Wall clock time and date at job start Sat Apr 11 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45192 * 109.47490 * 2 1 4 4 C 1.34220 * 117.00491 * 179.97438 * 3 2 1 5 5 O 1.20835 * 119.99729 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00816 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.52006 * 299.92539 * 6 4 3 8 8 C 1.53347 * 109.69179 * 179.75103 * 6 4 3 9 9 C 1.53040 * 109.61152 * 178.74983 * 8 6 4 10 10 C 1.53191 * 109.31184 * 61.37409 * 9 8 6 11 11 N 1.46928 * 108.77499 * 305.36667 * 10 9 8 12 12 C 1.34779 * 120.62902 * 233.58920 * 11 10 9 13 13 O 1.21280 * 119.99932 * 180.02562 * 12 11 10 14 14 C 1.50701 * 120.00247 * 0.02562 * 12 11 10 15 15 N 1.46893 * 109.47390 * 180.02562 * 14 12 11 16 16 C 1.46894 * 111.00119 * 293.95611 * 15 14 12 17 17 C 1.46905 * 111.00170 * 169.99849 * 15 14 12 18 18 H 1.08996 * 109.46551 * 59.31832 * 17 15 14 19 19 C 1.53000 * 109.47081 * 299.31786 * 17 15 14 20 20 C 1.52996 * 109.47143 * 179.32065 * 17 15 14 21 21 C 1.50700 * 109.47120 * 183.33064 * 20 17 15 22 22 H 1.07995 * 119.99568 * 356.61054 * 21 20 17 23 23 C 1.37882 * 120.00157 * 176.61776 * 21 20 17 24 24 N 1.31516 * 119.99561 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99918 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47293 * 359.97438 * 25 23 21 27 27 H 1.48492 * 109.47150 * 119.99771 * 25 23 21 28 28 H 1.48501 * 109.46762 * 239.99688 * 25 23 21 29 29 C 1.46918 * 118.74046 * 53.60848 * 11 10 9 30 30 H 1.09000 * 109.47233 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46822 * 299.99883 * 1 2 3 32 32 H 1.09000 * 109.46714 * 60.00035 * 1 2 3 33 33 H 1.09000 * 109.46987 * 239.99588 * 2 1 3 34 34 H 1.08996 * 109.46809 * 120.00476 * 2 1 3 35 35 H 1.09007 * 109.41453 * 58.71090 * 8 6 4 36 36 H 1.08999 * 109.43296 * 298.79994 * 8 6 4 37 37 H 1.09006 * 109.49271 * 301.42083 * 9 8 6 38 38 H 1.08999 * 109.52761 * 181.34602 * 9 8 6 39 39 H 1.08998 * 109.58247 * 185.57925 * 10 9 8 40 40 H 1.08990 * 109.58429 * 65.15674 * 10 9 8 41 41 H 1.09005 * 109.46848 * 300.00762 * 14 12 11 42 42 H 1.09002 * 109.46818 * 59.99633 * 14 12 11 43 43 H 1.08997 * 109.47237 * 52.48811 * 16 15 14 44 44 H 1.09000 * 109.47555 * 172.48957 * 16 15 14 45 45 H 1.08997 * 109.47233 * 292.48534 * 16 15 14 46 46 H 1.09002 * 109.46950 * 180.02562 * 19 17 15 47 47 H 1.09003 * 109.47182 * 300.00318 * 19 17 15 48 48 H 1.09002 * 109.47141 * 59.99699 * 19 17 15 49 49 H 1.09008 * 109.46945 * 303.32296 * 20 17 15 50 50 H 1.09000 * 109.47315 * 63.32550 * 20 17 15 51 51 H 0.97001 * 119.99229 * 180.02562 * 24 23 21 52 52 H 1.09008 * 109.58706 * 66.17625 * 29 11 10 53 53 H 1.08999 * 109.58953 * 186.45661 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5864 0.0005 6 6 3.9209 2.9372 0.0000 7 1 3.5870 3.4692 -0.8909 8 6 5.4525 2.8627 0.0070 9 6 6.0358 4.2772 -0.0250 10 6 5.5842 5.0398 1.2245 11 7 4.1177 4.9934 1.3026 12 6 3.4001 6.1281 1.4207 13 8 2.1901 6.0764 1.4847 14 6 4.1011 7.4610 1.4732 15 7 3.1055 8.5332 1.6031 16 6 2.2702 8.6249 0.3982 17 6 3.7521 9.8197 1.8946 18 1 4.4451 10.0683 1.0909 19 6 4.5179 9.7179 3.2152 20 6 2.6868 10.9123 2.0059 21 6 3.3553 12.2452 2.2236 22 1 4.4284 12.2998 2.3319 23 6 2.5968 13.3951 2.2845 24 7 1.2900 13.3285 2.1521 25 14 3.4253 15.0472 2.5551 26 1 4.8926 14.8518 2.6730 27 1 3.1354 15.9406 1.4049 28 1 2.9065 15.6626 3.8030 29 6 3.4485 3.6865 1.2499 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8899 35 1 5.7924 2.3098 -0.8688 36 1 5.7866 2.3525 0.9105 37 1 5.6822 4.7964 -0.9158 38 1 7.1242 4.2222 -0.0441 39 1 5.9140 6.0766 1.1588 40 1 6.0123 4.5736 2.1117 41 1 4.7737 7.4843 2.3307 42 1 4.6746 7.6062 0.5577 43 1 1.8538 7.6439 0.1693 44 1 1.4594 9.3325 0.5711 45 1 2.8777 8.9663 -0.4399 46 1 4.9973 10.6726 3.4318 47 1 3.8249 9.4691 4.0190 48 1 5.2768 8.9394 3.1361 49 1 2.1024 10.9448 1.0863 50 1 2.0289 10.6940 2.8470 51 1 0.7565 14.1375 2.1946 52 1 3.7025 3.1098 2.1394 53 1 2.3691 3.8303 1.2037 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411219621.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:11 Heat of formation + Delta-G solvation = -120.885088 kcal Electronic energy + Delta-G solvation = -30597.263200 eV Core-core repulsion = 26469.058971 eV Total energy + Delta-G solvation = -4128.204229 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.17723 -40.12956 -38.06316 -37.08076 -36.62229 -33.43370 -33.07086 -32.35160 -31.58161 -30.87297 -28.62983 -26.88420 -25.69805 -24.99215 -23.98124 -23.41734 -22.72753 -22.01411 -20.53629 -19.23322 -18.94245 -18.01468 -17.31893 -17.05881 -16.62682 -16.43197 -15.93553 -15.57570 -15.15429 -14.64646 -14.52943 -14.35334 -14.22413 -13.96067 -13.89111 -13.81225 -13.47110 -13.20186 -13.00656 -12.89806 -12.55051 -12.32493 -12.10759 -12.03808 -11.90251 -11.73884 -11.55886 -11.42762 -11.40097 -11.28734 -11.05629 -10.91567 -10.88591 -10.81010 -10.72693 -10.69051 -10.33177 -9.93850 -9.55867 -9.17854 -9.03160 -8.84340 -8.31710 -7.67223 -5.97502 -3.99291 1.77283 2.21839 2.70507 2.79391 3.31798 3.39424 3.42387 4.10634 4.18111 4.34216 4.39919 4.52429 4.53180 4.56979 4.57305 4.65694 4.72300 4.79730 4.85796 5.04382 5.17282 5.27864 5.34229 5.37887 5.38612 5.38867 5.41946 5.44676 5.47256 5.55857 5.61769 5.66655 5.84783 5.87450 5.93829 6.06562 6.15225 6.21626 6.28783 6.32208 6.64667 6.71405 6.90251 7.09750 7.20521 7.35955 7.56723 7.60417 7.80114 7.90291 8.10518 8.26059 8.45580 9.07283 9.63658 11.13925 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021417 B = 0.002061 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.040546 B =13583.730903 C =14537.041545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.353 6.353 4 C 0.472 3.528 5 O -0.507 6.507 6 C -0.096 4.096 7 H 0.114 0.886 8 C -0.103 4.103 9 C -0.135 4.135 10 C 0.103 3.897 11 N -0.621 5.621 12 C 0.519 3.481 13 O -0.511 6.511 14 C 0.034 3.966 15 N -0.522 5.522 16 C 0.024 3.976 17 C 0.086 3.914 18 H 0.028 0.972 19 C -0.133 4.133 20 C 0.030 3.970 21 C -0.516 4.516 22 H 0.056 0.944 23 C 0.057 3.943 24 N -0.892 5.892 25 Si 0.891 3.109 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.284 1.284 29 C 0.125 3.875 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.105 0.895 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.013 0.987 46 H 0.068 0.932 47 H 0.056 0.944 48 H 0.029 0.971 49 H 0.023 0.977 50 H 0.023 0.977 51 H 0.259 0.741 52 H 0.070 0.930 53 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.461 -26.425 -5.383 27.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 O -0.270 6.270 4 C 0.314 3.686 5 O -0.394 6.394 6 C -0.116 4.116 7 H 0.132 0.868 8 C -0.140 4.140 9 C -0.173 4.173 10 C -0.020 4.020 11 N -0.357 5.357 12 C 0.308 3.692 13 O -0.384 6.384 14 C -0.098 4.098 15 N -0.246 5.246 16 C -0.124 4.124 17 C -0.021 4.021 18 H 0.046 0.954 19 C -0.190 4.190 20 C -0.007 4.007 21 C -0.555 4.555 22 H 0.074 0.926 23 C -0.145 4.145 24 N -0.531 5.531 25 Si 0.719 3.281 26 H -0.198 1.198 27 H -0.211 1.211 28 H -0.211 1.211 29 C 0.002 3.998 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.091 0.909 41 H 0.123 0.877 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.032 0.968 46 H 0.087 0.913 47 H 0.075 0.925 48 H 0.048 0.952 49 H 0.041 0.959 50 H 0.042 0.958 51 H 0.069 0.931 52 H 0.088 0.912 53 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.502 -26.735 -4.938 27.954 hybrid contribution 1.029 0.884 -0.635 1.498 sum 7.530 -25.850 -5.573 27.496 Atomic orbital electron populations 1.21823 0.92358 1.03030 1.03927 1.23064 0.95647 0.79953 1.02544 1.86553 1.24269 1.32597 1.83574 1.23524 0.80700 0.92239 0.72113 1.90667 1.60513 1.42987 1.45257 1.21557 0.97351 0.89980 1.02746 0.86836 1.21486 0.91154 0.97371 1.04035 1.21950 1.01367 0.95247 0.98727 1.21815 0.79717 1.02205 0.98231 1.48137 1.06924 1.05693 1.74977 1.20909 0.87821 0.85271 0.75244 1.90683 1.13885 1.86414 1.47419 1.22066 0.95409 0.90021 1.02278 1.61836 1.20912 1.04788 1.37104 1.22490 0.97840 1.02695 0.89366 1.21910 0.96847 0.87693 0.95661 0.95381 1.21813 0.98676 1.00657 0.97861 1.19194 0.93023 0.90441 0.98027 1.21233 0.93413 0.91607 1.49284 0.92553 1.25006 0.94817 0.99101 0.95531 1.69988 1.04506 1.28281 1.50367 0.86562 0.79607 0.84243 0.77722 1.19806 1.21133 1.21060 1.21340 1.00098 0.83479 0.94927 0.90179 0.91170 0.91322 0.91246 0.91152 0.90588 0.90631 0.90978 0.89706 0.89042 0.90949 0.87743 0.92677 0.91122 0.90096 0.96834 0.91284 0.92476 0.95167 0.95863 0.95823 0.93083 0.91197 0.87522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.29 37.16 0.38 -0.49 16 2 C 0.06 0.46 6.19 37.16 0.23 0.69 16 3 O -0.35 -3.44 10.15 -39.23 -0.40 -3.84 16 4 C 0.47 4.68 7.26 36.00 0.26 4.94 16 5 O -0.51 -6.01 15.75 -18.76 -0.30 -6.30 16 6 C -0.10 -0.81 2.79 -91.49 -0.26 -1.07 16 7 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 8 C -0.10 -0.72 4.48 -26.53 -0.12 -0.84 16 9 C -0.13 -0.80 6.08 -26.61 -0.16 -0.96 16 10 C 0.10 0.75 6.34 -3.71 -0.02 0.72 16 11 N -0.62 -6.51 2.97 -172.77 -0.51 -7.02 16 12 C 0.52 7.43 7.36 -10.98 -0.08 7.35 16 13 O -0.51 -9.30 13.78 5.56 0.08 -9.22 16 14 C 0.03 0.48 3.62 -4.98 -0.02 0.46 16 15 N -0.52 -9.85 4.37 -236.34 -1.03 -10.88 16 16 C 0.02 0.45 8.63 60.06 0.52 0.97 16 17 C 0.09 1.77 2.12 -67.71 -0.14 1.62 16 18 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 19 C -0.13 -2.45 8.80 37.16 0.33 -2.12 16 20 C 0.03 0.79 4.19 -27.88 -0.12 0.67 16 21 C -0.52 -14.28 8.46 -34.44 -0.29 -14.57 16 22 H 0.06 1.50 6.82 -52.49 -0.36 1.14 16 23 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 24 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 25 Si 0.89 21.49 29.54 -169.99 -5.02 16.46 16 26 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 29 C 0.12 1.22 5.63 -3.71 -0.02 1.20 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 34 H 0.07 0.51 8.13 -51.93 -0.42 0.08 16 35 H 0.08 0.54 8.07 -51.92 -0.42 0.12 16 36 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.61 5.93 -51.93 -0.31 0.30 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.10 1.34 5.65 -51.93 -0.29 1.05 16 42 H 0.06 0.70 7.67 -51.93 -0.40 0.30 16 43 H 0.07 1.29 5.79 -51.93 -0.30 0.99 16 44 H 0.08 1.70 6.37 -51.93 -0.33 1.37 16 45 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 46 H 0.07 1.33 6.77 -51.93 -0.35 0.98 16 47 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.03 0.44 6.21 -51.93 -0.32 0.12 16 49 H 0.02 0.64 6.23 -51.92 -0.32 0.32 16 50 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 52 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 53 H 0.11 1.25 7.00 -51.93 -0.36 0.89 16 LS Contribution 411.79 15.07 6.21 6.21 Total: -1.00 -34.00 411.79 -9.10 -43.10 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -9.24 Total: -2.51 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 0.39 Total: 0.09 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: -0.81 Total: -43.98 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.62 Total: -19.36 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.00 -9.10 -43.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411219621.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.789 kcal (2) G-P(sol) polarization free energy of solvation -34.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds