Wall clock time and date at job start Sat Apr 11 2020 06:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42908 * 109.47114 * 2 1 4 4 C 1.42895 * 114.00076 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47337 * 330.00223 * 4 3 2 6 6 C 1.53006 * 109.46856 * 90.00212 * 4 3 2 7 7 C 1.50697 * 109.47138 * 209.99864 * 4 3 2 8 8 O 1.21279 * 120.00062 * 348.00991 * 7 4 3 9 9 N 1.34779 * 120.00048 * 168.01215 * 7 4 3 10 10 C 1.46924 * 120.58790 * 4.41824 * 9 7 4 11 11 C 1.52858 * 108.94875 * 234.16008 * 10 9 7 12 12 C 1.52431 * 109.48915 * 306.50132 * 11 10 9 13 13 C 1.53598 * 110.43751 * 296.87890 * 12 11 10 14 14 O 1.43884 * 107.11623 * 239.50385 * 13 12 11 15 15 C 1.44433 * 106.99856 * 26.36952 * 14 13 12 16 16 H 1.08992 * 110.60745 * 78.92690 * 15 14 13 17 17 C 1.52997 * 110.60609 * 201.74014 * 15 14 13 18 18 N 1.46497 * 109.47291 * 298.54406 * 17 15 14 19 19 C 1.36938 * 120.00352 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99803 * 0.02562 * 19 18 17 21 21 C 1.38806 * 120.00149 * 179.97438 * 19 18 17 22 22 N 1.31623 * 119.99869 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00103 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47014 * 90.00230 * 23 21 19 25 25 H 1.48502 * 109.47148 * 209.99800 * 23 21 19 26 26 H 1.48495 * 109.47199 * 330.00328 * 23 21 19 27 27 C 1.54317 * 110.03862 * 181.80563 * 12 11 10 28 28 C 1.52425 * 110.98126 * 59.73674 * 12 11 10 29 29 C 1.46938 * 120.58745 * 184.69135 * 9 7 4 30 30 H 1.09007 * 109.47184 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47929 * 60.00162 * 1 2 3 32 32 H 1.09002 * 109.47071 * 299.99772 * 1 2 3 33 33 H 1.08997 * 109.47444 * 119.99631 * 2 1 3 34 34 H 1.08995 * 109.47396 * 239.99959 * 2 1 3 35 35 H 1.08995 * 109.47143 * 54.26014 * 6 4 3 36 36 H 1.09004 * 109.46828 * 174.26185 * 6 4 3 37 37 H 1.09000 * 109.47158 * 294.25629 * 6 4 3 38 38 H 1.09004 * 109.59820 * 353.97100 * 10 9 7 39 39 H 1.08997 * 109.60065 * 114.43825 * 10 9 7 40 40 H 1.08998 * 109.54979 * 186.42976 * 11 10 9 41 41 H 1.09003 * 109.33904 * 66.44244 * 11 10 9 42 42 H 1.08995 * 109.91319 * 358.87925 * 13 12 11 43 43 H 1.09008 * 109.90629 * 119.95416 * 13 12 11 44 44 H 1.09003 * 109.46982 * 58.54490 * 17 15 14 45 45 H 1.09004 * 109.46897 * 178.54479 * 17 15 14 46 46 H 0.96996 * 119.99898 * 0.02562 * 18 17 15 47 47 H 0.96997 * 120.00106 * 180.02562 * 22 21 19 48 48 H 1.09001 * 110.93063 * 216.21097 * 27 12 11 49 49 H 1.09000 * 110.92804 * 339.86711 * 27 12 11 50 50 H 1.08993 * 109.47228 * 180.16574 * 28 12 11 51 51 H 1.09001 * 109.48301 * 60.14341 * 28 12 11 52 52 H 1.09000 * 109.59369 * 245.57678 * 29 9 7 53 53 H 1.08998 * 109.59245 * 6.02988 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8635 0.6017 0.5129 6 6 3.9385 1.5007 -1.4434 7 6 3.8347 2.7264 0.7098 8 8 2.9995 3.5638 0.9784 9 7 5.1240 2.9282 1.0466 10 6 6.1611 1.9689 0.6431 11 6 6.9328 1.5209 1.8842 12 6 7.4455 2.7452 2.6337 13 6 8.4392 3.5294 1.7638 14 8 9.6880 3.5679 2.4773 15 6 9.7198 2.4068 3.3357 16 1 9.9858 1.5161 2.7665 17 6 10.7001 2.6181 4.4912 18 7 12.0499 2.8146 3.9568 19 6 13.1005 3.0234 4.8100 20 1 12.9340 3.0428 5.8769 21 6 14.3795 3.2090 4.3036 22 7 15.3893 3.4092 5.1237 23 14 14.6678 3.1734 2.4583 24 1 14.5193 4.5445 1.9075 25 1 16.0387 2.6743 2.1810 26 1 13.6746 2.2731 1.8194 27 6 8.2654 2.3063 3.8651 28 6 6.2921 3.6429 3.0664 29 6 5.5164 4.1084 1.8290 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5138 -0.8899 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 3.4290 2.2972 -1.9856 36 1 5.0122 1.6889 -1.4455 37 1 3.7362 0.5450 -1.9267 38 1 5.6952 1.1034 0.1719 39 1 6.8465 2.4449 -0.0581 40 1 7.7760 0.8987 1.5845 41 1 6.2708 0.9480 2.5336 42 1 8.5737 3.0248 0.8071 43 1 8.0706 4.5422 1.6004 44 1 10.4039 3.4978 5.0627 45 1 10.6903 1.7427 5.1406 46 1 12.1995 2.7968 2.9986 47 1 16.2830 3.5394 4.7699 48 1 8.1074 2.9877 4.7012 49 1 8.0241 1.2819 4.1486 50 1 6.6857 4.5102 3.5962 51 1 5.6255 3.0861 3.7251 52 1 6.1503 4.7550 1.2222 53 1 4.6253 4.6537 2.1399 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755464830.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:27 Heat of formation + Delta-G solvation = -136.445518 kcal Electronic energy + Delta-G solvation = -30958.128078 eV Core-core repulsion = 26829.249098 eV Total energy + Delta-G solvation = -4128.878980 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -42.00390 -40.75891 -38.91183 -37.90475 -36.51405 -34.73758 -33.70579 -33.44425 -32.20221 -31.43407 -30.87369 -28.52088 -26.83888 -25.96278 -24.58745 -24.43834 -23.70259 -23.25658 -22.18015 -21.14945 -19.77943 -19.41034 -18.44169 -17.89693 -17.26755 -17.03564 -16.78652 -16.60300 -16.43305 -16.23998 -15.97877 -15.70267 -15.25379 -14.87290 -14.79102 -14.76216 -14.46348 -14.20111 -14.04768 -13.95377 -13.74347 -13.61197 -13.35839 -13.27024 -13.20063 -13.02879 -12.83984 -12.76720 -12.49804 -12.31854 -12.26372 -12.17496 -12.07323 -12.04251 -11.84914 -11.55267 -11.40404 -11.30378 -11.01481 -10.90444 -10.52647 -10.46630 -9.71319 -9.29850 -8.03209 -5.36048 1.37220 1.42074 1.47263 1.48840 1.69065 2.48719 2.78449 2.92358 3.28468 3.36689 3.40418 3.54367 3.68924 3.77539 3.85634 3.97483 4.03474 4.03846 4.16146 4.18933 4.23042 4.24561 4.31235 4.34148 4.48142 4.48466 4.53673 4.55346 4.60403 4.67017 4.71896 4.78303 4.79588 4.87848 4.90516 4.95181 4.97630 5.01170 5.02368 5.08230 5.18197 5.19010 5.25718 5.27389 5.28857 5.48534 5.73592 6.06877 6.10058 6.21188 6.34652 7.07600 7.07736 7.84427 8.03924 9.18206 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026677 B = 0.002064 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.345848 B =13560.015320 C =13731.081036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.394 6.394 4 C 0.072 3.928 5 H 0.114 0.886 6 C -0.172 4.172 7 C 0.510 3.490 8 O -0.576 6.576 9 N -0.602 5.602 10 C 0.094 3.906 11 C -0.119 4.119 12 C -0.082 4.082 13 C 0.047 3.953 14 O -0.397 6.397 15 C 0.074 3.926 16 H 0.079 0.921 17 C 0.156 3.844 18 N -0.755 5.755 19 C -0.237 4.237 20 H 0.057 0.943 21 C -0.064 4.064 22 N -0.983 5.983 23 Si 0.958 3.042 24 H -0.283 1.283 25 H -0.292 1.292 26 H -0.252 1.252 27 C -0.128 4.128 28 C -0.110 4.110 29 C 0.110 3.890 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.115 0.885 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.021 0.979 45 H 0.047 0.953 46 H 0.367 0.633 47 H 0.258 0.742 48 H 0.075 0.925 49 H 0.103 0.897 50 H 0.078 0.922 51 H 0.072 0.928 52 H 0.078 0.922 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.897 -10.990 -15.351 35.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.313 6.313 4 C 0.011 3.989 5 H 0.131 0.869 6 C -0.229 4.229 7 C 0.299 3.701 8 O -0.455 6.455 9 N -0.336 5.336 10 C -0.027 4.027 11 C -0.157 4.157 12 C -0.082 4.082 13 C -0.030 4.030 14 O -0.317 6.317 15 C 0.017 3.983 16 H 0.096 0.904 17 C 0.030 3.970 18 N -0.401 5.401 19 C -0.368 4.368 20 H 0.075 0.925 21 C -0.256 4.256 22 N -0.634 5.634 23 Si 0.785 3.215 24 H -0.209 1.209 25 H -0.218 1.218 26 H -0.176 1.176 27 C -0.166 4.166 28 C -0.148 4.148 29 C -0.012 4.012 30 H 0.113 0.887 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.133 0.867 39 H 0.105 0.895 40 H 0.114 0.886 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.039 0.961 45 H 0.065 0.935 46 H 0.200 0.800 47 H 0.067 0.933 48 H 0.094 0.906 49 H 0.122 0.878 50 H 0.096 0.904 51 H 0.090 0.910 52 H 0.096 0.904 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -30.231 -10.216 -15.025 35.271 hybrid contribution 0.765 0.298 -0.399 0.913 sum -29.466 -9.918 -15.424 34.706 Atomic orbital electron populations 1.21772 0.93366 1.03431 1.02355 1.22825 0.96186 0.82218 1.01603 1.88037 1.19470 1.28622 1.95193 1.22022 0.83378 0.95590 0.97905 0.86863 1.22359 1.02746 1.04421 0.93372 1.21039 0.81902 0.88603 0.78577 1.90687 1.51609 1.47231 1.56001 1.48115 1.06497 1.25086 1.53901 1.22187 0.90036 0.93189 0.97325 1.21878 1.00953 0.96106 0.96768 1.21428 0.95126 0.96425 0.95263 1.23498 0.83049 1.01240 0.95186 1.89025 1.38614 1.45578 1.58516 1.23381 0.95504 0.88751 0.90691 0.90354 1.20918 0.82983 0.98503 0.94559 1.42621 1.04161 1.88439 1.04882 1.19075 0.87386 1.39832 0.90503 0.92516 1.25512 0.95260 1.02351 1.02448 1.69887 0.99927 1.57971 1.35573 0.85361 0.77088 0.78315 0.80722 1.20939 1.21845 1.17626 1.23145 0.91894 1.03840 0.97746 1.21790 0.96115 0.99909 0.97000 1.21654 0.99568 0.87409 0.92577 0.88670 0.92409 0.93174 0.92151 0.91048 0.92796 0.88911 0.88902 0.86686 0.89460 0.88576 0.89927 0.90842 0.89838 0.96136 0.93521 0.79963 0.93303 0.90620 0.87817 0.90372 0.90959 0.90367 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 71.98 0.74 -0.81 16 2 C 0.05 0.50 6.47 71.98 0.47 0.97 16 3 O -0.39 -7.35 9.55 -130.22 -1.24 -8.60 16 4 C 0.07 0.96 2.28 29.85 0.07 1.03 16 5 H 0.11 0.80 6.90 -2.39 -0.02 0.79 16 6 C -0.17 -1.49 9.09 71.98 0.65 -0.84 16 7 C 0.51 10.29 7.05 87.66 0.62 10.91 16 8 O -0.58 -17.74 15.97 15.73 0.25 -17.49 16 9 N -0.60 -8.95 2.97 -819.36 -2.43 -11.39 16 10 C 0.09 0.76 4.86 86.25 0.42 1.18 16 11 C -0.12 -1.12 4.57 30.36 0.14 -0.98 16 12 C -0.08 -1.25 0.61 -51.91 -0.03 -1.28 16 13 C 0.05 0.92 6.16 72.18 0.44 1.36 16 14 O -0.40 -12.25 11.10 -148.98 -1.65 -13.91 16 15 C 0.07 2.06 3.42 31.31 0.11 2.17 16 16 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 17 C 0.16 5.95 6.02 86.38 0.52 6.47 16 18 N -0.76 -36.68 5.34 -343.45 -1.83 -38.51 16 19 C -0.24 -13.96 10.47 84.03 0.88 -13.08 16 20 H 0.06 3.63 8.06 -2.91 -0.02 3.60 16 21 C -0.06 -3.88 5.50 84.86 0.47 -3.42 16 22 N -0.98 -64.05 13.97 21.65 0.30 -63.75 16 23 Si 0.96 46.83 27.73 68.60 1.90 48.73 16 24 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 25 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 26 H -0.25 -11.10 6.52 99.48 0.65 -10.45 16 27 C -0.13 -2.44 5.67 31.76 0.18 -2.26 16 28 C -0.11 -1.71 4.62 30.50 0.14 -1.57 16 29 C 0.11 1.84 6.12 86.39 0.53 2.37 16 30 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.50 8.09 -2.39 -0.02 0.48 16 34 H 0.07 0.44 8.01 -2.39 -0.02 0.43 16 35 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.09 0.48 5.93 -2.39 -0.01 0.47 16 37 H 0.09 0.42 8.01 -2.39 -0.02 0.40 16 38 H 0.12 0.36 4.71 -2.38 -0.01 0.35 16 39 H 0.09 0.60 6.90 -2.39 -0.02 0.59 16 40 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.07 1.18 6.61 -2.39 -0.02 1.17 16 43 H 0.08 1.59 6.44 -2.38 -0.02 1.58 16 44 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 46 H 0.37 17.32 5.48 -92.71 -0.51 16.81 16 47 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 48 H 0.08 1.57 7.75 -2.39 -0.02 1.56 16 49 H 0.10 1.52 7.83 -2.39 -0.02 1.50 16 50 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 51 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 52 H 0.08 1.20 6.80 -2.39 -0.02 1.18 16 53 H 0.08 1.58 7.02 -2.39 -0.02 1.57 16 Total: -1.00 -83.20 402.97 1.96 -81.24 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.33 Total: 21.44 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 6.34 Total: 2.23 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -3.96 Total: -113.65 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -2.65 Total: -39.99 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.90 Total: 48.73 kcal Total: -83.20 1.96 -81.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755464830.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.205 kcal (2) G-P(sol) polarization free energy of solvation -83.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds