Wall clock time and date at job start Sat Apr 11 2020 06:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 109.47289 * 2 1 4 4 C 1.42902 * 113.99982 * 180.02562 * 3 2 1 5 5 H 1.08991 * 109.47144 * 29.99330 * 4 3 2 6 6 C 1.53003 * 109.46498 * 269.99436 * 4 3 2 7 7 C 1.50696 * 109.47098 * 149.99926 * 4 3 2 8 8 O 1.21278 * 120.00203 * 12.57819 * 7 4 3 9 9 N 1.34777 * 119.99784 * 192.58544 * 7 4 3 10 10 C 1.46936 * 120.59108 * 174.95372 * 9 7 4 11 11 C 1.53288 * 108.71286 * 234.46194 * 10 9 7 12 12 C 1.52430 * 109.41946 * 306.26889 * 11 10 9 13 13 C 1.53601 * 110.44567 * 297.01647 * 12 11 10 14 14 O 1.43892 * 107.11219 * 239.50828 * 13 12 11 15 15 C 1.44424 * 107.00464 * 26.35820 * 14 13 12 16 16 H 1.08999 * 110.60424 * 78.93068 * 15 14 13 17 17 C 1.52995 * 110.60868 * 201.74693 * 15 14 13 18 18 N 1.46502 * 109.46808 * 298.54535 * 17 15 14 19 19 C 1.36941 * 120.00004 * 180.02562 * 18 17 15 20 20 H 1.07995 * 119.99787 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00174 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00033 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46866 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47111 * 119.99948 * 23 21 19 26 26 H 1.48496 * 109.46996 * 239.99840 * 23 21 19 27 27 C 1.54323 * 110.03731 * 181.93505 * 12 11 10 28 28 C 1.52424 * 110.98071 * 59.87196 * 12 11 10 29 29 C 1.46929 * 120.58894 * 355.22444 * 9 7 4 30 30 H 1.09007 * 109.46727 * 60.00036 * 1 2 3 31 31 H 1.08998 * 109.47091 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47343 * 300.00937 * 1 2 3 33 33 H 1.08997 * 109.46999 * 239.99456 * 2 1 3 34 34 H 1.08995 * 109.46941 * 119.99592 * 2 1 3 35 35 H 1.08997 * 109.47011 * 65.80001 * 6 4 3 36 36 H 1.09006 * 109.46814 * 185.79412 * 6 4 3 37 37 H 1.08998 * 109.47437 * 305.79700 * 6 4 3 38 38 H 1.08999 * 109.59188 * 354.22028 * 10 9 7 39 39 H 1.08992 * 109.59898 * 114.68726 * 10 9 7 40 40 H 1.09001 * 109.47568 * 186.29474 * 11 10 9 41 41 H 1.08988 * 109.48412 * 66.26177 * 11 10 9 42 42 H 1.08998 * 109.90777 * 358.87168 * 13 12 11 43 43 H 1.08994 * 109.90707 * 119.94953 * 13 12 11 44 44 H 1.08990 * 109.47650 * 58.54465 * 17 15 14 45 45 H 1.09001 * 109.47032 * 178.54999 * 17 15 14 46 46 H 0.96998 * 119.99856 * 359.97438 * 18 17 15 47 47 H 0.96997 * 120.00378 * 179.97438 * 22 21 19 48 48 H 1.09003 * 110.93103 * 216.21037 * 27 12 11 49 49 H 1.08996 * 110.93214 * 339.87745 * 27 12 11 50 50 H 1.08995 * 109.48049 * 180.16020 * 28 12 11 51 51 H 1.09006 * 109.48276 * 60.13850 * 28 12 11 52 52 H 1.08996 * 109.59828 * 245.32309 * 29 9 7 53 53 H 1.09004 * 109.59824 * 5.78366 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8631 0.6016 -0.5146 6 6 3.9398 1.5002 1.4418 7 6 3.8343 2.7264 -0.7110 8 8 3.0008 3.5687 -0.9691 9 7 5.1213 2.9228 -1.0595 10 6 5.5110 4.0994 -1.8487 11 6 6.2685 3.6268 -3.0948 12 6 7.4223 2.7237 -2.6744 13 6 8.4307 3.5047 -1.8186 14 8 9.6964 3.4509 -2.5009 15 6 9.4116 3.2766 -3.9060 16 1 9.1222 4.2248 -4.3592 17 6 10.6207 2.6820 -4.6308 18 7 11.7578 3.5986 -4.5165 19 6 12.9578 3.2761 -5.0921 20 1 13.0657 2.3462 -5.6307 21 6 14.0354 4.1443 -4.9834 22 7 13.9037 5.2778 -4.3275 23 14 15.6725 3.7040 -5.7680 24 1 15.5594 2.3859 -6.4426 25 1 16.0376 4.7407 -6.7665 26 1 16.7215 3.6356 -4.7192 27 6 8.2244 2.2785 -3.9153 28 6 6.9121 1.5037 -1.9163 29 6 6.1586 1.9611 -0.6622 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5140 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.7387 0.5440 1.9247 36 1 5.0133 1.6893 1.4432 37 1 3.4300 2.2959 1.9849 38 1 4.6194 4.6493 -2.1497 39 1 6.1561 4.7432 -1.2509 40 1 6.6603 4.4909 -3.6314 41 1 5.5907 3.0725 -3.7437 42 1 8.1075 4.5408 -1.7172 43 1 8.5166 3.0448 -0.8341 44 1 10.8796 1.7240 -4.1801 45 1 10.3772 2.5346 -5.6830 46 1 11.6605 4.4343 -4.0338 47 1 14.6568 5.8844 -4.2512 48 1 8.5770 1.2531 -3.8037 49 1 7.6307 2.3880 -4.8227 50 1 7.7556 0.8776 -1.6255 51 1 6.2394 0.9329 -2.5565 52 1 6.8541 2.4381 0.0283 53 1 5.6943 1.1006 -0.1806 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755464831.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:32 Heat of formation + Delta-G solvation = -139.231848 kcal Electronic energy + Delta-G solvation = -30841.132693 eV Core-core repulsion = 26712.132889 eV Total energy + Delta-G solvation = -4128.999805 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.98668 -40.74146 -38.89573 -37.86759 -36.36299 -34.71703 -33.52309 -33.40050 -32.17596 -31.22123 -30.75047 -28.38941 -26.77649 -25.94320 -24.89742 -24.40456 -23.77515 -23.27230 -22.07198 -21.13936 -19.50972 -19.15337 -18.44607 -17.82274 -17.28772 -17.04421 -16.79829 -16.54503 -16.47702 -16.21277 -15.94403 -15.45349 -15.20599 -15.13749 -14.76951 -14.65977 -14.41427 -14.21493 -14.02573 -13.91964 -13.58167 -13.44358 -13.29030 -13.19712 -13.09215 -12.91447 -12.81058 -12.77830 -12.47910 -12.31231 -12.25692 -12.21103 -12.05564 -12.01925 -11.91069 -11.48119 -11.39816 -11.29878 -10.97552 -10.89049 -10.50945 -10.45844 -9.70843 -8.99236 -7.93494 -5.23032 1.47301 1.47661 1.49117 1.59196 1.69613 2.56321 2.79127 2.97839 3.37761 3.39857 3.42516 3.57139 3.77207 3.82929 3.90206 3.98406 4.04390 4.06580 4.18090 4.19765 4.23253 4.32100 4.35444 4.38020 4.48951 4.50951 4.52774 4.56323 4.61614 4.69836 4.72208 4.79497 4.81598 4.88484 4.90689 4.93673 4.98964 5.01890 5.03132 5.09478 5.18929 5.20928 5.26358 5.27418 5.29340 5.48503 5.49202 6.08854 6.12510 6.28241 6.35429 7.07990 7.33782 8.10467 8.33713 9.30504 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.033144 B = 0.001895 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.584627 B =14772.073709 C =14904.061029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.394 6.394 4 C 0.072 3.928 5 H 0.114 0.886 6 C -0.172 4.172 7 C 0.510 3.490 8 O -0.576 6.576 9 N -0.602 5.602 10 C 0.111 3.889 11 C -0.112 4.112 12 C -0.081 4.081 13 C 0.047 3.953 14 O -0.394 6.394 15 C 0.075 3.925 16 H 0.057 0.943 17 C 0.156 3.844 18 N -0.744 5.744 19 C -0.246 4.246 20 H 0.078 0.922 21 C -0.079 4.079 22 N -0.971 5.971 23 Si 0.977 3.023 24 H -0.263 1.263 25 H -0.292 1.292 26 H -0.293 1.293 27 C -0.125 4.125 28 C -0.115 4.115 29 C 0.094 3.906 30 H 0.049 0.951 31 H 0.095 0.905 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.096 0.904 44 H 0.024 0.976 45 H 0.040 0.960 46 H 0.374 0.626 47 H 0.250 0.750 48 H 0.089 0.911 49 H 0.095 0.905 50 H 0.094 0.906 51 H 0.082 0.918 52 H 0.086 0.914 53 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.790 -14.818 11.015 31.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.313 6.313 4 C 0.011 3.989 5 H 0.132 0.868 6 C -0.229 4.229 7 C 0.299 3.701 8 O -0.455 6.455 9 N -0.336 5.336 10 C -0.012 4.012 11 C -0.150 4.150 12 C -0.081 4.081 13 C -0.030 4.030 14 O -0.314 6.314 15 C 0.017 3.983 16 H 0.075 0.925 17 C 0.030 3.970 18 N -0.386 5.386 19 C -0.378 4.378 20 H 0.096 0.904 21 C -0.271 4.271 22 N -0.622 5.622 23 Si 0.806 3.194 24 H -0.188 1.188 25 H -0.220 1.220 26 H -0.221 1.221 27 C -0.163 4.163 28 C -0.153 4.153 29 C -0.027 4.027 30 H 0.068 0.932 31 H 0.114 0.886 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.114 0.886 44 H 0.042 0.958 45 H 0.058 0.942 46 H 0.205 0.795 47 H 0.059 0.941 48 H 0.107 0.893 49 H 0.113 0.887 50 H 0.112 0.888 51 H 0.101 0.899 52 H 0.104 0.896 53 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -26.057 -14.337 10.878 31.668 hybrid contribution 1.030 0.678 -0.425 1.304 sum -25.027 -13.659 10.453 30.367 Atomic orbital electron populations 1.21773 0.93349 1.03432 1.02350 1.22829 0.96194 0.82217 1.01615 1.88037 1.19436 1.28640 1.95193 1.22019 0.83388 0.95556 0.97894 0.86820 1.22355 1.02702 1.04449 0.93395 1.21046 0.81830 0.88673 0.78548 1.90684 1.51619 1.46932 1.56282 1.48116 1.06726 1.25188 1.53559 1.21622 0.99630 0.87515 0.92403 1.21840 0.96236 0.99905 0.97064 1.21420 0.94907 0.96506 0.95298 1.23483 0.83033 0.99626 0.96821 1.89056 1.28719 1.94515 1.19094 1.23308 0.94776 0.97849 0.82324 0.92459 1.20918 0.86342 0.92868 0.96920 1.42515 1.08528 1.22441 1.65146 1.19733 0.89377 1.02843 1.25867 0.90364 1.25645 1.02034 0.97057 1.02402 1.69863 1.31647 1.12202 1.48466 0.85013 0.79396 0.77673 0.77301 1.18760 1.21961 1.22066 1.23139 0.94835 0.99645 0.98712 1.21894 1.00978 0.96002 0.96466 1.22291 0.90074 0.93080 0.97280 0.93177 0.88647 0.92421 0.92135 0.91043 0.88825 0.88994 0.92795 0.90520 0.90624 0.90553 0.90581 0.92747 0.88603 0.95824 0.94197 0.79476 0.94075 0.89292 0.88681 0.88766 0.89900 0.89567 0.86551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.28 71.98 0.74 -0.88 16 2 C 0.05 0.53 6.47 71.98 0.47 0.99 16 3 O -0.39 -7.62 9.55 -130.25 -1.24 -8.86 16 4 C 0.07 1.03 2.28 29.85 0.07 1.10 16 5 H 0.11 0.90 6.89 -2.39 -0.02 0.89 16 6 C -0.17 -1.66 9.09 71.98 0.65 -1.00 16 7 C 0.51 10.87 7.04 87.66 0.62 11.49 16 8 O -0.58 -18.32 15.97 15.71 0.25 -18.07 16 9 N -0.60 -9.87 2.96 -818.52 -2.43 -12.30 16 10 C 0.11 2.05 6.12 86.39 0.53 2.58 16 11 C -0.11 -1.94 4.59 30.50 0.14 -1.80 16 12 C -0.08 -1.42 0.61 -51.91 -0.03 -1.45 16 13 C 0.05 1.09 6.16 72.18 0.44 1.54 16 14 O -0.39 -13.93 11.10 -148.98 -1.65 -15.58 16 15 C 0.07 2.43 3.42 31.32 0.11 2.54 16 16 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 17 C 0.16 6.33 6.02 86.38 0.52 6.85 16 18 N -0.74 -39.78 5.53 -343.47 -1.90 -41.68 16 19 C -0.25 -14.21 9.99 84.03 0.84 -13.37 16 20 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 21 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 22 N -0.97 -61.55 13.06 21.65 0.28 -61.27 16 23 Si 0.98 46.96 29.55 68.60 2.03 48.99 16 24 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 26 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 27 C -0.13 -2.67 5.67 31.77 0.18 -2.49 16 28 C -0.12 -1.33 4.62 30.50 0.14 -1.19 16 29 C 0.09 0.93 4.91 86.39 0.42 1.35 16 30 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.53 8.08 -2.39 -0.02 0.51 16 34 H 0.07 0.48 8.01 -2.39 -0.02 0.46 16 35 H 0.09 0.49 8.01 -2.39 -0.02 0.47 16 36 H 0.09 0.59 5.97 -2.38 -0.01 0.57 16 37 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.08 1.73 7.02 -2.39 -0.02 1.71 16 39 H 0.08 1.35 6.90 -2.39 -0.02 1.33 16 40 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.05 1.27 6.61 -2.39 -0.02 1.25 16 43 H 0.10 1.87 6.44 -2.39 -0.02 1.86 16 44 H 0.02 0.97 8.13 -2.39 -0.02 0.95 16 45 H 0.04 1.54 8.14 -2.39 -0.02 1.53 16 46 H 0.37 21.73 7.62 -92.71 -0.71 21.03 16 47 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 48 H 0.09 1.78 7.75 -2.39 -0.02 1.77 16 49 H 0.09 1.74 7.83 -2.39 -0.02 1.72 16 50 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 52 H 0.09 0.78 6.80 -2.39 -0.02 0.76 16 53 H 0.12 0.52 4.71 -2.39 -0.01 0.51 16 Total: -1.00 -81.27 406.16 1.83 -79.43 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: 0.19 Total: 27.32 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 6.31 Total: 2.02 kcal Atomic # 7 Polarization: -111.20 SS G_CDS: -4.04 Total: -115.25 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -2.65 Total: -42.51 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -81.27 1.83 -79.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755464831.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.797 kcal (2) G-P(sol) polarization free energy of solvation -81.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds