Wall clock time and date at job start Sat Apr 11 2020 06:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45203 * 109.47268 * 2 1 4 4 C 1.34231 * 117.00110 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99703 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99838 * 179.97438 * 4 3 2 7 7 C 1.53047 * 109.45654 * 179.97438 * 6 4 3 8 8 C 1.53189 * 109.30930 * 178.62610 * 7 6 4 9 9 N 1.46922 * 108.77606 * 54.63896 * 8 7 6 10 10 C 1.34779 * 120.63268 * 126.36799 * 9 8 7 11 11 O 1.21587 * 119.99921 * 185.22792 * 10 9 8 12 12 N 1.34768 * 119.99965 * 5.22164 * 10 9 8 13 13 C 1.46505 * 120.00011 * 175.01971 * 12 10 9 14 14 C 1.53000 * 109.46887 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47111 * 299.99850 * 14 13 12 16 16 C 1.53000 * 109.47588 * 59.99866 * 14 13 12 17 17 C 1.53007 * 109.46937 * 180.02562 * 14 13 12 18 18 C 1.50700 * 109.46917 * 180.02562 * 17 14 13 19 19 H 1.08001 * 120.00455 * 359.97438 * 18 17 14 20 20 C 1.37881 * 119.99599 * 180.02562 * 18 17 14 21 21 N 1.31516 * 120.00217 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99878 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.47100 * 89.99582 * 22 20 18 24 24 H 1.48498 * 109.47263 * 209.99754 * 22 20 18 25 25 H 1.48499 * 109.47306 * 329.99889 * 22 20 18 26 26 C 1.46926 * 118.73872 * 306.64154 * 9 8 7 27 27 C 1.52758 * 109.00901 * 53.30843 * 26 9 8 28 28 H 1.09000 * 109.47711 * 300.00546 * 1 2 3 29 29 H 1.09003 * 109.47115 * 60.00162 * 1 2 3 30 30 H 1.09000 * 109.47330 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47288 * 239.99423 * 2 1 3 32 32 H 1.09005 * 109.46685 * 119.99213 * 2 1 3 33 33 H 1.08999 * 109.45799 * 299.96702 * 6 4 3 34 34 H 1.09002 * 109.49549 * 58.67616 * 7 6 4 35 35 H 1.08995 * 109.52643 * 298.59783 * 7 6 4 36 36 H 1.08996 * 109.58878 * 294.84526 * 8 7 6 37 37 H 1.08997 * 109.70372 * 174.49374 * 8 7 6 38 38 H 0.97005 * 120.00344 * 355.02046 * 12 10 9 39 39 H 1.08991 * 109.46926 * 60.00299 * 13 12 10 40 40 H 1.08994 * 109.47101 * 299.99979 * 13 12 10 41 41 H 1.08997 * 109.47492 * 60.00572 * 15 14 13 42 42 H 1.09004 * 109.47019 * 180.02562 * 15 14 13 43 43 H 1.08996 * 109.46982 * 300.00084 * 15 14 13 44 44 H 1.09011 * 109.46779 * 59.99784 * 16 14 13 45 45 H 1.08994 * 109.47357 * 179.97438 * 16 14 13 46 46 H 1.09000 * 109.47374 * 300.00244 * 16 14 13 47 47 H 1.09006 * 109.46600 * 299.99809 * 17 14 13 48 48 H 1.08996 * 109.47406 * 59.99763 * 17 14 13 49 49 H 0.96998 * 120.00234 * 180.02562 * 21 20 18 50 50 H 1.08996 * 109.58820 * 173.14725 * 26 9 8 51 51 H 1.08999 * 109.58519 * 293.56821 * 26 9 8 52 52 H 1.09006 * 109.56654 * 185.55577 * 27 26 9 53 53 H 1.08994 * 109.38993 * 65.51777 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4491 2.8570 0.0014 8 6 6.0309 4.2736 -0.0338 9 7 5.4663 5.0446 1.0821 10 6 6.2727 5.6782 1.9566 11 8 5.7984 6.2331 2.9289 12 7 7.6049 5.6965 1.7533 13 6 8.4708 6.4757 2.6418 14 6 9.9264 6.3271 2.1944 15 6 10.3300 4.8524 2.2533 16 6 10.0740 6.8393 0.7603 17 6 10.8308 7.1403 3.1227 18 6 12.2644 6.9944 2.6816 19 1 12.5064 6.3826 1.8252 20 6 13.2673 7.6413 3.3722 21 7 12.9728 8.3860 4.4154 22 14 15.0444 7.4600 2.8259 23 1 15.3721 8.5261 1.8453 24 1 15.9393 7.5797 4.0049 25 1 15.2345 6.1301 2.1932 26 6 4.0058 5.1069 1.2302 27 6 3.4465 3.6855 1.2480 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5137 0.8901 33 1 3.5855 3.4686 -0.8908 34 1 5.7850 2.3037 -0.8756 35 1 5.7862 2.3475 0.9040 36 1 5.7702 4.7524 -0.9777 37 1 7.1154 4.2280 0.0654 38 1 7.9904 5.1938 1.0188 39 1 8.3653 6.1109 3.6635 40 1 8.1836 7.5262 2.5996 41 1 9.6858 4.2727 1.5922 42 1 11.3671 4.7466 1.9349 43 1 10.2249 4.4875 3.2749 44 1 9.7864 7.8900 0.7184 45 1 11.1110 6.7339 0.4418 46 1 9.4298 6.2597 0.0992 47 1 10.5433 8.1909 3.0811 48 1 10.7256 6.7750 4.1442 49 1 13.6783 8.8414 4.9010 50 1 3.7543 5.6088 2.1645 51 1 3.5765 5.6550 0.3915 52 1 2.3571 3.7220 1.2582 53 1 3.8015 3.1681 2.1392 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358707772.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:37 Heat of formation + Delta-G solvation = -155.254470 kcal Electronic energy + Delta-G solvation = -30411.727659 eV Core-core repulsion = 26282.033061 eV Total energy + Delta-G solvation = -4129.694598 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.93384 -41.26774 -39.17913 -38.28536 -37.54767 -35.35513 -34.41456 -33.61228 -32.50911 -32.01018 -29.12226 -28.08161 -27.94892 -26.93632 -24.90692 -24.57631 -23.88972 -22.89299 -21.56970 -20.72707 -19.97836 -18.95704 -18.71956 -18.33971 -17.64853 -17.43541 -17.10936 -16.71363 -16.48412 -15.76133 -15.49074 -15.44943 -15.28210 -14.85937 -14.78706 -14.67673 -14.40812 -14.33433 -14.06014 -13.92703 -13.67290 -13.61466 -13.28855 -13.09050 -12.88556 -12.85346 -12.70999 -12.56988 -12.50278 -12.32484 -12.29343 -12.21212 -11.97607 -11.85297 -11.74252 -11.52433 -11.52209 -11.39625 -11.26019 -10.95752 -10.83281 -10.49588 -10.19449 -9.49555 -8.12245 -6.20010 1.12080 1.43670 1.44291 1.54434 1.59165 1.70132 2.14666 2.45545 2.96301 3.22186 3.45362 3.65467 3.69581 3.98563 3.99783 4.00168 4.07808 4.10953 4.13561 4.23825 4.30865 4.34358 4.34848 4.56414 4.67363 4.70830 4.73122 4.75453 4.79908 4.84928 4.87488 4.92836 4.95536 4.97786 5.06351 5.12765 5.14169 5.15917 5.24021 5.41044 5.46565 5.50210 5.51929 5.55694 5.57058 5.61759 5.82420 5.91265 5.92457 6.32550 6.68732 6.94277 6.98780 7.47578 7.57212 9.00210 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026291 B = 0.001910 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.756084 B =14658.891382 C =15221.440849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.358 6.358 4 C 0.467 3.533 5 O -0.540 6.540 6 C -0.072 4.072 7 C -0.115 4.115 8 C 0.111 3.889 9 N -0.629 5.629 10 C 0.699 3.301 11 O -0.638 6.638 12 N -0.726 5.726 13 C 0.161 3.839 14 C -0.065 4.065 15 C -0.121 4.121 16 C -0.120 4.120 17 C 0.040 3.960 18 C -0.513 4.513 19 H 0.073 0.927 20 C -0.006 4.006 21 N -0.938 5.938 22 Si 0.959 3.041 23 H -0.275 1.275 24 H -0.291 1.291 25 H -0.260 1.260 26 C 0.130 3.870 27 C -0.116 4.116 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.145 0.855 34 H 0.098 0.902 35 H 0.054 0.946 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.407 0.593 39 H 0.039 0.961 40 H 0.045 0.955 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.034 0.966 44 H 0.038 0.962 45 H 0.056 0.944 46 H 0.069 0.931 47 H -0.013 1.013 48 H -0.015 1.015 49 H 0.259 0.741 50 H 0.076 0.924 51 H 0.099 0.901 52 H 0.109 0.891 53 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.141 -15.373 -16.250 33.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.274 6.274 4 C 0.312 3.688 5 O -0.430 6.430 6 C -0.091 4.091 7 C -0.154 4.154 8 C -0.011 4.011 9 N -0.366 5.366 10 C 0.401 3.599 11 O -0.520 6.520 12 N -0.384 5.384 13 C 0.036 3.964 14 C -0.065 4.065 15 C -0.178 4.178 16 C -0.177 4.177 17 C 0.003 3.997 18 C -0.551 4.551 19 H 0.092 0.908 20 C -0.203 4.203 21 N -0.579 5.579 22 Si 0.785 3.215 23 H -0.201 1.201 24 H -0.217 1.217 25 H -0.184 1.184 26 C 0.007 3.993 27 C -0.155 4.155 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.163 0.837 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.124 0.876 37 H 0.106 0.894 38 H 0.247 0.753 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.075 0.925 46 H 0.088 0.912 47 H 0.006 0.994 48 H 0.003 0.997 49 H 0.068 0.932 50 H 0.095 0.905 51 H 0.118 0.882 52 H 0.127 0.873 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -25.213 -15.180 -15.444 33.236 hybrid contribution 1.425 -0.207 0.436 1.504 sum -23.788 -15.387 -15.008 32.061 Atomic orbital electron populations 1.21818 0.90485 1.04254 1.03819 1.23255 0.97054 0.79422 1.02337 1.86510 1.24034 1.33399 1.83474 1.24169 0.80629 0.93032 0.70987 1.90674 1.61183 1.44382 1.46737 1.21153 0.96020 0.88762 1.03160 1.21802 0.92574 0.96953 1.04054 1.21876 0.98801 0.90363 0.90092 1.47379 1.06664 1.53495 1.29070 1.16086 0.81812 0.79612 0.82402 1.90876 1.75723 1.53376 1.32058 1.45213 1.04490 1.53564 1.35142 1.21054 0.88995 0.94098 0.92268 1.20719 0.91493 0.97076 0.97219 1.21683 1.01587 0.93909 1.00597 1.21676 1.01943 0.99914 0.94141 1.18966 0.94092 0.93417 0.93262 1.21598 0.92130 1.28255 1.13136 0.90849 1.25954 1.03727 0.95367 0.95212 1.70126 1.34058 1.32930 1.20819 0.85532 0.79489 0.79005 0.77518 1.20094 1.21701 1.18386 1.21477 0.77353 0.96443 1.04025 1.21797 1.02843 0.95141 0.95706 0.91376 0.90938 0.88549 0.91217 0.91935 0.83727 0.88358 0.92720 0.87602 0.89383 0.75265 0.94211 0.93682 0.91488 0.92430 0.94676 0.94279 0.92483 0.91238 0.99430 0.99698 0.93227 0.90518 0.88250 0.87266 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.29 71.98 0.74 -0.20 16 2 C 0.05 0.63 6.19 71.98 0.45 1.07 16 3 O -0.36 -5.22 10.10 -51.42 -0.52 -5.74 16 4 C 0.47 7.78 7.26 71.24 0.52 8.30 16 5 O -0.54 -12.57 15.73 21.95 0.35 -12.22 16 6 C -0.07 -0.83 2.59 -11.51 -0.03 -0.86 16 7 C -0.12 -1.51 4.65 30.67 0.14 -1.37 16 8 C 0.11 1.39 6.39 86.36 0.55 1.94 16 9 N -0.63 -12.65 2.98 -837.79 -2.50 -15.15 16 10 C 0.70 21.12 8.30 179.06 1.49 22.61 16 11 O -0.64 -25.43 15.77 -3.99 -0.06 -25.49 16 12 N -0.73 -20.67 4.87 -478.55 -2.33 -23.00 16 13 C 0.16 5.89 4.57 86.38 0.39 6.28 16 14 C -0.06 -2.45 0.54 -52.18 -0.03 -2.48 16 15 C -0.12 -4.10 8.05 71.98 0.58 -3.52 16 16 C -0.12 -3.93 8.05 71.98 0.58 -3.35 16 17 C 0.04 2.06 4.04 29.85 0.12 2.18 16 18 C -0.51 -27.48 7.65 25.60 0.20 -27.29 16 19 H 0.07 3.66 5.68 -2.91 -0.02 3.64 16 20 C -0.01 -0.33 5.46 84.66 0.46 0.14 16 21 N -0.94 -57.25 13.29 21.45 0.28 -56.96 16 22 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 23 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 25 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 26 C 0.13 2.09 6.41 86.22 0.55 2.64 16 27 C -0.12 -1.51 5.28 30.53 0.16 -1.35 16 28 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.07 0.82 8.13 -2.39 -0.02 0.80 16 32 H 0.06 0.83 8.13 -2.38 -0.02 0.81 16 33 H 0.15 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.10 1.10 8.07 -2.39 -0.02 1.08 16 35 H 0.05 1.01 8.13 -2.39 -0.02 0.99 16 36 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.09 1.07 5.64 -2.39 -0.01 1.06 16 38 H 0.41 9.02 3.65 -92.70 -0.34 8.68 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.07 1.73 6.86 -2.39 -0.02 1.72 16 42 H 0.06 2.08 6.62 -2.38 -0.02 2.06 16 43 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 45 H 0.06 2.00 6.62 -2.39 -0.02 1.99 16 46 H 0.07 1.69 6.86 -2.39 -0.02 1.68 16 47 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 48 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 49 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 50 H 0.08 1.67 6.99 -2.39 -0.02 1.65 16 51 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 52 H 0.11 1.02 8.08 -2.38 -0.02 1.00 16 53 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -77.01 412.92 4.67 -72.34 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.55 Total: 15.82 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 6.87 Total: 4.75 kcal Atomic # 7 Polarization: -90.57 SS G_CDS: -4.54 Total: -95.11 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -0.24 Total: -43.46 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -77.01 4.67 -72.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358707772.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.916 kcal (2) G-P(sol) polarization free energy of solvation -77.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds