Wall clock time and date at job start Sat Apr 11 2020 06:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42908 * 109.47114 * 2 1 4 4 C 1.42895 * 114.00076 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47337 * 330.00223 * 4 3 2 6 6 C 1.53006 * 109.46856 * 90.00212 * 4 3 2 7 7 C 1.50697 * 109.47138 * 209.99864 * 4 3 2 8 8 O 1.21279 * 120.00062 * 348.00991 * 7 4 3 9 9 N 1.34779 * 120.00048 * 168.01215 * 7 4 3 10 10 C 1.46924 * 120.58790 * 4.41824 * 9 7 4 11 11 C 1.52858 * 108.94875 * 234.16008 * 10 9 7 12 12 C 1.52431 * 109.48915 * 306.50132 * 11 10 9 13 13 C 1.53598 * 110.43751 * 296.87890 * 12 11 10 14 14 O 1.43884 * 107.11623 * 239.50385 * 13 12 11 15 15 C 1.44433 * 106.99856 * 26.36952 * 14 13 12 16 16 H 1.08992 * 110.60745 * 78.92690 * 15 14 13 17 17 C 1.52997 * 110.60609 * 201.74014 * 15 14 13 18 18 N 1.46497 * 109.47291 * 298.54406 * 17 15 14 19 19 C 1.36938 * 120.00352 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99803 * 0.02562 * 19 18 17 21 21 C 1.38806 * 120.00149 * 179.97438 * 19 18 17 22 22 N 1.31623 * 119.99869 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00103 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47014 * 90.00230 * 23 21 19 25 25 H 1.48502 * 109.47148 * 209.99800 * 23 21 19 26 26 H 1.48495 * 109.47199 * 330.00328 * 23 21 19 27 27 C 1.54317 * 110.03862 * 181.80563 * 12 11 10 28 28 C 1.52425 * 110.98126 * 59.73674 * 12 11 10 29 29 C 1.46938 * 120.58745 * 184.69135 * 9 7 4 30 30 H 1.09007 * 109.47184 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47929 * 60.00162 * 1 2 3 32 32 H 1.09002 * 109.47071 * 299.99772 * 1 2 3 33 33 H 1.08997 * 109.47444 * 119.99631 * 2 1 3 34 34 H 1.08995 * 109.47396 * 239.99959 * 2 1 3 35 35 H 1.08995 * 109.47143 * 54.26014 * 6 4 3 36 36 H 1.09004 * 109.46828 * 174.26185 * 6 4 3 37 37 H 1.09000 * 109.47158 * 294.25629 * 6 4 3 38 38 H 1.09004 * 109.59820 * 353.97100 * 10 9 7 39 39 H 1.08997 * 109.60065 * 114.43825 * 10 9 7 40 40 H 1.08998 * 109.54979 * 186.42976 * 11 10 9 41 41 H 1.09003 * 109.33904 * 66.44244 * 11 10 9 42 42 H 1.08995 * 109.91319 * 358.87925 * 13 12 11 43 43 H 1.09008 * 109.90629 * 119.95416 * 13 12 11 44 44 H 1.09003 * 109.46982 * 58.54490 * 17 15 14 45 45 H 1.09004 * 109.46897 * 178.54479 * 17 15 14 46 46 H 0.96996 * 119.99898 * 0.02562 * 18 17 15 47 47 H 0.96997 * 120.00106 * 180.02562 * 22 21 19 48 48 H 1.09001 * 110.93063 * 216.21097 * 27 12 11 49 49 H 1.09000 * 110.92804 * 339.86711 * 27 12 11 50 50 H 1.08993 * 109.47228 * 180.16574 * 28 12 11 51 51 H 1.09001 * 109.48301 * 60.14341 * 28 12 11 52 52 H 1.09000 * 109.59369 * 245.57678 * 29 9 7 53 53 H 1.08998 * 109.59245 * 6.02988 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8635 0.6017 0.5129 6 6 3.9385 1.5007 -1.4434 7 6 3.8347 2.7264 0.7098 8 8 2.9995 3.5638 0.9784 9 7 5.1240 2.9282 1.0466 10 6 6.1611 1.9689 0.6431 11 6 6.9328 1.5209 1.8842 12 6 7.4455 2.7452 2.6337 13 6 8.4392 3.5294 1.7638 14 8 9.6880 3.5679 2.4773 15 6 9.7198 2.4068 3.3357 16 1 9.9858 1.5161 2.7665 17 6 10.7001 2.6181 4.4912 18 7 12.0499 2.8146 3.9568 19 6 13.1005 3.0234 4.8100 20 1 12.9340 3.0428 5.8769 21 6 14.3795 3.2090 4.3036 22 7 15.3893 3.4092 5.1237 23 14 14.6678 3.1734 2.4583 24 1 14.5193 4.5445 1.9075 25 1 16.0387 2.6743 2.1810 26 1 13.6746 2.2731 1.8194 27 6 8.2654 2.3063 3.8651 28 6 6.2921 3.6429 3.0664 29 6 5.5164 4.1084 1.8290 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5138 -0.8899 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 3.4290 2.2972 -1.9856 36 1 5.0122 1.6889 -1.4455 37 1 3.7362 0.5450 -1.9267 38 1 5.6952 1.1034 0.1719 39 1 6.8465 2.4449 -0.0581 40 1 7.7760 0.8987 1.5845 41 1 6.2708 0.9480 2.5336 42 1 8.5737 3.0248 0.8071 43 1 8.0706 4.5422 1.6004 44 1 10.4039 3.4978 5.0627 45 1 10.6903 1.7427 5.1406 46 1 12.1995 2.7968 2.9986 47 1 16.2830 3.5394 4.7699 48 1 8.1074 2.9877 4.7012 49 1 8.0241 1.2819 4.1486 50 1 6.6857 4.5102 3.5962 51 1 5.6255 3.0861 3.7251 52 1 6.1503 4.7550 1.2222 53 1 4.6253 4.6537 2.1399 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755464830.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:29 Heat of formation + Delta-G solvation = -110.888066 kcal Electronic energy + Delta-G solvation = -30957.019824 eV Core-core repulsion = 26829.249098 eV Total energy + Delta-G solvation = -4127.770726 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -41.24922 -39.91638 -38.25008 -36.97577 -34.72676 -33.89976 -32.86638 -31.74229 -31.61154 -30.46002 -29.91994 -27.51848 -25.56454 -25.22219 -23.88413 -23.55312 -22.99150 -21.89845 -20.91410 -20.44313 -18.73326 -17.82371 -17.56242 -17.25130 -16.40829 -16.26309 -16.04230 -15.67693 -15.30302 -15.25560 -14.71427 -14.62678 -14.19649 -14.17532 -13.89957 -13.62031 -13.43725 -13.33208 -13.11863 -12.84527 -12.83723 -12.67409 -12.62339 -12.43091 -12.20629 -11.96973 -11.87606 -11.77456 -11.61806 -11.54504 -11.47197 -11.25116 -10.84470 -10.69690 -10.54905 -10.35527 -10.30369 -10.11627 -9.80132 -9.55406 -9.45228 -9.00121 -8.87135 -7.18719 -5.73321 -3.08058 2.21204 2.31918 3.29411 3.41850 3.47060 3.48986 3.92070 3.97524 4.18958 4.23168 4.31311 4.44090 4.49266 4.60917 4.62591 4.64013 4.73587 4.79213 4.82680 4.86744 4.88283 4.95612 5.05006 5.11695 5.15135 5.18428 5.24878 5.27983 5.33409 5.43220 5.44088 5.54224 5.55887 5.59275 5.64207 5.65636 5.68444 5.72341 5.77940 5.85320 5.94535 5.96602 6.06412 6.15090 6.46963 6.60402 6.65287 6.97874 7.14743 7.80644 8.02539 8.45684 9.25719 9.98220 10.18814 11.45053 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026677 B = 0.002064 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.345848 B =13560.015320 C =13731.081036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.072 3.928 5 H 0.085 0.915 6 C -0.176 4.176 7 C 0.518 3.482 8 O -0.520 6.520 9 N -0.608 5.608 10 C 0.098 3.902 11 C -0.123 4.123 12 C -0.092 4.092 13 C 0.052 3.948 14 O -0.359 6.359 15 C 0.069 3.931 16 H 0.067 0.933 17 C 0.164 3.836 18 N -0.752 5.752 19 C -0.244 4.244 20 H 0.089 0.911 21 C 0.004 3.996 22 N -0.935 5.935 23 Si 0.887 3.113 24 H -0.283 1.283 25 H -0.292 1.292 26 H -0.278 1.278 27 C -0.136 4.136 28 C -0.118 4.118 29 C 0.110 3.890 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.082 0.918 44 H 0.033 0.967 45 H 0.039 0.961 46 H 0.365 0.635 47 H 0.259 0.741 48 H 0.083 0.917 49 H 0.080 0.920 50 H 0.084 0.916 51 H 0.070 0.930 52 H 0.072 0.928 53 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.839 -8.546 -12.835 32.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.277 6.277 4 C 0.011 3.989 5 H 0.102 0.898 6 C -0.234 4.234 7 C 0.305 3.695 8 O -0.394 6.394 9 N -0.344 5.344 10 C -0.025 4.025 11 C -0.161 4.161 12 C -0.093 4.093 13 C -0.025 4.025 14 O -0.278 6.278 15 C 0.011 3.989 16 H 0.085 0.915 17 C 0.037 3.963 18 N -0.397 5.397 19 C -0.373 4.373 20 H 0.107 0.893 21 C -0.192 4.192 22 N -0.583 5.583 23 Si 0.717 3.283 24 H -0.210 1.210 25 H -0.219 1.219 26 H -0.204 1.204 27 C -0.175 4.175 28 C -0.156 4.156 29 C -0.012 4.012 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.100 0.900 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.198 0.802 47 H 0.069 0.931 48 H 0.102 0.898 49 H 0.099 0.901 50 H 0.103 0.897 51 H 0.089 0.911 52 H 0.090 0.910 53 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -29.144 -7.737 -12.499 32.642 hybrid contribution 0.483 -0.505 -1.295 1.472 sum -28.662 -8.242 -13.795 32.859 Atomic orbital electron populations 1.21729 0.93285 1.02324 1.03476 1.22610 0.96095 0.83395 1.00146 1.88065 1.18216 1.26448 1.94950 1.21868 0.83837 0.96415 0.96816 0.89766 1.22361 1.02169 1.03931 0.94949 1.20364 0.81919 0.88140 0.79123 1.90716 1.49969 1.45195 1.53532 1.48038 1.06438 1.25062 1.54880 1.21933 0.90484 0.92743 0.97300 1.21867 1.00303 0.97231 0.96676 1.21501 0.95922 0.95633 0.96199 1.23264 0.84323 1.00302 0.94591 1.89074 1.36023 1.44969 1.57758 1.23496 0.94641 0.88724 0.92038 0.91486 1.20696 0.84270 0.98930 0.92396 1.42592 1.03233 1.88597 1.05302 1.19062 0.85879 1.41221 0.91170 0.89273 1.24659 0.95530 1.01838 0.97164 1.69709 0.99433 1.56040 1.33147 0.86499 0.76789 0.77985 0.86979 1.21007 1.21867 1.20393 1.23186 0.94422 1.02494 0.97356 1.21881 0.96323 1.00118 0.97271 1.21726 1.00338 0.86951 0.92174 0.90916 0.91693 0.91636 0.93199 0.93116 0.90773 0.90510 0.91077 0.89380 0.90466 0.89901 0.90927 0.92702 0.90030 0.94865 0.94372 0.80228 0.93116 0.89840 0.90144 0.89732 0.91095 0.90979 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.15 0.38 -0.47 16 2 C 0.05 0.35 6.47 37.15 0.24 0.59 16 3 O -0.36 -3.56 9.55 -54.85 -0.52 -4.08 16 4 C 0.07 0.57 2.28 -27.88 -0.06 0.51 16 5 H 0.08 0.48 6.90 -51.93 -0.36 0.12 16 6 C -0.18 -1.03 9.09 37.16 0.34 -0.69 16 7 C 0.52 5.53 7.05 -10.99 -0.08 5.45 16 8 O -0.52 -7.81 15.97 -14.06 -0.22 -8.03 16 9 N -0.61 -5.20 2.97 -172.91 -0.51 -5.71 16 10 C 0.10 0.60 4.86 -3.88 -0.02 0.58 16 11 C -0.12 -0.85 4.57 -27.10 -0.12 -0.98 16 12 C -0.09 -0.84 0.61 -154.09 -0.09 -0.93 16 13 C 0.05 0.59 6.16 37.47 0.23 0.82 16 14 O -0.36 -5.90 11.10 -35.23 -0.39 -6.29 16 15 C 0.07 1.03 3.42 -25.62 -0.09 0.95 16 16 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 17 C 0.16 3.19 6.02 -4.04 -0.02 3.17 16 18 N -0.75 -18.51 5.34 -59.91 -0.32 -18.83 16 19 C -0.24 -7.07 10.47 -15.06 -0.16 -7.23 16 20 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 21 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 22 N -0.94 -29.81 13.97 55.49 0.78 -29.04 16 23 Si 0.89 22.79 27.73 -169.99 -4.71 18.07 16 24 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 26 H -0.28 -6.74 6.52 56.52 0.37 -6.37 16 27 C -0.14 -1.49 5.67 -24.93 -0.14 -1.63 16 28 C -0.12 -1.01 4.62 -26.88 -0.12 -1.14 16 29 C 0.11 0.97 6.12 -3.66 -0.02 0.95 16 30 H 0.07 0.27 8.14 -51.92 -0.42 -0.16 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.27 8.09 -51.93 -0.42 -0.15 16 34 H 0.05 0.24 8.01 -51.93 -0.42 -0.17 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.35 5.93 -51.93 -0.31 0.05 16 37 H 0.07 0.30 8.01 -51.93 -0.42 -0.11 16 38 H 0.09 0.37 4.71 -51.93 -0.24 0.13 16 39 H 0.08 0.45 6.90 -51.93 -0.36 0.09 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.05 0.55 6.61 -51.93 -0.34 0.21 16 43 H 0.08 0.86 6.44 -51.92 -0.33 0.53 16 44 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.36 8.95 5.48 -40.82 -0.22 8.72 16 47 H 0.26 7.84 8.31 -40.82 -0.34 7.51 16 48 H 0.08 0.94 7.75 -51.93 -0.40 0.53 16 49 H 0.08 0.75 7.83 -51.93 -0.41 0.34 16 50 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 51 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 52 H 0.07 0.60 6.80 -51.93 -0.35 0.24 16 53 H 0.09 0.97 7.02 -51.93 -0.36 0.61 16 LS Contribution 402.97 15.07 6.07 6.07 Total: -1.00 -36.70 402.97 -8.87 -45.57 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -9.19 Total: 2.31 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 0.16 Total: -0.04 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.06 Total: -53.58 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -1.14 Total: -18.40 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.71 Total: 18.07 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.70 -8.87 -45.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755464830.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.319 kcal (2) G-P(sol) polarization free energy of solvation -36.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds