Wall clock time and date at job start Sat Apr 11 2020 06:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45203 * 109.47268 * 2 1 4 4 C 1.34231 * 117.00110 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99703 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99838 * 179.97438 * 4 3 2 7 7 C 1.53047 * 109.45654 * 179.97438 * 6 4 3 8 8 C 1.53189 * 109.30930 * 178.62610 * 7 6 4 9 9 N 1.46922 * 108.77606 * 54.63896 * 8 7 6 10 10 C 1.34779 * 120.63268 * 126.36799 * 9 8 7 11 11 O 1.21587 * 119.99921 * 185.22792 * 10 9 8 12 12 N 1.34768 * 119.99965 * 5.22164 * 10 9 8 13 13 C 1.46505 * 120.00011 * 175.01971 * 12 10 9 14 14 C 1.53000 * 109.46887 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47111 * 299.99850 * 14 13 12 16 16 C 1.53000 * 109.47588 * 59.99866 * 14 13 12 17 17 C 1.53007 * 109.46937 * 180.02562 * 14 13 12 18 18 C 1.50700 * 109.46917 * 180.02562 * 17 14 13 19 19 H 1.08001 * 120.00455 * 359.97438 * 18 17 14 20 20 C 1.37881 * 119.99599 * 180.02562 * 18 17 14 21 21 N 1.31516 * 120.00217 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99878 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.47100 * 89.99582 * 22 20 18 24 24 H 1.48498 * 109.47263 * 209.99754 * 22 20 18 25 25 H 1.48499 * 109.47306 * 329.99889 * 22 20 18 26 26 C 1.46926 * 118.73872 * 306.64154 * 9 8 7 27 27 C 1.52758 * 109.00901 * 53.30843 * 26 9 8 28 28 H 1.09000 * 109.47711 * 300.00546 * 1 2 3 29 29 H 1.09003 * 109.47115 * 60.00162 * 1 2 3 30 30 H 1.09000 * 109.47330 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47288 * 239.99423 * 2 1 3 32 32 H 1.09005 * 109.46685 * 119.99213 * 2 1 3 33 33 H 1.08999 * 109.45799 * 299.96702 * 6 4 3 34 34 H 1.09002 * 109.49549 * 58.67616 * 7 6 4 35 35 H 1.08995 * 109.52643 * 298.59783 * 7 6 4 36 36 H 1.08996 * 109.58878 * 294.84526 * 8 7 6 37 37 H 1.08997 * 109.70372 * 174.49374 * 8 7 6 38 38 H 0.97005 * 120.00344 * 355.02046 * 12 10 9 39 39 H 1.08991 * 109.46926 * 60.00299 * 13 12 10 40 40 H 1.08994 * 109.47101 * 299.99979 * 13 12 10 41 41 H 1.08997 * 109.47492 * 60.00572 * 15 14 13 42 42 H 1.09004 * 109.47019 * 180.02562 * 15 14 13 43 43 H 1.08996 * 109.46982 * 300.00084 * 15 14 13 44 44 H 1.09011 * 109.46779 * 59.99784 * 16 14 13 45 45 H 1.08994 * 109.47357 * 179.97438 * 16 14 13 46 46 H 1.09000 * 109.47374 * 300.00244 * 16 14 13 47 47 H 1.09006 * 109.46600 * 299.99809 * 17 14 13 48 48 H 1.08996 * 109.47406 * 59.99763 * 17 14 13 49 49 H 0.96998 * 120.00234 * 180.02562 * 21 20 18 50 50 H 1.08996 * 109.58820 * 173.14725 * 26 9 8 51 51 H 1.08999 * 109.58519 * 293.56821 * 26 9 8 52 52 H 1.09006 * 109.56654 * 185.55577 * 27 26 9 53 53 H 1.08994 * 109.38993 * 65.51777 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4491 2.8570 0.0014 8 6 6.0309 4.2736 -0.0338 9 7 5.4663 5.0446 1.0821 10 6 6.2727 5.6782 1.9566 11 8 5.7984 6.2331 2.9289 12 7 7.6049 5.6965 1.7533 13 6 8.4708 6.4757 2.6418 14 6 9.9264 6.3271 2.1944 15 6 10.3300 4.8524 2.2533 16 6 10.0740 6.8393 0.7603 17 6 10.8308 7.1403 3.1227 18 6 12.2644 6.9944 2.6816 19 1 12.5064 6.3826 1.8252 20 6 13.2673 7.6413 3.3722 21 7 12.9728 8.3860 4.4154 22 14 15.0444 7.4600 2.8259 23 1 15.3721 8.5261 1.8453 24 1 15.9393 7.5797 4.0049 25 1 15.2345 6.1301 2.1932 26 6 4.0058 5.1069 1.2302 27 6 3.4465 3.6855 1.2480 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5137 0.8901 33 1 3.5855 3.4686 -0.8908 34 1 5.7850 2.3037 -0.8756 35 1 5.7862 2.3475 0.9040 36 1 5.7702 4.7524 -0.9777 37 1 7.1154 4.2280 0.0654 38 1 7.9904 5.1938 1.0188 39 1 8.3653 6.1109 3.6635 40 1 8.1836 7.5262 2.5996 41 1 9.6858 4.2727 1.5922 42 1 11.3671 4.7466 1.9349 43 1 10.2249 4.4875 3.2749 44 1 9.7864 7.8900 0.7184 45 1 11.1110 6.7339 0.4418 46 1 9.4298 6.2597 0.0992 47 1 10.5433 8.1909 3.0811 48 1 10.7256 6.7750 4.1442 49 1 13.6783 8.8414 4.9010 50 1 3.7543 5.6088 2.1645 51 1 3.5765 5.6550 0.3915 52 1 2.3571 3.7220 1.2582 53 1 3.8015 3.1681 2.1392 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358707772.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:37 Heat of formation + Delta-G solvation = -135.683251 kcal Electronic energy + Delta-G solvation = -30410.878987 eV Core-core repulsion = 26282.033061 eV Total energy + Delta-G solvation = -4128.845926 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.17583 -40.23533 -38.07103 -37.13407 -36.64493 -33.92358 -33.16345 -32.13345 -31.96975 -31.23200 -27.35264 -26.86843 -26.50245 -25.73790 -23.97977 -23.51430 -22.82428 -22.04155 -20.77160 -19.63380 -18.82372 -18.07041 -17.59227 -17.00140 -16.66000 -16.36410 -16.00685 -15.60087 -14.98704 -14.71416 -14.43861 -14.34472 -14.15860 -14.04638 -13.91358 -13.60511 -13.29669 -13.11808 -12.99485 -12.83808 -12.56348 -12.43132 -12.32879 -12.09944 -12.05163 -12.00137 -11.64396 -11.22957 -11.14358 -11.08017 -11.00748 -10.96268 -10.84349 -10.65960 -10.62694 -10.38119 -10.23886 -9.97847 -9.86325 -9.19252 -8.95316 -8.91483 -8.47380 -8.34758 -5.98827 -4.00093 1.81513 2.21547 2.68150 3.31571 3.34072 3.38684 3.40435 3.96071 4.10131 4.25623 4.31477 4.45770 4.46346 4.50815 4.64728 4.72855 4.79334 4.91230 5.01039 5.13013 5.22430 5.29068 5.30714 5.36654 5.38975 5.46619 5.49504 5.52445 5.64742 5.65858 5.69106 5.76279 5.86019 6.05369 6.18288 6.21202 6.27719 6.40445 6.42782 6.61028 6.63938 6.80556 6.96673 7.07864 7.08837 7.15469 7.36183 7.65695 7.78150 7.99772 8.09001 8.41699 8.75146 9.04679 9.62912 11.12564 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026291 B = 0.001910 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.756084 B =14658.891382 C =15221.440849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.357 6.357 4 C 0.466 3.534 5 O -0.506 6.506 6 C -0.077 4.077 7 C -0.120 4.120 8 C 0.114 3.886 9 N -0.636 5.636 10 C 0.705 3.295 11 O -0.591 6.591 12 N -0.737 5.737 13 C 0.145 3.855 14 C -0.073 4.073 15 C -0.126 4.126 16 C -0.126 4.126 17 C 0.036 3.964 18 C -0.511 4.511 19 H 0.059 0.941 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.889 3.111 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.275 1.275 26 C 0.132 3.868 27 C -0.127 4.127 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.393 0.607 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.027 0.973 42 H 0.067 0.933 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.066 0.934 46 H 0.027 0.973 47 H 0.019 0.981 48 H 0.019 0.981 49 H 0.260 0.740 50 H 0.101 0.899 51 H 0.068 0.932 52 H 0.089 0.911 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.206 -13.962 -12.836 30.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.274 6.274 4 C 0.309 3.691 5 O -0.393 6.393 6 C -0.096 4.096 7 C -0.159 4.159 8 C -0.010 4.010 9 N -0.375 5.375 10 C 0.406 3.594 11 O -0.469 6.469 12 N -0.394 5.394 13 C 0.022 3.978 14 C -0.073 4.073 15 C -0.183 4.183 16 C -0.183 4.183 17 C -0.001 4.001 18 C -0.549 4.549 19 H 0.077 0.923 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.717 3.283 23 H -0.208 1.208 24 H -0.214 1.214 25 H -0.200 1.200 26 C 0.009 3.991 27 C -0.165 4.165 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.130 0.870 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.231 0.769 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.046 0.954 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.085 0.915 46 H 0.046 0.954 47 H 0.037 0.963 48 H 0.037 0.963 49 H 0.069 0.931 50 H 0.119 0.881 51 H 0.086 0.914 52 H 0.108 0.892 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -24.246 -13.725 -11.962 30.320 hybrid contribution 1.257 -0.598 -0.639 1.532 sum -22.989 -14.323 -12.601 29.874 Atomic orbital electron populations 1.21810 0.92481 1.03064 1.03623 1.23045 0.95474 0.80152 1.02647 1.86505 1.24563 1.32454 1.83916 1.23789 0.80549 0.92682 0.72080 1.90684 1.60439 1.43152 1.44997 1.21095 0.96601 0.89745 1.02197 1.21865 0.92037 0.97278 1.04690 1.21602 0.98661 0.90596 0.90135 1.47297 1.06185 1.54574 1.29469 1.15899 0.81663 0.79503 0.82307 1.90904 1.74951 1.51232 1.29824 1.45556 1.04733 1.53760 1.35323 1.21506 0.88962 0.94634 0.92689 1.20922 0.92259 0.96865 0.97291 1.21753 1.01371 0.94807 1.00401 1.21750 1.01655 0.99783 0.95102 1.19087 0.93011 0.94415 0.93593 1.21185 0.91421 1.29066 1.13273 0.92268 1.25015 0.98918 0.95489 0.95092 1.69966 1.32723 1.31442 1.19199 0.86647 0.85194 0.78360 0.78083 1.20798 1.21360 1.19977 1.21303 0.78508 0.95397 1.03883 1.21899 1.01802 0.96452 0.96365 0.91356 0.91427 0.90195 0.91235 0.91192 0.87004 0.89586 0.90227 0.90915 0.89675 0.76938 0.91932 0.92033 0.95449 0.91442 0.93327 0.93335 0.91460 0.95428 0.96306 0.96285 0.93056 0.88079 0.91408 0.89233 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 10.29 37.16 0.38 -0.25 16 2 C 0.06 0.40 6.19 37.16 0.23 0.63 16 3 O -0.36 -2.94 10.10 -39.26 -0.40 -3.33 16 4 C 0.47 4.29 7.26 36.00 0.26 4.56 16 5 O -0.51 -6.11 15.73 -18.75 -0.29 -6.41 16 6 C -0.08 -0.56 2.59 -91.73 -0.24 -0.79 16 7 C -0.12 -0.95 4.65 -26.61 -0.12 -1.07 16 8 C 0.11 0.92 6.39 -3.71 -0.02 0.90 16 9 N -0.64 -7.07 2.98 -178.78 -0.53 -7.61 16 10 C 0.70 10.88 8.30 -86.92 -0.72 10.16 16 11 O -0.59 -11.50 15.77 5.29 0.08 -11.41 16 12 N -0.74 -10.94 4.87 -65.23 -0.32 -11.26 16 13 C 0.15 2.61 4.57 -4.04 -0.02 2.59 16 14 C -0.07 -1.38 0.54 -154.50 -0.08 -1.46 16 15 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 16 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 17 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 18 C -0.51 -13.54 7.65 -34.44 -0.26 -13.80 16 19 H 0.06 1.50 5.68 -52.49 -0.30 1.21 16 20 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 21 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 22 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 26 C 0.13 1.20 6.41 -3.93 -0.03 1.18 16 27 C -0.13 -0.95 5.28 -26.83 -0.14 -1.09 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.45 8.13 -51.93 -0.42 0.02 16 32 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 33 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.62 8.07 -51.93 -0.42 0.20 16 35 H 0.08 0.78 8.13 -51.93 -0.42 0.36 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.69 5.64 -51.93 -0.29 0.39 16 38 H 0.39 4.95 3.65 -40.82 -0.15 4.80 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 42 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 45 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 46 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 50 H 0.10 1.12 6.99 -51.93 -0.36 0.75 16 51 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 52 H 0.09 0.54 8.08 -51.93 -0.42 0.12 16 53 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 412.92 15.07 6.22 6.22 Total: -1.00 -33.51 412.92 -9.14 -42.65 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -9.24 Total: 0.65 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -0.38 Total: -0.02 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -0.11 Total: -44.52 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.61 Total: -21.15 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.51 -9.14 -42.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358707772.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.035 kcal (2) G-P(sol) polarization free energy of solvation -33.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds