Wall clock time and date at job start Sat Apr 11 2020 06:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42895 * 114.00291 * 2 1 4 4 C 1.52994 * 109.47149 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.54259 * 299.99467 * 4 3 2 6 6 O 1.21282 * 120.00435 * 240.00105 * 5 4 3 7 7 N 1.34776 * 119.99936 * 59.99989 * 5 4 3 8 8 C 1.46502 * 119.99710 * 179.97438 * 7 5 4 9 9 C 1.53009 * 109.47028 * 180.02562 * 8 7 5 10 10 C 1.53081 * 109.45003 * 64.78861 * 9 8 7 11 11 C 1.53190 * 109.29209 * 181.24476 * 10 9 8 12 12 N 1.46921 * 108.89311 * 305.57883 * 11 10 9 13 13 C 1.36940 * 120.63187 * 233.51481 * 12 11 10 14 14 H 1.08001 * 120.00319 * 152.61971 * 13 12 11 15 15 C 1.38813 * 119.99903 * 332.62203 * 13 12 11 16 16 N 1.31624 * 120.00070 * 159.34992 * 15 13 12 17 17 Si 1.86800 * 120.00077 * 339.35529 * 15 13 12 18 18 H 1.48494 * 109.47321 * 92.87851 * 17 15 13 19 19 H 1.48501 * 109.47194 * 212.88430 * 17 15 13 20 20 H 1.48509 * 109.46983 * 332.87654 * 17 15 13 21 21 C 1.46923 * 118.74178 * 53.54201 * 12 11 10 22 22 C 1.53035 * 109.46080 * 185.00040 * 9 8 7 23 23 C 1.53182 * 109.54703 * 60.17459 * 4 3 2 24 24 C 1.53281 * 109.06694 * 176.85427 * 23 4 3 25 25 O 1.42898 * 109.45862 * 302.44416 * 24 23 4 26 26 C 1.42903 * 114.10178 * 61.15609 * 25 24 23 27 27 C 1.53099 * 109.41571 * 298.84358 * 26 25 24 28 28 H 1.08998 * 109.46413 * 60.00701 * 1 2 3 29 29 H 1.08995 * 109.47346 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46988 * 300.00653 * 1 2 3 31 31 H 1.08997 * 109.47591 * 59.98850 * 3 2 1 32 32 H 1.09010 * 109.46639 * 299.99520 * 3 2 1 33 33 H 0.96993 * 119.99928 * 0.02562 * 7 5 4 34 34 H 1.08997 * 109.47475 * 60.00515 * 8 7 5 35 35 H 1.09001 * 109.47422 * 299.99562 * 8 7 5 36 36 H 1.08996 * 109.45707 * 304.97826 * 9 8 7 37 37 H 1.08992 * 109.38800 * 61.36895 * 10 9 8 38 38 H 1.09002 * 109.61927 * 301.26174 * 10 9 8 39 39 H 1.08999 * 109.58729 * 185.71870 * 11 10 9 40 40 H 1.09004 * 109.58886 * 65.43758 * 11 10 9 41 41 H 0.97001 * 119.99914 * 180.02562 * 16 15 13 42 42 H 1.09004 * 109.59094 * 66.17180 * 21 12 11 43 43 H 1.09001 * 109.59077 * 186.46452 * 21 12 11 44 44 H 1.09002 * 109.49848 * 58.66468 * 22 9 8 45 45 H 1.08999 * 109.49849 * 298.56276 * 22 9 8 46 46 H 1.09003 * 109.51616 * 296.84635 * 23 4 3 47 47 H 1.09003 * 109.52335 * 57.02793 * 23 4 3 48 48 H 1.08999 * 109.45577 * 182.44792 * 24 23 4 49 49 H 1.08998 * 109.46764 * 62.44283 * 24 23 4 50 50 H 1.09001 * 109.48604 * 178.86088 * 26 25 24 51 51 H 1.09001 * 109.48741 * 58.82783 * 26 25 24 52 52 H 1.08992 * 109.51927 * 297.69961 * 27 26 25 53 53 H 1.08995 * 109.57044 * 177.54132 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9814 0.4372 1.2309 6 8 4.7233 0.9702 2.0287 7 7 3.5558 -0.8236 1.4447 8 6 3.9898 -1.5503 2.6405 9 6 3.3687 -2.9487 2.6409 10 6 3.9134 -3.7488 1.4549 11 6 3.2660 -5.1371 1.4409 12 7 3.4756 -5.7730 2.7486 13 6 4.0397 -7.0177 2.8368 14 1 4.5878 -7.3007 3.7233 15 6 3.9070 -7.9158 1.7866 16 7 4.7488 -8.9209 1.6699 17 14 2.5339 -7.6978 0.5390 18 1 3.0322 -6.9025 -0.6117 19 1 2.0825 -9.0297 0.0619 20 1 1.3951 -6.9880 1.1753 21 6 3.0680 -5.0485 3.9600 22 6 3.7202 -3.6623 3.9483 23 6 3.9902 0.4281 -1.2514 24 6 5.5221 0.3819 -1.2798 25 8 6.0391 1.7138 -1.2511 26 6 5.6838 2.4525 -0.0806 27 6 4.1604 2.5831 -0.0040 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6887 1.8464 0.8898 32 1 1.6887 1.8463 -0.8901 33 1 2.9628 -1.2501 0.8065 34 1 3.6689 -1.0096 3.5308 35 1 5.0765 -1.6359 2.6393 36 1 2.2856 -2.8649 2.5527 37 1 4.9939 -3.8522 1.5539 38 1 3.6808 -3.2294 0.5253 39 1 3.7235 -5.7457 0.6610 40 1 2.1974 -5.0400 1.2489 41 1 4.6563 -9.5482 0.9358 42 1 1.9833 -4.9418 3.9746 43 1 3.3929 -5.5999 4.8424 44 1 3.3506 -3.0792 4.7918 45 1 4.8022 -3.7687 4.0252 46 1 3.5934 -0.5869 -1.2278 47 1 3.6251 0.9424 -2.1404 48 1 5.8534 -0.1172 -2.1904 49 1 5.8851 -0.1677 -0.4113 50 1 6.1318 3.4452 -0.1272 51 1 6.0488 1.9302 0.8038 52 1 3.7987 3.1408 -0.8678 53 1 3.8844 3.1083 0.9103 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354641384.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:03 Heat of formation + Delta-G solvation = -137.669296 kcal Electronic energy + Delta-G solvation = -32342.122909 eV Core-core repulsion = 28213.190862 eV Total energy + Delta-G solvation = -4128.932047 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.02669 -39.91099 -39.00205 -38.71321 -36.47210 -35.24796 -34.49242 -32.84638 -31.99334 -31.88418 -29.29374 -28.53486 -26.94071 -25.79939 -24.59119 -24.36298 -24.17219 -23.15934 -22.31547 -21.10848 -20.26306 -18.78937 -17.96579 -17.52865 -17.46289 -17.18816 -16.95421 -16.71638 -16.59446 -16.07707 -15.93131 -15.75513 -15.59877 -15.31991 -15.17369 -14.86838 -14.78104 -14.51480 -14.24861 -13.98269 -13.70355 -13.40508 -13.37746 -13.29926 -13.19023 -13.00140 -12.84612 -12.52734 -12.35787 -12.25590 -12.21221 -12.10359 -11.73801 -11.65524 -11.59511 -11.54223 -11.32269 -11.20934 -10.82500 -10.65967 -10.59781 -10.36198 -9.98108 -8.91780 -8.15834 -5.47364 1.30397 1.41816 1.51514 1.58995 2.20375 2.42786 2.66089 2.92763 3.06600 3.37524 3.52062 3.55752 3.76423 3.77073 3.85104 3.94720 4.00815 4.03870 4.21973 4.34942 4.38244 4.41093 4.41997 4.52549 4.55332 4.58452 4.61745 4.64334 4.64806 4.67825 4.72612 4.76960 4.79744 4.83242 4.86408 4.95356 5.00579 5.02645 5.05210 5.09103 5.13662 5.18664 5.20156 5.25804 5.49523 5.60617 5.88086 6.13489 6.13810 6.20369 6.61799 6.93892 7.27744 7.64506 8.04478 9.04352 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.003108 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.168519 B = 9007.927239 C = 9137.659485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.408 6.408 3 C 0.078 3.922 4 C -0.076 4.076 5 C 0.519 3.481 6 O -0.579 6.579 7 N -0.706 5.706 8 C 0.134 3.866 9 C -0.077 4.077 10 C -0.118 4.118 11 C 0.121 3.879 12 N -0.621 5.621 13 C -0.250 4.250 14 H 0.048 0.952 15 C -0.039 4.039 16 N -0.960 5.960 17 Si 0.951 3.049 18 H -0.273 1.273 19 H -0.313 1.313 20 H -0.258 1.258 21 C 0.144 3.856 22 C -0.118 4.118 23 C -0.133 4.133 24 C 0.053 3.947 25 O -0.396 6.396 26 C 0.047 3.953 27 C -0.122 4.122 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.414 0.586 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.077 0.923 39 H 0.045 0.955 40 H 0.038 0.962 41 H 0.261 0.739 42 H 0.039 0.961 43 H 0.053 0.947 44 H 0.088 0.912 45 H 0.049 0.951 46 H 0.088 0.912 47 H 0.102 0.898 48 H 0.111 0.889 49 H 0.028 0.972 50 H 0.108 0.892 51 H 0.050 0.950 52 H 0.102 0.898 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.511 27.246 -6.667 29.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.327 6.327 3 C 0.001 3.999 4 C -0.079 4.079 5 C 0.305 3.695 6 O -0.460 6.460 7 N -0.359 5.359 8 C 0.010 3.990 9 C -0.096 4.096 10 C -0.157 4.157 11 C -0.003 4.003 12 N -0.346 5.346 13 C -0.380 4.380 14 H 0.066 0.934 15 C -0.233 4.233 16 N -0.607 5.607 17 Si 0.780 3.220 18 H -0.199 1.199 19 H -0.242 1.242 20 H -0.182 1.182 21 C 0.019 3.981 22 C -0.157 4.157 23 C -0.170 4.170 24 C -0.024 4.024 25 O -0.315 6.315 26 C -0.029 4.029 27 C -0.160 4.160 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.254 0.746 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.107 0.893 45 H 0.068 0.932 46 H 0.106 0.894 47 H 0.120 0.880 48 H 0.129 0.871 49 H 0.046 0.954 50 H 0.126 0.874 51 H 0.068 0.932 52 H 0.120 0.880 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.753 27.375 -6.294 29.421 hybrid contribution -0.662 -0.974 -0.315 1.219 sum -9.415 26.401 -6.609 28.798 Atomic orbital electron populations 1.22882 0.78984 1.03767 1.00935 1.87682 1.21638 1.27785 1.95596 1.22501 0.89519 0.85427 1.02463 1.21008 0.96333 0.97132 0.93425 1.20786 0.79541 0.81845 0.87279 1.90633 1.37955 1.68726 1.48641 1.46127 1.49981 1.14220 1.25560 1.21284 0.98521 0.91337 0.87906 1.21160 1.00743 0.92278 0.95446 1.21944 0.99875 0.95379 0.98510 1.21379 0.97707 0.93786 0.87468 1.44496 1.72243 1.15671 1.02219 1.18882 1.25369 0.90146 1.03575 0.93423 1.25954 1.00468 0.95915 1.00968 1.69987 1.37803 1.18993 1.33880 0.85842 0.81518 0.75325 0.79350 1.19949 1.24186 1.18191 1.21097 0.96788 0.91851 0.88358 1.21872 1.00610 0.96169 0.97080 1.22225 0.95842 1.02139 0.96826 1.22722 0.93597 0.83855 1.02226 1.87884 1.75176 1.25847 1.42577 1.22843 0.94872 0.97351 0.87818 1.21956 0.95919 0.93730 1.04392 0.92417 0.88984 0.93604 0.92513 0.89465 0.74608 0.91403 0.93226 0.89579 0.93488 0.90422 0.93662 0.94457 0.93016 0.94309 0.92886 0.89315 0.93213 0.89389 0.87963 0.87098 0.95401 0.87377 0.93217 0.87972 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -5.79 7.62 -148.98 -1.13 -6.93 16 3 C 0.08 0.97 4.80 71.98 0.35 1.31 16 4 C -0.08 -1.27 0.53 -52.81 -0.03 -1.30 16 5 C 0.52 12.29 5.14 87.66 0.45 12.74 16 6 O -0.58 -17.59 13.85 -3.03 -0.04 -17.63 16 7 N -0.71 -15.97 4.80 -463.05 -2.22 -18.19 16 8 C 0.13 3.35 5.07 86.38 0.44 3.79 16 9 C -0.08 -2.07 2.18 -10.75 -0.02 -2.09 16 10 C -0.12 -3.76 5.25 30.68 0.16 -3.60 16 11 C 0.12 4.94 4.20 86.36 0.36 5.30 16 12 N -0.62 -28.82 2.77 -699.09 -1.94 -30.75 16 13 C -0.25 -14.30 10.03 84.03 0.84 -13.46 16 14 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 15 C -0.04 -2.27 5.23 84.86 0.44 -1.83 16 16 N -0.96 -61.04 13.97 21.65 0.30 -60.73 16 17 Si 0.95 46.21 24.34 68.60 1.67 47.88 16 18 H -0.27 -12.43 6.62 99.48 0.66 -11.77 16 19 H -0.31 -15.53 7.11 99.48 0.71 -14.82 16 20 H -0.26 -11.79 6.64 99.48 0.66 -11.13 16 21 C 0.14 5.33 6.52 86.37 0.56 5.89 16 22 C -0.12 -3.48 5.37 30.67 0.16 -3.32 16 23 C -0.13 -2.08 4.68 30.75 0.14 -1.94 16 24 C 0.05 1.05 6.62 72.08 0.48 1.53 16 25 O -0.40 -8.86 10.77 -148.98 -1.60 -10.47 16 26 C 0.05 0.96 6.55 72.02 0.47 1.43 16 27 C -0.12 -1.90 4.56 30.69 0.14 -1.76 16 28 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.41 8.49 5.01 -92.71 -0.46 8.02 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 35 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.08 2.06 7.15 -2.39 -0.02 2.05 16 39 H 0.05 2.08 4.50 -2.39 -0.01 2.07 16 40 H 0.04 1.43 7.07 -2.38 -0.02 1.41 16 41 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 42 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 44 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.09 1.38 7.16 -2.39 -0.02 1.37 16 47 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.03 0.68 7.38 -2.39 -0.02 0.66 16 50 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 51 H 0.05 1.30 5.81 -2.39 -0.01 1.29 16 52 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 53 H 0.08 1.29 8.02 -2.39 -0.02 1.28 16 Total: -1.00 -73.02 392.88 1.56 -71.46 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.32 Total: 21.11 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 6.20 Total: 4.25 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -3.86 Total: -109.68 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -2.78 Total: -35.02 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.67 Total: 47.88 kcal Total: -73.02 1.56 -71.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354641384.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.210 kcal (2) G-P(sol) polarization free energy of solvation -73.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds