Wall clock time and date at job start Sat Apr 11 2020 06:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 110.99881 * 2 1 4 4 C 1.46901 * 111.00121 * 123.95311 * 2 1 3 5 5 C 1.52999 * 109.46942 * 66.04472 * 4 2 1 6 6 C 1.53004 * 109.46867 * 179.97438 * 5 4 2 7 7 N 1.46500 * 109.47111 * 180.02562 * 6 5 4 8 8 C 1.46502 * 119.99926 * 270.00230 * 7 6 5 9 9 C 1.50704 * 109.47141 * 264.94772 * 8 7 6 10 10 H 1.07996 * 119.99767 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99873 * 180.02562 * 9 8 7 12 12 N 1.31510 * 119.99695 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 119.99935 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47281 * 90.00237 * 13 11 9 15 15 H 1.48500 * 109.47084 * 210.00170 * 13 11 9 16 16 H 1.48500 * 109.47634 * 329.99832 * 13 11 9 17 17 C 1.34770 * 120.00055 * 89.99998 * 7 6 5 18 18 O 1.21279 * 120.00347 * 5.29356 * 17 7 6 19 19 C 1.50702 * 119.99899 * 185.29174 * 17 7 6 20 20 H 1.09002 * 109.85881 * 309.28871 * 19 17 7 21 21 O 1.43356 * 109.97832 * 188.24629 * 19 17 7 22 22 C 1.43980 * 109.97846 * 240.51179 * 21 19 17 23 23 C 1.53997 * 104.53694 * 23.61544 * 22 21 19 24 24 H 1.08999 * 109.51293 * 78.65077 * 23 22 21 25 25 C 1.50958 * 112.59346 * 200.98637 * 23 22 21 26 26 O 1.42691 * 111.78993 * 66.27587 * 25 23 22 27 27 C 1.43262 * 112.51483 * 60.08355 * 26 25 23 28 28 C 1.52713 * 108.26514 * 294.39126 * 27 26 25 29 29 C 1.53120 * 110.62909 * 60.18493 * 28 27 26 30 30 H 1.09000 * 112.27443 * 76.26398 * 29 28 27 31 31 H 1.09001 * 109.46916 * 296.04751 * 1 2 3 32 32 H 1.08994 * 109.47043 * 56.04504 * 1 2 3 33 33 H 1.09000 * 109.47054 * 176.04683 * 1 2 3 34 34 H 1.09000 * 109.46979 * 183.95575 * 3 2 1 35 35 H 1.09005 * 109.47154 * 303.95427 * 3 2 1 36 36 H 1.08999 * 109.47582 * 63.95486 * 3 2 1 37 37 H 1.09001 * 109.47290 * 306.04650 * 4 2 1 38 38 H 1.09002 * 109.47068 * 186.04631 * 4 2 1 39 39 H 1.08997 * 109.46784 * 60.00463 * 5 4 2 40 40 H 1.08996 * 109.47389 * 300.00401 * 5 4 2 41 41 H 1.09001 * 109.47200 * 60.00280 * 6 5 4 42 42 H 1.09002 * 109.47234 * 300.00215 * 6 5 4 43 43 H 1.09004 * 109.47196 * 24.94431 * 8 7 6 44 44 H 1.08998 * 109.47071 * 144.94682 * 8 7 6 45 45 H 0.97000 * 119.99843 * 179.97438 * 12 11 9 46 46 H 1.08999 * 110.42268 * 264.85376 * 22 21 19 47 47 H 1.09001 * 110.42410 * 142.37880 * 22 21 19 48 48 H 1.09008 * 109.01592 * 186.86609 * 25 23 22 49 49 H 1.08992 * 109.02029 * 305.67637 * 25 23 22 50 50 H 1.08995 * 109.70309 * 54.07872 * 27 26 25 51 51 H 1.09000 * 109.70368 * 174.69701 * 27 26 25 52 52 H 1.08998 * 109.24912 * 180.48565 * 28 27 26 53 53 H 1.09004 * 109.24399 * 299.93095 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9703 6 6 2.1804 -3.0404 2.1549 7 7 1.8324 -4.4544 1.9945 8 6 0.5760 -4.9668 2.5469 9 6 0.8301 -5.5565 3.9103 10 1 1.8278 -5.5506 4.3237 11 6 -0.2109 -6.1045 4.6294 12 7 0.0110 -6.6195 5.8189 13 14 -1.9364 -6.1152 3.9139 14 1 -2.1428 -7.3644 3.1379 15 1 -2.9296 -6.0473 5.0159 16 1 -2.1088 -4.9426 3.0193 17 6 2.6680 -5.2839 1.3387 18 8 3.7503 -4.8837 0.9653 19 6 2.2576 -6.7087 1.0694 20 1 1.9106 -7.1747 1.9916 21 8 3.3666 -7.4458 0.5385 22 6 3.0431 -7.9447 -0.7729 23 6 1.9365 -7.0028 -1.2826 24 1 2.3832 -6.0721 -1.6323 25 6 1.1139 -7.6194 -2.3880 26 8 0.3532 -8.7338 -1.9237 27 6 -0.5632 -8.3766 -0.8820 28 6 0.2453 -7.9457 0.3398 29 6 1.1279 -6.7401 0.0049 30 1 0.5584 -5.8120 -0.0438 31 1 -0.3633 0.4513 0.9233 32 1 -0.3633 0.5740 -0.8524 33 1 -0.3633 -1.0252 -0.0708 34 1 3.0828 1.3432 -0.0709 35 1 1.5898 1.9164 -0.8525 36 1 1.7044 1.8724 0.9233 37 1 1.5612 -0.3872 2.0628 38 1 3.0798 -0.6611 1.1756 39 1 2.0659 -2.6213 0.0452 40 1 0.5472 -2.3475 0.9323 41 1 1.7464 -2.6618 3.0803 42 1 3.2647 -2.9355 2.1925 43 1 -0.1428 -4.1517 2.6319 44 1 0.1760 -5.7365 1.8869 45 1 -0.7214 -7.0047 6.3249 46 1 2.6725 -8.9678 -0.7099 47 1 3.9153 -7.8946 -1.4247 48 1 0.4338 -6.8666 -2.7868 49 1 1.7803 -7.9512 -3.1840 50 1 -1.1942 -7.5524 -1.2143 51 1 -1.1836 -9.2360 -0.6278 52 1 -0.4373 -7.6783 1.1463 53 1 0.8765 -8.7735 0.6631 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377998139.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:56 Heat of formation + Delta-G solvation = -140.087862 kcal Electronic energy + Delta-G solvation = -32520.781623 eV Core-core repulsion = 28391.744699 eV Total energy + Delta-G solvation = -4129.036924 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.20991 -40.35579 -38.77042 -38.34107 -36.96116 -34.78642 -34.31601 -33.23485 -32.71454 -30.05683 -29.85238 -28.48535 -27.18412 -26.41132 -25.08041 -24.34240 -23.99229 -23.08966 -21.82521 -20.71045 -20.05192 -19.11958 -18.22924 -17.91795 -17.51693 -17.09869 -16.80808 -16.56084 -16.37262 -16.08506 -16.03059 -15.97338 -15.55154 -15.23971 -15.06214 -14.88927 -14.66664 -14.36613 -14.14651 -14.02014 -13.74498 -13.55913 -13.26640 -13.25959 -13.12745 -12.86151 -12.69908 -12.64624 -12.59410 -12.39166 -12.34089 -12.26751 -12.03193 -12.01866 -11.75068 -11.68206 -11.52843 -11.42156 -11.03045 -10.79974 -10.68809 -10.16837 -9.50816 -9.32905 -8.30746 -6.40035 1.37994 1.41023 1.50375 1.55767 2.04172 2.33558 2.83781 2.97067 3.00821 3.03595 3.18555 3.45723 3.55470 3.79912 3.90751 4.01183 4.02792 4.10838 4.19678 4.20790 4.30903 4.34627 4.41489 4.43259 4.49590 4.51070 4.57779 4.59187 4.63016 4.65685 4.67421 4.70547 4.72698 4.76454 4.78973 4.83242 4.86157 4.97464 4.99777 5.01241 5.10784 5.12187 5.21596 5.24400 5.41830 5.62155 5.87220 6.03608 6.10059 6.15598 6.17365 6.52623 6.66652 7.18828 7.29408 8.85992 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007460 B = 0.004914 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3752.260705 B = 5696.782360 C = 7533.189516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.563 5.563 3 C 0.024 3.976 4 C 0.063 3.937 5 C -0.110 4.110 6 C 0.116 3.884 7 N -0.591 5.591 8 C 0.215 3.785 9 C -0.547 4.547 10 H 0.021 0.979 11 C 0.021 3.979 12 N -0.943 5.943 13 Si 0.934 3.066 14 H -0.248 1.248 15 H -0.288 1.288 16 H -0.233 1.233 17 C 0.505 3.495 18 O -0.582 6.582 19 C 0.071 3.929 20 H 0.095 0.905 21 O -0.386 6.386 22 C 0.054 3.946 23 C -0.147 4.147 24 H 0.089 0.911 25 C 0.077 3.923 26 O -0.386 6.386 27 C 0.062 3.938 28 C -0.154 4.154 29 C -0.094 4.094 30 H 0.108 0.892 31 H 0.028 0.972 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.028 0.972 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.269 0.731 46 H 0.075 0.925 47 H 0.098 0.902 48 H 0.073 0.927 49 H 0.117 0.883 50 H 0.073 0.927 51 H 0.112 0.888 52 H 0.078 0.922 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.318 6.228 -17.716 19.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.287 5.287 3 C -0.123 4.123 4 C -0.065 4.065 5 C -0.149 4.149 6 C -0.007 4.007 7 N -0.322 5.322 8 C 0.094 3.906 9 C -0.585 4.585 10 H 0.040 0.960 11 C -0.179 4.179 12 N -0.582 5.582 13 Si 0.755 3.245 14 H -0.172 1.172 15 H -0.214 1.214 16 H -0.155 1.155 17 C 0.294 3.706 18 O -0.463 6.463 19 C 0.010 3.990 20 H 0.113 0.887 21 O -0.305 6.305 22 C -0.022 4.022 23 C -0.166 4.166 24 H 0.108 0.892 25 C 0.000 4.000 26 O -0.304 6.304 27 C -0.014 4.014 28 C -0.192 4.192 29 C -0.112 4.112 30 H 0.126 0.874 31 H 0.046 0.954 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.047 0.953 37 H 0.059 0.941 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.093 0.907 47 H 0.116 0.884 48 H 0.091 0.909 49 H 0.135 0.865 50 H 0.091 0.909 51 H 0.130 0.870 52 H 0.096 0.904 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.459 5.904 -18.156 19.606 hybrid contribution -0.523 0.523 1.907 2.045 sum -4.982 6.428 -16.249 18.171 Atomic orbital electron populations 1.22474 0.86668 1.02566 1.01040 1.61964 1.08931 1.14748 1.43049 1.22422 1.00949 0.87849 1.01128 1.21959 1.00274 0.92535 0.91744 1.21740 1.01274 0.94300 0.97554 1.21379 1.00418 0.79975 0.98918 1.47897 1.21871 1.08993 1.53394 1.19779 0.82371 0.95795 0.92683 1.21505 0.95204 1.39695 1.02116 0.96015 1.25834 1.03783 0.93587 0.94650 1.70070 1.34309 1.40062 1.13718 0.85932 0.77966 0.81395 0.79226 1.17194 1.21418 1.15530 1.21147 0.83810 0.88399 0.77263 1.90568 1.23059 1.78043 1.54660 1.22928 0.87527 0.89230 0.99284 0.88700 1.88525 1.38296 1.70194 1.33478 1.23499 0.98347 0.97568 0.82767 1.22708 0.96699 1.00615 0.96544 0.89238 1.21958 0.94401 0.89508 0.94125 1.88112 1.54057 1.33930 1.54331 1.22693 0.90905 1.02184 0.85634 1.22264 0.99564 0.96999 1.00370 1.22621 0.95110 1.00866 0.92650 0.87384 0.95391 0.90120 0.91506 0.91283 0.90110 0.95309 0.94113 0.90850 0.92573 0.91072 0.90358 0.92028 0.93109 0.93022 0.92230 0.90710 0.88382 0.90865 0.86525 0.90865 0.87014 0.90373 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.32 127.69 1.19 1.58 16 2 N -0.56 -12.45 5.02 -948.84 -4.76 -17.21 16 3 C 0.02 0.42 9.57 127.69 1.22 1.65 16 4 C 0.06 1.56 4.96 86.30 0.43 1.98 16 5 C -0.11 -3.15 5.46 30.60 0.17 -2.99 16 6 C 0.12 4.15 5.43 86.38 0.47 4.62 16 7 N -0.59 -24.00 2.47 -826.14 -2.04 -26.04 16 8 C 0.22 8.92 3.75 85.63 0.32 9.24 16 9 C -0.55 -28.95 9.34 25.60 0.24 -28.71 16 10 H 0.02 1.36 8.06 -2.91 -0.02 1.34 16 11 C 0.02 1.09 5.47 84.66 0.46 1.55 16 12 N -0.94 -55.59 13.96 21.45 0.30 -55.29 16 13 Si 0.93 37.46 27.47 68.60 1.88 39.34 16 14 H -0.25 -9.07 7.11 99.48 0.71 -8.36 16 15 H -0.29 -11.86 7.11 99.48 0.71 -11.16 16 16 H -0.23 -8.12 6.54 99.48 0.65 -7.47 16 17 C 0.51 21.93 6.91 87.66 0.61 22.54 16 18 O -0.58 -28.34 16.10 15.56 0.25 -28.09 16 19 C 0.07 2.79 2.33 30.62 0.07 2.86 16 20 H 0.10 4.22 6.78 -2.39 -0.02 4.20 16 21 O -0.39 -15.40 10.61 -130.40 -1.38 -16.79 16 22 C 0.05 1.54 6.78 72.32 0.49 2.04 16 23 C -0.15 -3.65 3.02 -10.68 -0.03 -3.68 16 24 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 25 C 0.08 1.42 6.17 71.32 0.44 1.86 16 26 O -0.39 -8.39 10.58 -148.98 -1.58 -9.96 16 27 C 0.06 1.26 6.82 71.89 0.49 1.75 16 28 C -0.15 -4.12 4.80 30.54 0.15 -3.97 16 29 C -0.09 -2.73 1.98 -9.54 -0.02 -2.74 16 30 H 0.11 3.00 7.08 -2.39 -0.02 2.98 16 31 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16 33 H 0.07 1.33 6.47 -2.39 -0.02 1.31 16 34 H 0.07 1.17 8.12 -2.39 -0.02 1.15 16 35 H 0.08 1.16 8.12 -2.38 -0.02 1.14 16 36 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.04 0.96 8.12 -2.39 -0.02 0.94 16 38 H 0.07 1.82 8.06 -2.39 -0.02 1.80 16 39 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.07 1.93 6.55 -2.39 -0.02 1.91 16 41 H 0.08 2.75 8.07 -2.39 -0.02 2.73 16 42 H 0.06 2.37 7.35 -2.39 -0.02 2.35 16 43 H 0.05 1.97 7.09 -2.39 -0.02 1.95 16 44 H 0.05 1.95 3.78 -2.39 -0.01 1.95 16 45 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 46 H 0.07 2.03 7.49 -2.39 -0.02 2.01 16 47 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 48 H 0.07 1.12 8.13 -2.38 -0.02 1.10 16 49 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.07 1.23 8.11 -2.39 -0.02 1.21 16 51 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 52 H 0.08 2.19 7.47 -2.39 -0.02 2.17 16 53 H 0.07 1.95 7.25 -2.39 -0.02 1.93 16 Total: -1.00 -71.18 404.60 0.19 -71.00 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: 0.82 Total: 33.47 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 6.69 Total: 9.57 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -6.50 Total: -98.54 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -2.71 Total: -54.84 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 1.88 Total: 39.34 kcal Total: -71.18 0.19 -71.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377998139.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.092 kcal (2) G-P(sol) polarization free energy of solvation -71.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds