Wall clock time and date at job start Sat Apr 11 2020 06:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 120.00163 * 2 1 4 4 C 1.50699 * 109.46995 * 270.00117 * 3 2 1 5 5 H 1.08005 * 120.00342 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99984 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00093 * 180.02562 * 6 4 3 8 8 Si 1.86794 * 119.99785 * 359.97438 * 6 4 3 9 9 H 1.48506 * 109.47231 * 90.00561 * 8 6 4 10 10 H 1.48503 * 109.47355 * 210.00333 * 8 6 4 11 11 H 1.48497 * 109.47575 * 330.00404 * 8 6 4 12 12 C 1.34781 * 119.99915 * 180.02562 * 2 1 3 13 13 O 1.21284 * 120.00012 * 180.02562 * 12 2 1 14 14 C 1.50696 * 119.99885 * 359.97438 * 12 2 1 15 15 C 1.53004 * 109.47040 * 180.02562 * 14 12 2 16 16 N 1.46901 * 109.47046 * 180.02562 * 15 14 12 17 17 C 1.46894 * 110.99680 * 174.60755 * 16 15 14 18 18 H 1.09003 * 109.47473 * 28.72036 * 17 16 15 19 19 C 1.52996 * 109.47410 * 268.72137 * 17 16 15 20 20 C 1.53003 * 117.49557 * 14.52255 * 19 17 16 21 21 C 1.53007 * 117.50012 * 305.86594 * 19 17 16 22 22 C 1.53001 * 109.47060 * 148.72151 * 17 16 15 23 23 C 1.53006 * 109.87142 * 183.99086 * 22 17 16 24 24 O 1.42901 * 109.46892 * 180.30699 * 23 22 17 25 25 C 1.54104 * 109.88072 * 304.99923 * 22 17 16 26 26 C 1.54806 * 104.18495 * 117.39227 * 25 22 17 27 27 C 1.54991 * 102.12902 * 339.10443 * 26 25 22 28 28 O 1.43744 * 109.87650 * 62.83259 * 22 17 16 29 29 H 1.08995 * 109.47008 * 270.00241 * 1 2 3 30 30 H 1.09000 * 109.47075 * 30.00276 * 1 2 3 31 31 H 1.09000 * 109.47106 * 150.00049 * 1 2 3 32 32 H 1.09003 * 109.46921 * 29.99810 * 3 2 1 33 33 H 1.08995 * 109.47227 * 149.99988 * 3 2 1 34 34 H 0.96994 * 119.99701 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.47384 * 60.00504 * 14 12 2 36 36 H 1.09004 * 109.46881 * 300.00313 * 14 12 2 37 37 H 1.08998 * 109.47062 * 59.99766 * 15 14 12 38 38 H 1.08999 * 109.46522 * 300.00064 * 15 14 12 39 39 H 1.00895 * 110.99805 * 298.56064 * 16 15 14 40 40 H 1.08996 * 115.55591 * 160.18989 * 19 17 16 41 41 H 1.09002 * 117.49788 * 0.02562 * 20 19 17 42 42 H 1.09001 * 117.49821 * 145.02187 * 20 19 17 43 43 H 1.09000 * 117.49955 * 214.97785 * 21 19 17 44 44 H 1.09004 * 117.49051 * 359.97262 * 21 19 17 45 45 H 1.09000 * 109.46859 * 300.30579 * 23 22 17 46 46 H 1.09001 * 109.46659 * 60.30941 * 23 22 17 47 47 H 0.96700 * 113.99766 * 179.97438 * 24 23 22 48 48 H 1.08998 * 110.48316 * 358.71930 * 25 22 17 49 49 H 1.08995 * 110.59694 * 236.12206 * 25 22 17 50 50 H 1.09001 * 110.90588 * 97.32171 * 26 25 22 51 51 H 1.09001 * 110.90782 * 220.88714 * 26 25 22 52 52 H 1.09003 * 110.62589 * 155.54128 * 27 26 25 53 53 H 1.09003 * 110.61975 * 278.54121 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2418 6 6 3.1270 2.8774 -1.6728 7 7 3.3457 3.2574 -2.9128 8 14 3.7339 3.9286 -0.2530 9 1 5.1071 3.5068 0.1236 10 1 3.7499 5.3553 -0.6648 11 1 2.8275 3.7595 0.9110 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6353 -0.0005 16 7 1.6451 -4.9074 -0.0011 17 6 2.5643 -6.0459 -0.1300 18 1 3.5309 -5.7830 0.2998 19 6 2.7416 -6.3933 -1.6094 20 6 2.2686 -5.3644 -2.6383 21 6 1.4773 -6.6580 -2.4295 22 6 1.9877 -7.2535 0.6118 23 6 2.9831 -8.4147 0.5678 24 8 2.4333 -9.5396 1.2566 25 6 1.6882 -6.8753 2.0754 26 6 0.1555 -7.0494 2.2061 27 6 -0.3084 -6.9696 0.7294 28 8 0.7439 -7.6489 0.0094 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5138 34 1 3.8226 4.0832 -3.0900 35 1 0.7584 -2.5299 -0.8903 36 1 0.7590 -2.5301 0.8897 37 1 3.0063 -3.5775 0.8894 38 1 3.0062 -3.5774 -0.8905 39 1 1.0740 -4.9956 0.8260 40 1 3.6302 -6.9761 -1.8524 41 1 1.8315 -4.4398 -2.2611 42 1 2.8458 -5.2705 -3.5582 43 1 1.5342 -7.4146 -3.2121 44 1 0.5192 -6.5850 -1.9148 45 1 3.1805 -8.6848 -0.4696 46 1 3.9139 -8.1137 1.0485 47 1 3.0115 -10.3146 1.2683 48 1 1.9724 -5.8408 2.2679 49 1 2.2081 -7.5464 2.7590 50 1 -0.0903 -8.0190 2.6392 51 1 -0.2790 -6.2413 2.7946 52 1 -1.2596 -7.4854 0.5974 53 1 -0.3857 -5.9312 0.4069 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339765901.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:42 Heat of formation + Delta-G solvation = -112.405094 kcal Electronic energy + Delta-G solvation = -31594.826491 eV Core-core repulsion = 27466.989981 eV Total energy + Delta-G solvation = -4127.836509 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.65599 -40.65770 -38.30640 -37.31497 -36.68734 -35.86164 -34.70278 -33.28164 -32.46550 -31.32010 -29.88632 -27.37599 -26.74128 -26.15635 -24.77501 -23.56224 -22.91266 -22.50470 -21.60986 -20.45695 -19.78335 -19.15425 -18.57465 -17.97646 -17.51246 -17.25286 -17.10563 -16.81763 -16.56459 -16.06538 -15.79231 -15.50066 -15.18166 -14.91404 -14.78316 -14.66240 -14.35599 -14.29047 -13.89386 -13.70035 -13.64422 -13.47040 -13.37579 -13.19649 -13.01657 -12.76831 -12.59911 -12.52866 -12.36467 -12.22991 -12.01979 -12.01350 -11.89640 -11.75253 -11.71408 -11.47336 -11.03696 -10.88946 -10.84015 -10.82458 -10.66118 -10.16417 -9.47905 -9.37463 -8.34665 -6.39834 1.31894 1.36035 1.44615 1.81949 2.28594 2.30566 2.89459 2.92491 2.99720 3.03057 3.48020 3.70788 3.77136 3.85153 3.92347 4.00770 4.07941 4.13229 4.23442 4.25001 4.27509 4.41030 4.42814 4.44532 4.54911 4.61088 4.63315 4.66160 4.68492 4.75699 4.81581 4.85857 4.93615 4.96755 4.97138 4.99626 5.00366 5.05241 5.09195 5.12378 5.17734 5.29284 5.45619 5.47604 5.59190 5.62834 5.91597 6.13423 6.23416 6.40758 6.61701 6.72018 6.90860 7.21060 7.43835 8.82477 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019631 B = 0.002445 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.989368 B =11449.896328 C =11808.501035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.608 5.608 3 C 0.222 3.778 4 C -0.536 4.536 5 H 0.027 0.973 6 C 0.008 3.992 7 N -0.947 5.947 8 Si 0.950 3.050 9 H -0.277 1.277 10 H -0.275 1.275 11 H -0.237 1.237 12 C 0.496 3.504 13 O -0.598 6.598 14 C -0.117 4.117 15 C 0.082 3.918 16 N -0.670 5.670 17 C 0.109 3.891 18 H 0.056 0.944 19 C -0.150 4.150 20 C -0.186 4.186 21 C -0.137 4.137 22 C 0.112 3.888 23 C 0.086 3.914 24 O -0.578 6.578 25 C -0.148 4.148 26 C -0.146 4.146 27 C 0.034 3.966 28 O -0.357 6.357 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.018 0.982 34 H 0.268 0.732 35 H 0.109 0.891 36 H 0.122 0.878 37 H 0.028 0.972 38 H 0.059 0.941 39 H 0.349 0.651 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.101 0.899 45 H 0.054 0.946 46 H 0.067 0.933 47 H 0.395 0.605 48 H 0.072 0.928 49 H 0.083 0.917 50 H 0.073 0.927 51 H 0.094 0.906 52 H 0.095 0.905 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.319 -25.551 12.497 29.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.339 5.339 3 C 0.100 3.900 4 C -0.574 4.574 5 H 0.045 0.955 6 C -0.189 4.189 7 N -0.587 5.587 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.200 1.200 11 H -0.160 1.160 12 C 0.285 3.715 13 O -0.480 6.480 14 C -0.157 4.157 15 C -0.047 4.047 16 N -0.305 5.305 17 C -0.002 4.002 18 H 0.074 0.926 19 C -0.168 4.168 20 C -0.223 4.223 21 C -0.174 4.174 22 C 0.072 3.928 23 C 0.008 3.992 24 O -0.385 6.385 25 C -0.186 4.186 26 C -0.183 4.183 27 C -0.042 4.042 28 O -0.276 6.276 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.036 0.964 34 H 0.077 0.923 35 H 0.128 0.872 36 H 0.140 0.860 37 H 0.047 0.953 38 H 0.078 0.922 39 H 0.172 0.828 40 H 0.121 0.879 41 H 0.114 0.886 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.120 0.880 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.244 0.756 48 H 0.091 0.909 49 H 0.102 0.898 50 H 0.092 0.908 51 H 0.113 0.887 52 H 0.113 0.887 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.328 -25.103 11.648 28.900 hybrid contribution 1.710 0.694 0.574 1.933 sum -6.618 -24.409 12.222 28.089 Atomic orbital electron populations 1.21982 0.77519 1.04011 1.03016 1.47980 1.08504 1.05951 1.71500 1.19326 0.92755 0.82774 0.95189 1.21574 1.36707 1.06689 0.92458 0.95500 1.25894 0.95337 0.99018 0.98679 1.70060 1.42767 1.24504 1.21343 0.85686 0.79529 0.77702 0.79836 1.20250 1.20001 1.15975 1.21378 0.87801 0.86756 0.75550 1.90637 1.16650 1.88244 1.52470 1.21510 0.98919 0.88923 1.06338 1.21568 0.94530 0.87897 1.00727 1.60484 1.23704 1.00061 1.46291 1.21342 0.94652 0.89729 0.94445 0.92564 1.22194 0.99061 1.03960 0.91633 1.22943 1.04847 0.95245 0.99297 1.22700 0.96225 0.97474 1.00992 1.22189 0.86703 0.92221 0.91731 1.22174 0.94264 0.86199 0.96604 1.86456 1.48995 1.24823 1.78256 1.22976 0.98001 1.01995 0.95628 1.23078 0.94177 1.03443 0.97651 1.23837 0.91804 0.98391 0.90206 1.88971 1.14130 1.68105 1.56378 0.90023 0.91870 0.89085 0.93183 0.96419 0.92280 0.87242 0.86007 0.95332 0.92243 0.82812 0.87917 0.88644 0.90585 0.89905 0.88027 0.92726 0.91451 0.75571 0.90899 0.89848 0.90829 0.88713 0.88694 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.09 10.24 127.77 1.31 3.40 16 2 N -0.61 -24.19 2.86 -851.13 -2.43 -26.62 16 3 C 0.22 10.83 4.23 85.63 0.36 11.20 16 4 C -0.54 -31.85 9.94 25.60 0.25 -31.60 16 5 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 6 C 0.01 0.51 5.47 84.65 0.46 0.97 16 7 N -0.95 -60.53 13.96 21.45 0.30 -60.23 16 8 Si 0.95 44.71 27.47 68.60 1.88 46.59 16 9 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.24 -9.92 6.54 99.48 0.65 -9.27 16 12 C 0.50 19.47 7.67 87.66 0.67 20.14 16 13 O -0.60 -29.70 15.56 -3.04 -0.05 -29.75 16 14 C -0.12 -2.98 4.56 29.85 0.14 -2.84 16 15 C 0.08 2.11 3.85 86.30 0.33 2.44 16 16 N -0.67 -12.95 4.05 -491.58 -1.99 -14.94 16 17 C 0.11 2.09 1.79 44.92 0.08 2.17 16 18 H 0.06 1.14 7.77 -2.39 -0.02 1.12 16 19 C -0.15 -3.16 4.86 -10.79 -0.05 -3.21 16 20 C -0.19 -4.57 9.20 30.62 0.28 -4.29 16 21 C -0.14 -2.96 8.97 30.62 0.27 -2.68 16 22 C 0.11 1.89 0.58 -10.42 -0.01 1.89 16 23 C 0.09 1.29 5.88 71.98 0.42 1.71 16 24 O -0.58 -8.65 12.90 -139.86 -1.80 -10.46 16 25 C -0.15 -2.15 5.39 31.58 0.17 -1.98 16 26 C -0.15 -1.84 6.95 31.89 0.22 -1.62 16 27 C 0.03 0.50 6.99 72.66 0.51 1.01 16 28 O -0.36 -6.95 7.98 -139.86 -1.12 -8.06 16 29 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.06 1.89 8.07 -2.39 -0.02 1.87 16 31 H 0.09 1.95 6.44 -2.39 -0.02 1.93 16 32 H 0.05 2.23 7.13 -2.39 -0.02 2.21 16 33 H 0.02 0.93 6.85 -2.39 -0.02 0.91 16 34 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 35 H 0.11 2.59 7.40 -2.39 -0.02 2.58 16 36 H 0.12 2.18 8.11 -2.39 -0.02 2.16 16 37 H 0.03 0.78 8.10 -2.39 -0.02 0.76 16 38 H 0.06 1.89 6.75 -2.39 -0.02 1.88 16 39 H 0.35 5.57 4.42 -89.70 -0.40 5.17 16 40 H 0.10 1.99 7.84 -2.39 -0.02 1.97 16 41 H 0.10 2.62 5.71 -2.39 -0.01 2.61 16 42 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.10 2.30 6.61 -2.39 -0.02 2.28 16 45 H 0.05 0.84 7.16 -2.39 -0.02 0.82 16 46 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.39 2.39 9.12 -74.06 -0.68 1.72 16 48 H 0.07 1.02 6.72 -2.39 -0.02 1.00 16 49 H 0.08 1.23 7.38 -2.39 -0.02 1.22 16 50 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 52 H 0.09 1.24 8.14 -2.39 -0.02 1.23 16 53 H 0.08 1.09 6.03 -2.39 -0.01 1.07 16 Total: -1.00 -80.91 403.08 0.01 -80.89 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: -0.21 Total: 25.85 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 5.43 Total: -3.29 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -4.12 Total: -101.79 kcal Atomic # 8 Polarization: -45.30 SS G_CDS: -2.97 Total: -48.27 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.88 Total: 46.59 kcal Total: -80.91 0.01 -80.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339765901.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.512 kcal (2) G-P(sol) polarization free energy of solvation -80.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds