Wall clock time and date at job start Sat Apr 11 2020 06:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42895 * 109.46859 * 2 1 4 4 C 1.42908 * 114.00017 * 175.72484 * 3 2 1 5 5 H 1.08992 * 109.46861 * 30.60139 * 4 3 2 6 6 C 1.52997 * 109.47218 * 150.60331 * 4 3 2 7 7 C 1.50704 * 109.47231 * 295.00109 * 6 4 3 8 8 O 1.21286 * 119.99772 * 359.97438 * 7 6 4 9 9 N 1.34770 * 120.00103 * 180.02562 * 7 6 4 10 10 C 1.46500 * 119.99997 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.77595 * 31.45903 * 10 9 7 12 12 C 1.55053 * 110.87362 * 267.70128 * 10 9 7 13 13 O 1.44567 * 103.64534 * 205.24949 * 12 10 9 14 14 C 1.42969 * 106.77763 * 39.22755 * 13 12 10 15 15 C 1.53212 * 115.36135 * 203.79814 * 14 13 12 16 16 N 1.47727 * 85.89820 * 220.05736 * 15 14 13 17 17 C 1.36935 * 134.43312 * 204.09841 * 16 15 14 18 18 H 1.08000 * 119.99710 * 180.02562 * 17 16 15 19 19 C 1.38813 * 119.99970 * 0.02562 * 17 16 15 20 20 N 1.31613 * 120.00050 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99698 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47146 * 60.00438 * 21 19 17 23 23 H 1.48505 * 109.47051 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47527 * 300.00125 * 21 19 17 25 25 C 1.47721 * 91.12914 * 24.11533 * 16 15 14 26 26 C 1.53443 * 108.16801 * 334.19415 * 14 13 12 27 27 C 1.53005 * 109.46958 * 270.60135 * 4 3 2 28 28 C 1.53001 * 109.46611 * 174.61783 * 27 4 3 29 29 C 1.52995 * 109.47202 * 294.61821 * 27 4 3 30 30 H 1.09000 * 109.47589 * 300.00141 * 1 2 3 31 31 H 1.08996 * 109.47201 * 60.00028 * 1 2 3 32 32 H 1.09004 * 109.46889 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47066 * 239.99802 * 2 1 3 34 34 H 1.09000 * 109.46850 * 119.99315 * 2 1 3 35 35 H 1.08999 * 109.47529 * 175.00176 * 6 4 3 36 36 H 1.08999 * 109.47154 * 54.99666 * 6 4 3 37 37 H 0.96995 * 120.00232 * 359.97438 * 9 7 6 38 38 H 1.09005 * 110.59277 * 86.70609 * 12 10 9 39 39 H 1.09006 * 110.59037 * 323.79077 * 12 10 9 40 40 H 1.09002 * 113.80500 * 334.29393 * 15 14 13 41 41 H 1.09000 * 113.80957 * 105.81106 * 15 14 13 42 42 H 0.97005 * 120.00136 * 180.02562 * 20 19 17 43 43 H 1.09005 * 113.80160 * 221.63456 * 25 16 15 44 44 H 1.09002 * 113.90958 * 90.14979 * 25 16 15 45 45 H 1.08999 * 110.55118 * 120.25958 * 26 14 13 46 46 H 1.09005 * 110.54627 * 242.93493 * 26 14 13 47 47 H 1.08999 * 109.46877 * 54.62115 * 27 4 3 48 48 H 1.08999 * 109.47229 * 60.00548 * 28 27 4 49 49 H 1.09003 * 109.46439 * 179.97438 * 28 27 4 50 50 H 1.08995 * 109.47049 * 299.99923 * 28 27 4 51 51 H 1.09004 * 109.47008 * 173.97964 * 29 27 4 52 52 H 1.08997 * 109.47429 * 293.98306 * 29 27 4 53 53 H 1.09009 * 109.47177 * 53.98094 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4274 1.4614 0.0973 5 1 3.8944 0.5960 -0.3728 6 6 3.8864 2.7368 -0.6121 7 6 3.5956 2.6240 -2.0865 8 8 3.0730 1.6219 -2.5266 9 7 3.9170 3.6363 -2.9162 10 6 3.6337 3.5269 -4.3493 11 1 2.7430 2.9229 -4.5224 12 6 4.8545 2.9495 -5.1113 13 8 4.6886 3.4562 -6.4550 14 6 4.2145 4.7996 -6.3339 15 6 3.4448 5.3356 -7.5454 16 7 4.1632 6.6041 -7.3069 17 6 3.9166 7.9169 -7.6087 18 1 4.6218 8.6802 -7.3145 19 6 2.7604 8.2664 -8.2926 20 7 1.9009 7.3362 -8.6506 21 14 2.4237 10.0573 -8.7036 22 1 3.5187 10.5834 -9.5577 23 1 1.1333 10.1642 -9.4307 24 1 2.3513 10.8480 -7.4488 25 6 5.2543 5.8897 -6.6131 26 6 3.4832 4.9296 -4.9912 27 6 3.8344 1.5228 1.5710 28 6 5.3605 1.5097 1.6795 29 6 3.2896 2.8080 2.1973 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5137 0.8901 35 1 4.9578 2.8705 -0.4624 36 1 3.3524 3.5935 -0.2010 37 1 4.3352 4.4376 -2.5643 38 1 4.8289 1.8597 -5.1066 39 1 5.7852 3.3138 -4.6763 40 1 3.7095 4.8501 -8.4847 41 1 2.3683 5.4033 -7.3880 42 1 1.0930 7.5805 -9.1289 43 1 5.6119 6.3967 -5.7168 44 1 6.0616 5.5695 -7.2718 45 1 3.9579 5.6881 -4.3688 46 1 2.4317 5.1693 -5.1499 47 1 3.4253 0.6604 2.0971 48 1 5.7696 2.3722 1.1533 49 1 5.6504 1.5540 2.7293 50 1 5.7486 0.5942 1.2332 51 1 3.4866 2.8015 3.2694 52 1 3.7790 3.6695 1.7431 53 1 2.2148 2.8685 2.0258 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755061285.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:45 Heat of formation + Delta-G solvation = -104.546089 kcal Electronic energy + Delta-G solvation = -30787.241465 eV Core-core repulsion = 26659.745748 eV Total energy + Delta-G solvation = -4127.495717 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.64919 -40.75389 -39.28441 -37.83273 -36.23789 -35.63127 -34.12788 -32.42144 -31.80699 -30.46388 -29.61899 -27.97643 -27.35152 -26.76753 -25.49114 -23.93191 -23.70853 -22.77217 -21.67999 -20.42984 -20.27953 -18.78751 -18.52550 -17.83771 -17.47942 -17.17800 -16.61727 -16.45086 -16.30522 -16.05184 -16.01141 -15.62540 -14.98358 -14.82719 -14.76068 -14.50971 -14.45535 -14.05439 -14.00498 -13.88960 -13.64909 -13.30247 -13.10022 -12.97345 -12.83943 -12.80762 -12.69818 -12.61766 -12.46548 -12.38207 -12.24219 -12.06312 -11.96182 -11.84762 -11.79555 -11.68967 -11.60677 -11.36969 -10.90383 -10.81332 -10.50406 -10.28004 -10.02817 -8.98746 -7.92095 -5.27295 1.46377 1.50206 1.56427 1.69307 2.08842 2.44555 2.81353 2.93532 3.24158 3.40585 3.52735 3.61926 3.68361 3.71331 3.80729 4.03358 4.12278 4.13344 4.17773 4.24168 4.33203 4.38709 4.46964 4.52835 4.58183 4.62832 4.67091 4.71631 4.73848 4.81131 4.87360 4.89894 4.92250 4.95315 4.96610 4.99914 5.07148 5.10264 5.12026 5.13855 5.21514 5.25895 5.28394 5.46368 5.48681 5.49686 5.51224 5.86142 6.07362 6.39810 6.58876 6.87543 7.30834 7.57622 8.51406 9.25267 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016042 B = 0.002196 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.025609 B =12747.456380 C =12836.470562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 O -0.392 6.392 4 C 0.108 3.892 5 H 0.054 0.946 6 C -0.136 4.136 7 C 0.512 3.488 8 O -0.574 6.574 9 N -0.708 5.708 10 C 0.125 3.875 11 H 0.082 0.918 12 C 0.042 3.958 13 O -0.380 6.380 14 C 0.074 3.926 15 C 0.167 3.833 16 N -0.629 5.629 17 C -0.234 4.234 18 H 0.091 0.909 19 C -0.068 4.068 20 N -0.955 5.955 21 Si 0.983 3.017 22 H -0.278 1.278 23 H -0.297 1.297 24 H -0.271 1.271 25 C 0.112 3.888 26 C -0.109 4.109 27 C -0.112 4.112 28 C -0.149 4.149 29 C -0.144 4.144 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.034 0.966 34 H 0.058 0.942 35 H 0.140 0.860 36 H 0.117 0.883 37 H 0.418 0.582 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.010 0.990 41 H 0.051 0.949 42 H 0.249 0.751 43 H 0.074 0.926 44 H 0.042 0.958 45 H 0.102 0.898 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.066 0.934 50 H 0.054 0.946 51 H 0.060 0.940 52 H 0.067 0.933 53 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.481 -12.569 25.833 29.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.015 4.015 3 O -0.312 6.312 4 C 0.049 3.951 5 H 0.072 0.928 6 C -0.175 4.175 7 C 0.301 3.699 8 O -0.453 6.453 9 N -0.362 5.362 10 C 0.018 3.982 11 H 0.100 0.900 12 C -0.036 4.036 13 O -0.297 6.297 14 C 0.033 3.967 15 C 0.042 3.958 16 N -0.357 5.357 17 C -0.361 4.361 18 H 0.109 0.891 19 C -0.261 4.261 20 N -0.604 5.604 21 Si 0.810 3.190 22 H -0.204 1.204 23 H -0.223 1.223 24 H -0.196 1.196 25 C -0.013 4.013 26 C -0.147 4.147 27 C -0.131 4.131 28 C -0.206 4.206 29 C -0.202 4.202 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.104 0.896 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.157 0.843 36 H 0.135 0.865 37 H 0.256 0.744 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.028 0.972 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.092 0.908 44 H 0.060 0.940 45 H 0.120 0.880 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.089 0.911 49 H 0.085 0.915 50 H 0.073 0.927 51 H 0.079 0.921 52 H 0.086 0.914 53 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.865 -12.981 25.190 28.939 hybrid contribution -0.325 0.933 -0.885 1.327 sum 5.539 -12.048 24.306 27.688 Atomic orbital electron populations 1.21723 0.93533 1.02957 1.02208 1.22452 0.95790 0.83655 0.99642 1.87867 1.21665 1.26991 1.94660 1.21895 0.81523 0.96847 0.94804 0.92755 1.22021 1.05648 1.00874 0.88957 1.21252 0.76696 0.82223 0.89749 1.90696 1.43828 1.31916 1.78816 1.45814 1.63315 1.20880 1.06153 1.22278 0.98572 0.96078 0.81240 0.89993 1.24014 0.97754 0.99858 0.81964 1.88823 1.86351 1.27383 1.27151 1.23734 0.95092 0.81473 0.96358 1.22197 0.96611 0.83975 0.93062 1.45995 1.21612 1.01441 1.66656 1.19375 1.03934 0.82263 1.30563 0.89107 1.25702 0.97270 1.02063 1.01028 1.70017 1.12224 1.33245 1.44884 0.85092 0.76648 0.79111 0.78109 1.20372 1.22308 1.19634 1.23111 0.91709 0.90450 0.96035 1.22544 1.01397 0.96695 0.94044 1.21565 0.97329 0.99696 0.94481 1.21896 0.93269 1.02558 1.02858 1.21810 1.00896 0.96819 1.00626 0.91668 0.93689 0.89592 0.94744 0.92357 0.84259 0.86459 0.74449 0.88737 0.89776 0.97245 0.93107 0.94186 0.90768 0.94031 0.87987 0.91333 0.91272 0.91086 0.91456 0.92654 0.92122 0.91377 0.93433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 10.28 71.98 0.74 -1.84 16 2 C 0.06 1.20 6.44 71.98 0.46 1.66 16 3 O -0.39 -8.71 8.68 -135.21 -1.17 -9.88 16 4 C 0.11 1.80 1.42 30.59 0.04 1.84 16 5 H 0.05 1.04 7.64 -2.39 -0.02 1.02 16 6 C -0.14 -1.90 4.62 29.85 0.14 -1.77 16 7 C 0.51 11.42 7.71 87.66 0.68 12.10 16 8 O -0.57 -17.99 15.06 10.72 0.16 -17.83 16 9 N -0.71 -14.24 5.19 -436.00 -2.26 -16.51 16 10 C 0.12 3.43 3.51 46.38 0.16 3.60 16 11 H 0.08 2.69 7.54 -2.39 -0.02 2.67 16 12 C 0.04 1.15 7.42 72.69 0.54 1.69 16 13 O -0.38 -14.00 11.29 -148.98 -1.68 -15.68 16 14 C 0.07 2.90 1.56 -10.46 -0.02 2.88 16 15 C 0.17 8.49 7.00 86.21 0.60 9.10 16 16 N -0.63 -32.55 3.68 -733.80 -2.70 -35.25 16 17 C -0.23 -12.99 10.70 84.03 0.90 -12.09 16 18 H 0.09 4.72 7.83 -2.91 -0.02 4.70 16 19 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 20 N -0.96 -58.43 11.39 21.65 0.25 -58.18 16 21 Si 0.98 45.44 29.55 68.60 2.03 47.47 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 C 0.11 4.53 8.43 86.22 0.73 5.26 16 26 C -0.11 -3.49 6.20 31.42 0.19 -3.29 16 27 C -0.11 -1.30 2.89 -10.79 -0.03 -1.33 16 28 C -0.15 -1.19 8.96 71.98 0.65 -0.54 16 29 C -0.14 -1.58 8.45 71.98 0.61 -0.98 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.06 0.90 7.67 -2.39 -0.02 0.88 16 35 H 0.14 1.02 6.36 -2.39 -0.02 1.01 16 36 H 0.12 1.41 6.79 -2.39 -0.02 1.40 16 37 H 0.42 5.65 8.41 -92.71 -0.78 4.87 16 38 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 39 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.05 2.84 6.89 -2.39 -0.02 2.82 16 42 H 0.25 14.85 8.31 -92.70 -0.77 14.08 16 43 H 0.07 2.56 7.85 -2.38 -0.02 2.54 16 44 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.10 2.81 7.37 -2.39 -0.02 2.79 16 46 H 0.07 2.53 7.75 -2.38 -0.02 2.51 16 47 H 0.07 0.86 7.68 -2.39 -0.02 0.84 16 48 H 0.07 0.41 6.47 -2.39 -0.02 0.40 16 49 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 50 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 51 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 52 H 0.07 0.59 6.83 -2.39 -0.02 0.57 16 53 H 0.05 0.69 7.68 -2.38 -0.02 0.67 16 Total: -1.00 -74.95 415.89 1.59 -73.36 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.11 Total: 19.59 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 6.86 Total: 12.89 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -4.72 Total: -109.93 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -2.69 Total: -43.39 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -74.95 1.59 -73.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755061285.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.181 kcal (2) G-P(sol) polarization free energy of solvation -74.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds