Wall clock time and date at job start Sat Apr 11 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42901 * 109.46638 * 2 1 4 4 C 1.42905 * 113.99657 * 175.34702 * 3 2 1 5 5 H 1.09000 * 109.46973 * 328.36155 * 4 3 2 6 6 C 1.53001 * 109.46604 * 208.36300 * 4 3 2 7 7 C 1.50701 * 109.47122 * 65.00484 * 6 4 3 8 8 O 1.21280 * 120.00250 * 359.97438 * 7 6 4 9 9 N 1.34777 * 119.99844 * 179.97438 * 7 6 4 10 10 C 1.47218 * 121.11666 * 0.02562 * 9 7 6 11 11 C 1.53231 * 108.75571 * 127.79123 * 10 9 7 12 12 O 1.43106 * 109.34232 * 54.12805 * 11 10 9 13 13 C 1.42489 * 113.96978 * 300.03390 * 12 11 10 14 14 C 1.53440 * 113.81183 * 189.53766 * 13 12 11 15 15 N 1.47679 * 85.97729 * 91.24344 * 14 13 12 16 16 C 1.36938 * 134.45294 * 204.28899 * 15 14 13 17 17 H 1.08001 * 120.00275 * 184.19037 * 16 15 14 18 18 C 1.38815 * 119.99858 * 4.19392 * 16 15 14 19 19 N 1.31617 * 120.00308 * 6.10556 * 18 16 15 20 20 Si 1.86802 * 119.99727 * 186.10649 * 18 16 15 21 21 H 1.48501 * 109.47246 * 94.97262 * 20 18 16 22 22 H 1.48504 * 109.47063 * 214.97345 * 20 18 16 23 23 H 1.48502 * 109.47326 * 334.97528 * 20 18 16 24 24 C 1.47673 * 91.08964 * 24.29074 * 15 14 13 25 25 C 1.47342 * 121.05033 * 179.97438 * 9 7 6 26 26 C 1.53000 * 109.47008 * 88.36213 * 4 3 2 27 27 C 1.53002 * 109.46801 * 64.96684 * 26 4 3 28 28 C 1.53002 * 109.46798 * 184.96276 * 26 4 3 29 29 H 1.09002 * 109.46936 * 299.99884 * 1 2 3 30 30 H 1.08997 * 109.47131 * 60.00405 * 1 2 3 31 31 H 1.09001 * 109.46902 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.46911 * 240.00106 * 2 1 3 33 33 H 1.08997 * 109.47131 * 119.99595 * 2 1 3 34 34 H 1.08992 * 109.47525 * 304.99829 * 6 4 3 35 35 H 1.09000 * 109.46761 * 184.99825 * 6 4 3 36 36 H 1.08995 * 109.58000 * 8.01031 * 10 9 7 37 37 H 1.09005 * 109.58981 * 247.57040 * 10 9 7 38 38 H 1.09007 * 109.49153 * 294.16323 * 11 10 9 39 39 H 1.09007 * 109.49443 * 174.09073 * 11 10 9 40 40 H 1.09006 * 113.78928 * 205.50715 * 14 13 12 41 41 H 1.08997 * 113.79160 * 336.97441 * 14 13 12 42 42 H 0.96997 * 120.00068 * 179.97438 * 19 18 16 43 43 H 1.08992 * 113.78971 * 221.44780 * 24 15 14 44 44 H 1.09002 * 113.89677 * 89.98889 * 24 15 14 45 45 H 1.08991 * 109.74525 * 108.73136 * 25 9 7 46 46 H 1.08998 * 109.74857 * 348.05157 * 25 9 7 47 47 H 1.08996 * 109.47437 * 304.96637 * 26 4 3 48 48 H 1.09007 * 109.46772 * 186.44620 * 27 26 4 49 49 H 1.08995 * 109.46972 * 306.44118 * 27 26 4 50 50 H 1.09002 * 109.47303 * 66.44884 * 27 26 4 51 51 H 1.08997 * 109.46882 * 60.00562 * 28 26 4 52 52 H 1.09004 * 109.46960 * 179.97438 * 28 26 4 53 53 H 1.08996 * 109.47421 * 300.00371 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4268 1.4616 0.1059 5 1 3.8147 0.6335 0.6990 6 6 3.7826 2.7858 0.7849 7 6 3.2767 2.7743 2.2043 8 8 2.6890 1.8029 2.6309 9 7 3.4773 3.8436 2.9999 10 6 4.1870 5.0357 2.5075 11 6 3.3248 6.2718 2.7845 12 8 2.9850 6.3110 4.1741 13 6 2.2521 5.1746 4.6231 14 6 1.6910 5.3210 6.0437 15 7 0.4789 5.8631 5.3972 16 6 -0.5324 6.6941 5.7994 17 1 -1.3637 6.8921 5.1389 18 6 -0.4891 7.2822 7.0561 19 7 0.5778 7.1388 7.8134 20 14 -1.9452 8.2770 7.6724 21 1 -2.8234 7.4097 8.4980 22 1 -1.4562 9.4125 8.4951 23 1 -2.7134 8.7997 6.5140 24 6 0.7945 5.1498 4.1433 25 6 2.9921 3.8575 4.3911 26 6 4.0472 1.4224 -1.2921 27 6 3.5993 2.6528 -2.0835 28 6 5.5726 1.4200 -1.1732 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.3197 3.6090 0.2408 35 1 4.8650 2.9141 0.7860 36 1 4.3579 4.9421 1.4351 37 1 5.1415 5.1326 3.0249 38 1 2.4135 6.2206 2.1885 39 1 3.8822 7.1707 2.5208 40 1 1.5301 4.3708 6.5530 41 1 2.2258 6.0478 6.6549 42 1 0.6081 7.5501 8.6914 43 1 0.6172 5.7407 3.2447 44 1 0.3676 4.1485 4.0854 45 1 3.8365 3.7844 5.0763 46 1 2.3132 3.0203 4.5527 47 1 3.7217 0.5196 -1.8089 48 1 3.9463 2.5684 -3.1135 49 1 2.5113 2.7166 -2.0708 50 1 4.0213 3.5498 -1.6303 51 1 5.8917 0.5435 -0.6093 52 1 6.0147 1.3916 -2.1691 53 1 5.8982 2.3228 -0.6564 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755052236.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:41 Heat of formation + Delta-G solvation = -90.074085 kcal Electronic energy + Delta-G solvation = -31952.916069 eV Core-core repulsion = 27826.047905 eV Total energy + Delta-G solvation = -4126.868164 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.77531 -40.53560 -39.17761 -37.72358 -36.25125 -35.68107 -34.28806 -32.35625 -31.70915 -30.73630 -29.29394 -27.97944 -27.66184 -26.89505 -25.26412 -24.56008 -23.73463 -23.45020 -20.98547 -20.39083 -19.87390 -18.83818 -18.39420 -17.87283 -17.49639 -17.05463 -16.98522 -16.50701 -16.25782 -15.88447 -15.75168 -15.67172 -15.10587 -15.04620 -14.83350 -14.73476 -14.43771 -14.18701 -13.97758 -13.96236 -13.54265 -13.38296 -13.09946 -13.03196 -12.98444 -12.91305 -12.78700 -12.60465 -12.48670 -12.41366 -12.09210 -12.07397 -11.92063 -11.81451 -11.72952 -11.68626 -11.43991 -11.36009 -11.00353 -10.80285 -10.69881 -10.28313 -9.50977 -8.94568 -7.91001 -5.27057 1.43359 1.46239 1.55104 1.66748 1.89689 2.44333 2.70044 2.80515 3.21765 3.32432 3.44163 3.57621 3.74177 3.82036 3.96223 4.05018 4.16137 4.17257 4.20617 4.30164 4.30774 4.34610 4.42884 4.47195 4.51063 4.52762 4.55731 4.65867 4.68566 4.70596 4.72065 4.87174 4.89028 4.91721 4.92894 4.96563 5.06065 5.10719 5.11812 5.13667 5.22874 5.25070 5.28771 5.35775 5.45673 5.50026 5.52120 5.89954 6.36576 6.40140 6.44814 6.87694 7.19504 7.56410 8.50141 9.24206 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016647 B = 0.002806 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.618947 B = 9977.378470 C =10802.789545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.063 3.937 3 O -0.393 6.393 4 C 0.108 3.892 5 H 0.053 0.947 6 C -0.133 4.133 7 C 0.512 3.488 8 O -0.575 6.575 9 N -0.616 5.616 10 C 0.077 3.923 11 C 0.034 3.966 12 O -0.366 6.366 13 C 0.087 3.913 14 C 0.167 3.833 15 N -0.631 5.631 16 C -0.241 4.241 17 H 0.079 0.921 18 C -0.063 4.063 19 N -0.947 5.947 20 Si 0.982 3.018 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.268 1.268 24 C 0.105 3.895 25 C 0.110 3.890 26 C -0.111 4.111 27 C -0.144 4.144 28 C -0.148 4.148 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.035 0.965 34 H 0.117 0.883 35 H 0.140 0.860 36 H 0.132 0.868 37 H 0.096 0.904 38 H 0.045 0.955 39 H 0.132 0.868 40 H 0.038 0.962 41 H 0.059 0.941 42 H 0.250 0.750 43 H 0.045 0.955 44 H 0.041 0.959 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.070 0.930 48 H 0.062 0.938 49 H 0.045 0.955 50 H 0.068 0.932 51 H 0.053 0.947 52 H 0.068 0.932 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.618 -11.430 -22.388 28.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.014 4.014 3 O -0.312 6.312 4 C 0.050 3.950 5 H 0.071 0.929 6 C -0.172 4.172 7 C 0.303 3.697 8 O -0.454 6.454 9 N -0.350 5.350 10 C -0.045 4.045 11 C -0.043 4.043 12 O -0.284 6.284 13 C 0.045 3.955 14 C 0.041 3.959 15 N -0.357 5.357 16 C -0.369 4.369 17 H 0.096 0.904 18 C -0.256 4.256 19 N -0.595 5.595 20 Si 0.809 3.191 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.193 1.193 24 C -0.021 4.021 25 C -0.014 4.014 26 C -0.130 4.130 27 C -0.201 4.201 28 C -0.205 4.205 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.135 0.865 35 H 0.158 0.842 36 H 0.150 0.850 37 H 0.114 0.886 38 H 0.063 0.937 39 H 0.150 0.850 40 H 0.056 0.944 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.088 0.912 48 H 0.081 0.919 49 H 0.064 0.936 50 H 0.087 0.913 51 H 0.072 0.928 52 H 0.087 0.913 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.069 -11.411 -21.878 27.923 hybrid contribution -1.148 0.055 0.902 1.461 sum 11.921 -11.356 -20.977 26.666 Atomic orbital electron populations 1.21725 0.93863 1.02899 1.02004 1.22448 0.95610 0.83608 0.99698 1.87876 1.21823 1.27086 1.94458 1.21925 0.81328 0.96361 0.95426 0.92903 1.22043 1.04659 1.00483 0.89994 1.21294 0.78460 0.81417 0.88568 1.90671 1.43202 1.35108 1.76454 1.48354 1.57356 1.17159 1.12099 1.22673 0.95684 0.83031 1.03074 1.23275 0.98882 1.00177 0.81932 1.88000 1.73136 1.41206 1.26106 1.23076 0.89599 0.85889 0.96920 1.22223 0.85727 0.96011 0.91892 1.46058 1.26754 1.51895 1.10994 1.19348 0.98753 1.19147 0.99605 0.90369 1.25645 1.00633 1.02084 0.97278 1.70009 1.28975 1.49521 1.11019 0.85022 0.78353 0.77613 0.78077 1.21366 1.21607 1.19305 1.23102 0.93617 0.94975 0.90378 1.21871 0.99284 0.96696 0.83588 1.21568 0.96774 0.99995 0.94686 1.21810 1.01076 0.97317 0.99935 1.21894 0.93144 1.02614 1.02863 0.94153 0.91733 0.89476 0.92119 0.94633 0.86548 0.84213 0.85006 0.88614 0.93682 0.85004 0.94415 0.92263 0.94065 0.93658 0.94172 0.89772 0.89930 0.91199 0.91930 0.93590 0.91285 0.92752 0.91256 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 10.28 71.98 0.74 -2.30 16 2 C 0.06 1.36 6.50 71.98 0.47 1.83 16 3 O -0.39 -9.66 8.65 -135.19 -1.17 -10.83 16 4 C 0.11 2.02 1.42 30.59 0.04 2.06 16 5 H 0.05 1.12 7.55 -2.39 -0.02 1.10 16 6 C -0.13 -2.22 3.00 29.85 0.09 -2.13 16 7 C 0.51 13.72 7.60 87.66 0.67 14.39 16 8 O -0.58 -20.47 14.91 10.76 0.16 -20.30 16 9 N -0.62 -16.18 3.03 -817.70 -2.48 -18.66 16 10 C 0.08 1.41 6.51 86.32 0.56 1.97 16 11 C 0.03 0.86 6.88 72.06 0.50 1.35 16 12 O -0.37 -14.20 10.52 -148.98 -1.57 -15.77 16 13 C 0.09 3.53 1.21 -10.51 -0.01 3.52 16 14 C 0.17 8.50 7.10 86.30 0.61 9.11 16 15 N -0.63 -35.03 3.70 -729.20 -2.69 -37.72 16 16 C -0.24 -14.39 10.69 84.03 0.90 -13.49 16 17 H 0.08 4.52 7.84 -2.91 -0.02 4.50 16 18 C -0.06 -3.74 5.49 84.86 0.47 -3.28 16 19 N -0.95 -59.00 11.31 21.65 0.24 -58.75 16 20 Si 0.98 47.43 29.56 68.60 2.03 49.46 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 22 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 24 C 0.10 4.77 8.08 86.31 0.70 5.47 16 25 C 0.11 3.67 5.77 86.17 0.50 4.16 16 26 C -0.11 -1.41 2.88 -10.79 -0.03 -1.44 16 27 C -0.14 -1.70 8.45 71.98 0.61 -1.10 16 28 C -0.15 -1.27 8.95 71.98 0.64 -0.63 16 29 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.03 7.74 -2.39 -0.02 1.01 16 33 H 0.04 0.86 7.98 -2.39 -0.02 0.84 16 34 H 0.12 1.70 6.35 -2.39 -0.02 1.68 16 35 H 0.14 1.33 6.19 -2.39 -0.01 1.31 16 36 H 0.13 1.28 6.04 -2.39 -0.01 1.27 16 37 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.04 1.22 7.19 -2.38 -0.02 1.20 16 39 H 0.13 2.49 8.14 -2.38 -0.02 2.47 16 40 H 0.04 1.90 8.09 -2.38 -0.02 1.88 16 41 H 0.06 3.39 6.89 -2.39 -0.02 3.37 16 42 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 43 H 0.05 2.01 7.27 -2.39 -0.02 1.99 16 44 H 0.04 1.84 7.94 -2.39 -0.02 1.83 16 45 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 46 H 0.08 3.07 6.91 -2.39 -0.02 3.05 16 47 H 0.07 0.93 7.73 -2.39 -0.02 0.92 16 48 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 49 H 0.04 0.73 7.66 -2.39 -0.02 0.71 16 50 H 0.07 0.63 6.85 -2.39 -0.02 0.61 16 51 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 52 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 53 H 0.07 0.45 6.46 -2.39 -0.02 0.43 16 Total: -1.00 -80.01 408.08 2.85 -77.16 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.88 Total: 15.92 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 7.45 Total: 19.50 kcal Atomic # 7 Polarization: -110.20 SS G_CDS: -4.93 Total: -115.13 kcal Atomic # 8 Polarization: -44.33 SS G_CDS: -2.58 Total: -46.91 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -80.01 2.85 -77.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755052236.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.910 kcal (2) G-P(sol) polarization free energy of solvation -80.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds