Wall clock time and date at job start Sat Apr 11 2020 06:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 114.00013 * 2 1 4 4 C 1.52995 * 109.47219 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.54641 * 299.99849 * 4 3 2 6 6 O 1.21274 * 120.00071 * 239.82503 * 5 4 3 7 7 N 1.34777 * 119.99569 * 59.82207 * 5 4 3 8 8 C 1.46505 * 119.99818 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46969 * 180.02562 * 8 7 5 10 10 H 1.09004 * 109.52464 * 304.92050 * 9 8 7 11 11 C 1.53352 * 109.68398 * 184.75466 * 9 8 7 12 12 C 1.53037 * 109.61060 * 178.74833 * 11 9 8 13 13 C 1.53194 * 109.31104 * 61.37187 * 12 11 9 14 14 N 1.46926 * 108.77454 * 305.36242 * 13 12 11 15 15 C 1.36935 * 120.63420 * 233.63177 * 14 13 12 16 16 H 1.08001 * 120.00088 * 152.60968 * 15 14 13 17 17 C 1.38817 * 119.99782 * 332.60348 * 15 14 13 18 18 N 1.31618 * 119.99923 * 159.36242 * 17 15 14 19 19 Si 1.86801 * 120.00195 * 339.36341 * 17 15 14 20 20 H 1.48501 * 109.47054 * 92.89675 * 19 17 15 21 21 H 1.48497 * 109.47324 * 212.90179 * 19 17 15 22 22 H 1.48501 * 109.46722 * 332.89954 * 19 17 15 23 23 C 1.46925 * 118.73822 * 53.61351 * 14 13 12 24 24 C 1.53180 * 109.61859 * 60.22300 * 4 3 2 25 25 C 1.53088 * 109.16625 * 176.88817 * 24 4 3 26 26 O 1.42903 * 109.41510 * 302.39374 * 25 24 4 27 27 C 1.42897 * 114.09847 * 61.15472 * 26 25 24 28 28 C 1.53087 * 109.41671 * 298.84407 * 27 26 25 29 29 H 1.08995 * 109.46900 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47189 * 300.00312 * 1 2 3 31 31 H 1.09004 * 109.46844 * 60.00521 * 1 2 3 32 32 H 1.08996 * 109.47024 * 59.99475 * 3 2 1 33 33 H 1.08999 * 109.46983 * 299.99751 * 3 2 1 34 34 H 0.97004 * 120.00291 * 0.02562 * 7 5 4 35 35 H 1.09002 * 109.46673 * 60.00019 * 8 7 5 36 36 H 1.08997 * 109.46945 * 299.99980 * 8 7 5 37 37 H 1.09003 * 109.41983 * 58.70497 * 11 9 8 38 38 H 1.09008 * 109.41936 * 298.78800 * 11 9 8 39 39 H 1.09003 * 109.49698 * 301.42330 * 12 11 9 40 40 H 1.08997 * 109.50033 * 181.32375 * 12 11 9 41 41 H 1.09002 * 109.58607 * 185.58112 * 13 12 11 42 42 H 1.08994 * 109.70423 * 65.22242 * 13 12 11 43 43 H 0.96999 * 119.99917 * 180.02562 * 18 17 15 44 44 H 1.09004 * 109.58551 * 66.17181 * 23 14 13 45 45 H 1.08997 * 109.59252 * 186.45483 * 23 14 13 46 46 H 1.08996 * 109.52114 * 296.80245 * 24 4 3 47 47 H 1.09009 * 109.52010 * 56.98235 * 24 4 3 48 48 H 1.09000 * 109.48042 * 182.40618 * 25 24 4 49 49 H 1.09006 * 109.47987 * 62.37467 * 25 24 4 50 50 H 1.09005 * 109.47782 * 178.85627 * 27 26 25 51 51 H 1.09007 * 109.48139 * 58.82848 * 27 26 25 52 52 H 1.09005 * 109.52246 * 297.70200 * 28 27 26 53 53 H 1.08998 * 109.57447 * 177.55006 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9815 0.4373 1.2309 6 8 4.7258 0.9692 2.0270 7 7 3.5531 -0.8223 1.4463 8 6 3.9863 -1.5487 2.6426 9 6 3.3619 -2.9455 2.6450 10 1 2.2786 -2.8605 2.5585 11 6 3.7154 -3.6671 3.9511 12 6 3.0644 -5.0520 3.9653 13 6 3.6068 -5.8788 2.7952 14 7 3.4002 -5.1276 1.5495 15 6 2.7469 -5.6990 0.4903 16 1 2.2135 -5.0778 -0.2139 17 6 2.7704 -7.0767 0.3218 18 7 1.8509 -7.6656 -0.4131 19 14 4.1070 -8.0950 1.1381 20 1 3.6262 -8.5758 2.4583 21 1 4.4375 -9.2592 0.2776 22 1 5.3198 -7.2592 1.3274 23 6 3.9075 -3.7515 1.4620 24 6 3.9921 0.4296 -1.2514 25 6 5.5219 0.3824 -1.2799 26 8 6.0389 1.7144 -1.2511 27 6 5.6836 2.4529 -0.0805 28 6 4.1602 2.5833 -0.0039 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6885 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 2.9580 -1.2478 0.8094 35 1 3.6672 -1.0061 3.5325 36 1 5.0727 -1.6367 2.6407 37 1 3.3497 -3.0852 4.7971 38 1 4.7978 -3.7739 4.0247 39 1 1.9839 -4.9471 3.8666 40 1 3.2973 -5.5540 4.9043 41 1 3.0749 -6.8287 2.7415 42 1 4.6714 -6.0636 2.9382 43 1 1.8671 -8.6283 -0.5306 44 1 4.9969 -3.7607 1.4976 45 1 3.5763 -3.2987 0.5275 46 1 3.5966 -0.5859 -1.2288 47 1 3.6268 0.9439 -2.1404 48 1 5.8533 -0.1166 -2.1905 49 1 5.8849 -0.1672 -0.4113 50 1 6.1315 3.4456 -0.1272 51 1 6.0487 1.9304 0.8038 52 1 3.7984 3.1411 -0.8677 53 1 3.8842 3.1085 0.9105 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354709800.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:06 Heat of formation + Delta-G solvation = -137.257677 kcal Electronic energy + Delta-G solvation = -32548.693245 eV Core-core repulsion = 28419.779047 eV Total energy + Delta-G solvation = -4128.914198 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.01274 -39.89003 -38.99143 -38.71980 -36.31882 -35.23518 -34.65150 -32.82278 -32.30854 -31.77982 -29.21099 -27.56060 -27.08234 -26.80097 -24.60871 -24.32494 -23.67462 -23.24721 -22.37760 -21.08276 -20.19653 -18.73102 -17.92079 -17.52380 -17.46870 -17.24309 -16.94724 -16.71450 -16.70914 -16.19338 -15.97701 -15.63403 -15.51446 -15.35728 -15.13911 -14.84487 -14.77339 -14.49923 -14.20120 -13.95006 -13.68404 -13.39822 -13.29509 -13.27738 -13.19733 -13.14465 -12.89556 -12.55512 -12.36437 -12.23391 -12.16441 -12.10409 -11.71422 -11.63996 -11.59866 -11.51574 -11.32325 -11.25784 -10.81386 -10.65407 -10.59929 -10.34681 -9.96189 -8.91928 -8.15529 -5.46388 1.29324 1.41214 1.49618 1.59720 2.22959 2.42147 2.66816 2.93884 3.06286 3.32151 3.53188 3.56705 3.77164 3.86823 3.93616 3.96275 4.03274 4.05045 4.21824 4.24373 4.34330 4.38513 4.42622 4.52375 4.54798 4.56245 4.61458 4.63169 4.64643 4.68388 4.77486 4.78177 4.81047 4.82902 4.84146 4.93871 4.98509 5.03634 5.06764 5.07018 5.12944 5.19239 5.25825 5.28146 5.52436 5.59483 5.87808 6.13877 6.14593 6.21613 6.61710 6.92775 7.26743 7.63766 8.04827 9.04207 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013345 B = 0.003329 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.659724 B = 8410.061406 C = 8543.940692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.409 6.409 3 C 0.076 3.924 4 C -0.076 4.076 5 C 0.521 3.479 6 O -0.576 6.576 7 N -0.709 5.709 8 C 0.136 3.864 9 C -0.102 4.102 10 H 0.070 0.930 11 C -0.098 4.098 12 C -0.126 4.126 13 C 0.115 3.885 14 N -0.618 5.618 15 C -0.244 4.244 16 H 0.056 0.944 17 C -0.032 4.032 18 N -0.956 5.956 19 Si 0.942 3.058 20 H -0.275 1.275 21 H -0.313 1.313 22 H -0.266 1.266 23 C 0.156 3.844 24 C -0.134 4.134 25 C 0.056 3.944 26 O -0.395 6.395 27 C 0.048 3.952 28 C -0.121 4.121 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.412 0.588 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.047 0.953 42 H 0.029 0.971 43 H 0.261 0.739 44 H 0.025 0.975 45 H 0.053 0.947 46 H 0.080 0.920 47 H 0.100 0.900 48 H 0.109 0.891 49 H 0.030 0.970 50 H 0.110 0.890 51 H 0.052 0.948 52 H 0.101 0.899 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.003 21.669 3.466 21.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.329 6.329 3 C -0.001 4.001 4 C -0.079 4.079 5 C 0.308 3.692 6 O -0.457 6.457 7 N -0.362 5.362 8 C 0.011 3.989 9 C -0.122 4.122 10 H 0.088 0.912 11 C -0.136 4.136 12 C -0.165 4.165 13 C -0.009 4.009 14 N -0.343 5.343 15 C -0.374 4.374 16 H 0.074 0.926 17 C -0.227 4.227 18 N -0.602 5.602 19 Si 0.772 3.228 20 H -0.202 1.202 21 H -0.242 1.242 22 H -0.190 1.190 23 C 0.031 3.969 24 C -0.172 4.172 25 C -0.021 4.021 26 O -0.314 6.314 27 C -0.028 4.028 28 C -0.159 4.159 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.251 0.749 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.070 0.930 44 H 0.043 0.957 45 H 0.071 0.929 46 H 0.099 0.901 47 H 0.118 0.882 48 H 0.127 0.873 49 H 0.049 0.951 50 H 0.128 0.872 51 H 0.070 0.930 52 H 0.119 0.881 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.687 21.791 3.819 22.188 hybrid contribution -0.261 -1.333 -0.010 1.358 sum 1.426 20.459 3.809 20.859 Atomic orbital electron populations 1.22846 0.79115 1.03389 1.01057 1.87719 1.21572 1.28013 1.95589 1.22537 0.89785 0.85301 1.02471 1.21004 0.96152 0.97313 0.93437 1.20706 0.79583 0.81727 0.87205 1.90611 1.37826 1.68644 1.48609 1.46221 1.49796 1.14487 1.25692 1.21265 0.98848 0.90931 0.87828 1.21754 1.00459 0.92956 0.97054 0.91205 1.21415 1.00783 0.95125 0.96246 1.21895 1.00259 0.96551 0.97784 1.21441 0.97598 0.95153 0.86746 1.44458 1.66580 1.12417 1.10802 1.18870 1.23373 0.90791 1.04352 0.92647 1.25825 0.99790 0.97911 0.99135 1.69953 1.34840 1.09933 1.45460 0.85979 0.81856 0.77828 0.77122 1.20179 1.24190 1.19025 1.21032 0.95492 0.83650 0.96771 1.22177 0.96208 1.01858 0.96962 1.22646 0.93261 0.83930 1.02259 1.87882 1.75080 1.25734 1.42690 1.22857 0.94681 0.97424 0.87872 1.21959 0.96092 0.93449 1.04426 0.89838 0.93233 0.92271 0.92284 0.89575 0.74882 0.91172 0.92222 0.89876 0.91591 0.92651 0.89922 0.93480 0.95280 0.93048 0.95702 0.92872 0.90144 0.88162 0.87261 0.95144 0.87178 0.92950 0.88100 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.76 16 2 O -0.41 -8.26 7.62 -148.98 -1.13 -9.40 16 3 C 0.08 1.25 4.81 71.98 0.35 1.59 16 4 C -0.08 -1.51 0.53 -52.81 -0.03 -1.53 16 5 C 0.52 13.59 5.14 87.66 0.45 14.04 16 6 O -0.58 -18.00 13.84 -3.01 -0.04 -18.05 16 7 N -0.71 -18.61 4.86 -463.06 -2.25 -20.86 16 8 C 0.14 3.60 5.08 86.38 0.44 4.04 16 9 C -0.10 -3.01 2.39 -10.61 -0.03 -3.03 16 10 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 11 C -0.10 -2.63 5.19 30.72 0.16 -2.47 16 12 C -0.13 -4.01 6.08 30.67 0.19 -3.82 16 13 C 0.12 4.79 4.21 86.36 0.36 5.15 16 14 N -0.62 -28.43 2.77 -699.10 -1.94 -30.37 16 15 C -0.24 -13.60 10.03 84.03 0.84 -12.76 16 16 H 0.06 3.34 8.06 -2.91 -0.02 3.32 16 17 C -0.03 -1.84 5.23 84.86 0.44 -1.40 16 18 N -0.96 -59.48 13.97 21.65 0.30 -59.17 16 19 Si 0.94 46.61 24.34 68.60 1.67 48.28 16 20 H -0.28 -12.84 6.62 99.48 0.66 -12.18 16 21 H -0.31 -15.79 7.11 99.48 0.71 -15.08 16 22 H -0.27 -12.70 6.64 99.48 0.66 -12.04 16 23 C 0.16 5.80 5.59 86.36 0.48 6.29 16 24 C -0.13 -2.66 4.67 30.68 0.14 -2.52 16 25 C 0.06 1.26 6.62 72.01 0.48 1.74 16 26 O -0.39 -9.47 10.77 -148.98 -1.60 -11.07 16 27 C 0.05 1.02 6.55 72.01 0.47 1.49 16 28 C -0.12 -2.12 4.56 30.68 0.14 -1.98 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.41 11.03 5.07 -92.71 -0.47 10.56 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.07 1.71 8.14 -2.38 -0.02 1.70 16 39 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.05 2.18 4.50 -2.39 -0.01 2.17 16 42 H 0.03 1.19 7.07 -2.39 -0.02 1.17 16 43 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 44 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.05 2.02 7.13 -2.39 -0.02 2.00 16 46 H 0.08 1.76 7.18 -2.39 -0.02 1.74 16 47 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 48 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.03 0.80 7.38 -2.38 -0.02 0.79 16 50 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 51 H 0.05 1.40 5.80 -2.38 -0.01 1.38 16 52 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 53 H 0.08 1.44 8.03 -2.39 -0.02 1.42 16 Total: -1.00 -69.85 393.14 1.47 -68.38 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 0.32 Total: 25.67 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 6.14 Total: 6.59 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -3.88 Total: -110.40 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -2.78 Total: -38.52 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 1.67 Total: 48.28 kcal Total: -69.85 1.47 -68.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354709800.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.873 kcal (2) G-P(sol) polarization free energy of solvation -69.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds