 3 30 30 H 1.08996 * 109.47055 * 59.99958 * 1 2 3 31 31 H 1.08997 * 109.47118 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47179 * 239.99937 * 2 1 3 33 33 H 1.09001 * 109.46675 * 119.99758 * 2 1 3 34 34 H 1.08994 * 109.45892 * 61.29593 * 8 6 4 35 35 H 1.09001 * 109.45142 * 301.32822 * 8 6 4 36 36 H 1.09003 * 109.49852 * 178.68467 * 9 8 6 37 37 H 1.08997 * 109.49691 * 58.58900 * 9 8 6 38 38 H 1.09002 * 109.58786 * 174.42474 * 10 9 8 39 39 H 1.08996 * 109.58870 * 294.70753 * 10 9 8 40 40 H 1.08994 * 109.47621 * 299.99921 * 14 12 11 41 41 H 1.09004 * 109.46918 * 60.00053 * 14 12 11 42 42 H 1.08998 * 109.46522 * 59.99941 * 16 15 14 43 43 H 1.08991 * 109.47101 * 179.97438 * 16 15 14 44 44 H 1.09004 * 109.46982 * 300.00620 * 16 15 14 45 45 H 1.09009 * 109.46864 * 309.99560 * 17 15 14 46 46 H 1.08996 * 109.47913 * 69.99426 * 17 15 14 47 47 H 1.08996 * 109.47103 * 299.99937 * 18 17 15 48 48 H 1.09003 * 109.47020 * 59.99944 * 18 17 15 49 49 H 1.08996 * 109.47697 * 300.00286 * 19 18 17 50 50 H 1.09003 * 109.46671 * 60.00443 * 19 18 17 51 51 H 0.96995 * 119.99788 * 180.02562 * 23 22 20 52 52 H 1.09001 * 109.46843 * 293.57352 * 28 11 10 53 53 H 1.08998 * 109.59977 * 173.21569 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9373 0.0012 7 1 3.5838 3.4706 0.8901 8 6 5.4490 2.8580 0.0010 9 6 6.0349 4.2714 0.0348 10 6 5.5904 5.0342 -1.2172 11 7 4.1244 4.9907 -1.3052 12 6 3.4099 6.1268 -1.4293 13 8 2.2004 6.0777 -1.5015 14 6 4.1144 7.4581 -1.4797 15 7 3.1218 8.5323 -1.6173 16 6 2.4346 8.4514 -2.9132 17 6 3.7436 9.8504 -1.4327 18 6 2.6533 10.9193 -1.3340 19 6 3.3009 12.2920 -1.1412 20 6 2.2270 13.3449 -1.0446 21 1 1.1868 13.0631 -1.1134 22 6 2.5727 14.6680 -0.8684 23 7 1.6355 15.5868 -0.7836 24 14 4.3721 15.1555 -0.7501 25 1 4.8932 15.4580 -2.1072 26 1 4.5034 16.3587 0.1101 27 1 5.1500 14.0372 -0.1590 28 6 3.4521 3.6851 -1.2512 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 5.7860 2.3466 -0.9006 35 1 5.7839 2.3050 0.8787 36 1 7.1232 4.2137 0.0582 37 1 5.6785 4.7918 0.9237 38 1 5.9220 6.0704 -1.1507 39 1 6.0235 4.5680 -2.1021 40 1 4.6826 7.6036 -0.5611 41 1 4.7921 7.4785 -2.3332 42 1 1.9244 7.4916 -2.9944 43 1 1.7052 9.2577 -2.9885 44 1 3.1641 8.5443 -3.7177 45 1 4.3344 9.8483 -0.5167 46 1 4.3909 10.0690 -2.2820 47 1 2.0625 10.9213 -2.2500 48 1 2.0061 10.7007 -0.4847 49 1 3.8915 12.2898 -0.2251 50 1 3.9484 12.5108 -1.9904 51 1 1.8787 16.5176 -0.6600 52 1 3.7089 3.1073 -2.1391 53 1 2.3729 3.8311 -1.2071 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338725371.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:36 Heat of formation + Delta-G solvation = -148.434737 kcal Electronic energy + Delta-G solvation = -29882.973817 eV Core-core repulsion = 25753.574945 eV Total energy + Delta-G solvation = -4129.398872 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.98060 -41.09883 -38.98768 -38.05306 -37.55990 -35.55148 -34.25801 -33.50393 -32.95987 -32.14805 -29.80106 -28.80891 -26.69796 -26.27434 -25.22017 -24.00375 -23.04637 -22.64484 -21.51635 -21.26138 -19.96920 -18.92835 -18.77811 -18.25525 -17.82105 -17.37050 -16.92187 -16.81412 -16.42443 -16.24060 -15.78689 -15.61641 -15.28862 -15.10574 -14.84178 -14.72380 -14.67163 -14.56005 -14.12373 -13.92023 -13.66153 -13.59410 -13.58648 -13.28987 -12.97741 -12.85492 -12.67193 -12.60920 -12.57882 -12.51414 -12.24339 -12.01640 -12.00188 -11.76615 -11.70459 -11.58077 -11.57480 -11.54517 -11.39828 -11.21455 -10.73331 -10.69115 -9.73775 -9.20668 -8.26179 -6.30997 0.97349 1.38786 1.41867 1.51376 1.54109 1.63329 1.90577 2.39949 3.00740 3.08995 3.42083 3.51583 3.65792 3.71928 3.96478 3.98429 4.02134 4.07767 4.09193 4.13264 4.26664 4.30091 4.32575 4.38786 4.49854 4.54884 4.57556 4.65206 4.68234 4.73356 4.74541 4.81842 4.86178 4.87891 4.94000 4.99211 5.04314 5.07197 5.08168 5.12381 5.18567 5.34590 5.38583 5.48235 5.56986 5.64042 5.70005 6.04241 6.09603 6.33643 6.38849 6.59180 6.77801 7.19775 7.33319 8.91135 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019605 B = 0.001825 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.874563 B =15341.231551 C =16186.102883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.365 6.365 4 C 0.473 3.527 5 O -0.528 6.528 6 C -0.089 4.089 7 H 0.115 0.885 8 C -0.100 4.100 9 C -0.128 4.128 10 C 0.096 3.904 11 N -0.611 5.611 12 C 0.516 3.484 13 O -0.562 6.562 14 C 0.039 3.961 15 N -0.548 5.548 16 C 0.024 3.976 17 C 0.068 3.932 18 C -0.092 4.092 19 C -0.008 4.008 20 C -0.536 4.536 21 H 0.023 0.977 22 C -0.003 4.003 23 N -0.956 5.956 24 Si 0.959 3.041 25 H -0.266 1.266 26 H -0.286 1.286 27 H -0.239 1.239 28 C 0.128 3.872 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.128 0.872 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.034 0.966 45 H 0.088 0.912 46 H 0.046 0.954 47 H 0.042 0.958 48 H 0.041 0.959 49 H 0.026 0.974 50 H 0.022 0.978 51 H 0.266 0.734 52 H 0.080 0.920 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.724 -34.447 -0.007 36.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.282 6.282 4 C 0.316 3.684 5 O -0.417 6.417 6 C -0.109 4.109 7 H 0.133 0.867 8 C -0.138 4.138 9 C -0.166 4.166 10 C -0.026 4.026 11 N -0.345 5.345 12 C 0.305 3.695 13 O -0.440 6.440 14 C -0.091 4.091 15 N -0.273 5.273 16 C -0.124 4.124 17 C -0.059 4.059 18 C -0.130 4.130 19 C -0.046 4.046 20 C -0.574 4.574 21 H 0.042 0.958 22 C -0.199 4.199 23 N -0.597 5.597 24 Si 0.781 3.219 25 H -0.191 1.191 26 H -0.212 1.212 27 H -0.162 1.162 28 C 0.004 3.996 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.127 0.873 37 H 0.090 0.910 38 H 0.126 0.874 39 H 0.107 0.893 40 H 0.145 0.855 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.052 0.948 45 H 0.106 0.894 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.060 0.940 49 H 0.044 0.956 50 H 0.041 0.959 51 H 0.074 0.926 52 H 0.098 0.902 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.881 -34.677 0.332 36.658 hybrid contribution 0.274 0.509 -0.479 0.751 sum 12.155 -34.168 -0.147 36.266 Atomic orbital electron populations 1.21841 0.90999 1.04364 1.03512 1.23291 0.96772 0.79044 1.02803 1.86566 1.24329 1.33969 1.83317 1.23821 0.80600 0.92603 0.71375 1.90652 1.60905 1.43776 1.46375 1.21507 0.98467 0.88872 1.02091 0.86674 1.21450 0.89777 0.98514 1.04067 1.21942 1.02752 0.93854 0.98063 1.22154 0.77191 1.03678 0.99542 1.48160 1.08457 1.04845 1.73049 1.20981 0.87285 0.86186 0.75057 1.90678 1.15978 1.87117 1.50206 1.22123 0.93768 0.87964 1.05281 1.61573 1.29281 1.02682 1.33734 1.22456 0.98652 1.02852 0.88424 1.22125 0.95553 0.86577 1.01636 1.21316 0.97710 0.93669 1.00294 1.19483 0.95437 0.92847 0.96787 1.21547 0.93657 0.92726 1.49424 0.95849 1.26158 1.03226 0.96385 0.94112 1.70101 1.35647 1.01809 1.52098 0.85534 0.79029 0.78375 0.78934 1.19087 1.21197 1.16170 1.21299 0.98820 0.83505 0.95948 0.91595 0.91658 0.88002 0.90935 0.90961 0.90644 0.90621 0.87262 0.91003 0.87402 0.89299 0.85467 0.89342 0.90979 0.92566 0.94777 0.89382 0.93623 0.93944 0.93984 0.95587 0.95932 0.92575 0.90220 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.29 71.98 0.74 -0.70 16 2 C 0.05 0.73 6.19 71.98 0.45 1.17 16 3 O -0.37 -6.59 10.15 -51.40 -0.52 -7.11 16 4 C 0.47 8.40 7.26 71.24 0.52 8.92 16 5 O -0.53 -11.45 15.73 21.98 0.35 -11.10 16 6 C -0.09 -1.23 2.78 -11.46 -0.03 -1.26 16 7 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 8 C -0.10 -0.99 4.46 30.62 0.14 -0.85 16 9 C -0.13 -0.75 6.08 30.67 0.19 -0.56 16 10 C 0.10 0.68 6.34 86.36 0.55 1.23 16 11 N -0.61 -9.24 2.98 -818.82 -2.44 -11.68 16 12 C 0.52 11.49 7.42 87.66 0.65 12.14 16 13 O -0.56 -17.97 13.72 -3.00 -0.04 -18.01 16 14 C 0.04 0.74 3.79 85.56 0.32 1.07 16 15 N -0.55 -15.55 4.50 -927.02 -4.17 -19.72 16 16 C 0.02 0.70 9.01 127.69 1.15 1.85 16 17 C 0.07 2.01 4.96 86.30 0.43 2.43 16 18 C -0.09 -3.70 5.08 30.60 0.16 -3.55 16 19 C -0.01 -0.36 4.04 29.85 0.12 -0.24 16 20 C -0.54 -31.84 9.66 25.60 0.25 -31.59 16 21 H 0.02 1.55 7.99 -2.92 -0.02 1.53 16 22 C 0.00 -0.17 5.47 84.66 0.46 0.29 16 23 N -0.96 -61.37 13.96 21.45 0.30 -61.07 16 24 Si 0.96 44.05 27.47 68.60 1.88 45.93 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 26 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 27 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 28 C 0.13 2.03 5.64 86.36 0.49 2.51 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.93 8.13 -2.39 -0.02 0.91 16 33 H 0.07 0.92 8.13 -2.39 -0.02 0.90 16 34 H 0.07 0.77 8.13 -2.39 -0.02 0.75 16 35 H 0.08 0.80 8.07 -2.39 -0.02 0.78 16 36 H 0.11 0.20 8.14 -2.39 -0.02 0.19 16 37 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.11 0.45 5.93 -2.39 -0.01 0.43 16 39 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.13 1.81 7.48 -2.39 -0.02 1.79 16 41 H 0.09 1.24 7.92 -2.38 -0.02 1.22 16 42 H 0.07 2.22 5.88 -2.39 -0.01 2.21 16 43 H 0.06 1.83 6.30 -2.39 -0.02 1.82 16 44 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 45 H 0.09 2.29 7.93 -2.38 -0.02 2.27 16 46 H 0.05 1.22 8.12 -2.39 -0.02 1.20 16 47 H 0.04 1.78 6.47 -2.39 -0.02 1.77 16 48 H 0.04 1.83 8.14 -2.39 -0.02 1.82 16 49 H 0.03 1.16 7.20 -2.39 -0.02 1.14 16 50 H 0.02 0.99 7.57 -2.39 -0.02 0.97 16 51 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 52 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 53 H 0.08 1.77 7.01 -2.39 -0.02 1.75 16 Total: -1.00 -80.34 415.75 2.74 -77.60 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.81 Total: 12.29 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 6.57 Total: -7.12 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -6.31 Total: -92.47 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -0.22 Total: -36.22 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.93 kcal Total: -80.34 2.74 -77.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338725371.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.832 kcal (2) G-P(sol) polarization free energy of solvation -80.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds