Wall clock time and date at job start Sat Apr 11 2020 06:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34225 * 117.00686 * 2 1 4 4 O 1.20832 * 119.99672 * 5.07284 * 3 2 1 5 5 C 1.50696 * 120.00700 * 185.07419 * 3 2 1 6 6 C 1.53001 * 109.47219 * 174.72924 * 5 3 2 7 7 C 1.52994 * 115.55032 * 295.29422 * 6 5 3 8 8 N 1.46900 * 109.47514 * 268.25565 * 7 6 5 9 9 C 1.46896 * 111.00268 * 206.33299 * 8 7 6 10 10 C 1.50701 * 109.47558 * 72.09918 * 9 8 7 11 11 H 1.08004 * 119.99478 * 355.42807 * 10 9 8 12 12 C 1.37872 * 120.00443 * 175.41734 * 10 9 8 13 13 N 1.31521 * 119.99884 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00383 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47060 * 59.99802 * 14 12 10 16 16 H 1.48497 * 109.47348 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47016 * 300.00283 * 14 12 10 18 18 C 1.46897 * 111.00437 * 82.37424 * 8 7 6 19 19 C 1.53000 * 109.47028 * 200.42599 * 18 8 7 20 20 N 1.46910 * 109.46592 * 179.97438 * 19 18 8 21 21 C 1.47012 * 110.99915 * 293.63126 * 20 19 18 22 22 C 1.53097 * 109.25682 * 177.61397 * 21 20 19 23 23 O 1.43006 * 109.26151 * 56.84746 * 22 21 20 24 24 C 1.43021 * 113.73926 * 301.33126 * 23 22 21 25 25 C 1.47012 * 110.99574 * 170.00064 * 20 19 18 26 26 C 1.52999 * 117.51930 * 80.99814 * 6 5 3 27 27 C 1.53001 * 117.49822 * 149.62892 * 6 5 3 28 28 H 1.09002 * 109.47214 * 304.56062 * 1 2 3 29 29 H 1.09005 * 109.47255 * 64.55883 * 1 2 3 30 30 H 1.09003 * 109.47508 * 184.55638 * 1 2 3 31 31 H 1.08991 * 109.47145 * 54.72482 * 5 3 2 32 32 H 1.09007 * 109.46673 * 294.72506 * 5 3 2 33 33 H 1.09003 * 109.47160 * 148.24728 * 7 6 5 34 34 H 1.09006 * 109.46805 * 28.25331 * 7 6 5 35 35 H 1.09000 * 109.47379 * 192.10565 * 9 8 7 36 36 H 1.09006 * 109.46772 * 312.10783 * 9 8 7 37 37 H 0.96996 * 119.99824 * 179.97438 * 13 12 10 38 38 H 1.08997 * 109.47008 * 80.41867 * 18 8 7 39 39 H 1.09001 * 109.47126 * 320.42137 * 18 8 7 40 40 H 1.08994 * 109.47110 * 299.99156 * 19 18 8 41 41 H 1.08995 * 109.47342 * 60.00357 * 19 18 8 42 42 H 1.08999 * 109.50845 * 297.54531 * 21 20 19 43 43 H 1.08992 * 109.51015 * 57.67665 * 21 20 19 44 44 H 1.09002 * 109.50515 * 296.91231 * 22 21 20 45 45 H 1.08996 * 109.54155 * 176.80641 * 22 21 20 46 46 H 1.08999 * 109.50813 * 298.73368 * 24 23 22 47 47 H 1.08996 * 109.54497 * 178.62627 * 24 23 22 48 48 H 1.09006 * 109.50537 * 302.32086 * 25 20 19 49 49 H 1.08999 * 109.51374 * 62.40956 * 25 20 19 50 50 H 1.09001 * 117.49989 * 214.96673 * 26 6 5 51 51 H 1.09000 * 117.49962 * 359.97438 * 26 6 5 52 52 H 1.09008 * 117.50003 * 359.97152 * 27 6 5 53 53 H 1.08999 * 117.50407 * 144.99520 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4070 2.2074 0.0925 5 6 3.5618 1.2771 -0.1154 6 6 3.9864 2.7430 -0.2229 7 6 3.5125 3.4769 -1.4790 8 7 4.5353 3.3639 -2.5274 9 6 4.4570 4.4936 -3.4631 10 6 4.9616 5.7421 -2.7867 11 1 5.2363 5.7171 -1.7425 12 6 5.0726 6.9163 -3.5007 13 7 4.7377 6.9468 -4.7722 14 14 5.6986 8.4638 -2.6624 15 1 7.0708 8.2266 -2.1464 16 1 5.7232 9.5811 -3.6402 17 1 4.7991 8.8139 -1.5339 18 6 4.4218 2.0831 -3.2378 19 6 5.7461 1.7683 -3.9363 20 7 5.6327 0.4871 -4.6462 21 6 5.4705 -0.6266 -3.7005 22 6 5.2968 -1.9315 -4.4821 23 8 6.4199 -2.1158 -5.3480 24 6 6.6073 -1.0497 -6.2827 25 6 6.7943 0.2641 -5.5193 26 6 4.0782 3.5494 1.0741 27 6 5.3547 3.1256 0.3448 28 1 -0.3634 0.5830 0.8463 29 1 -0.3634 0.4415 -0.9280 30 1 -0.3634 -1.0244 0.0816 31 1 3.8874 0.7383 -1.0051 32 1 4.0188 0.8303 0.7676 33 1 3.3469 4.5285 -1.2447 34 1 2.5815 3.0319 -1.8302 35 1 5.0695 4.2824 -4.3397 36 1 3.4214 4.6400 -3.7701 37 1 4.8155 7.7730 -5.2745 38 1 3.6260 2.1484 -3.9798 39 1 4.1899 1.2916 -2.5251 40 1 5.9780 2.5597 -4.6491 41 1 6.5418 1.7029 -3.1943 42 1 6.3541 -0.6972 -3.0662 43 1 4.5903 -0.4532 -3.0815 44 1 4.3839 -1.8815 -5.0757 45 1 5.2328 -2.7677 -3.7859 46 1 5.7326 -0.9740 -6.9287 47 1 7.4913 -1.2474 -6.8889 48 1 6.8804 1.0878 -6.2281 49 1 7.6992 0.2086 -4.9142 50 1 3.8010 4.6027 1.0325 51 1 3.8356 3.0357 2.0043 52 1 5.9522 2.3330 0.7953 53 1 5.9173 3.9001 -0.1765 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440774753.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:32 Heat of formation + Delta-G solvation = -109.637018 kcal Electronic energy + Delta-G solvation = -31797.497789 eV Core-core repulsion = 27669.781313 eV Total energy + Delta-G solvation = -4127.716477 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.62274 -40.56376 -39.61671 -37.78333 -37.17204 -36.32155 -34.57150 -32.17422 -31.36206 -30.93364 -29.37860 -28.13317 -27.60070 -25.83337 -24.94196 -23.83297 -23.16834 -22.61215 -21.58040 -21.22923 -19.90532 -18.64056 -18.46449 -17.68736 -17.54456 -17.29260 -17.08847 -16.84746 -16.36591 -16.20323 -16.06905 -15.93320 -15.67425 -15.34172 -14.93911 -14.72472 -14.51871 -14.36864 -14.14949 -14.02010 -13.64208 -13.41343 -13.21225 -13.06394 -12.94842 -12.78549 -12.73886 -12.54803 -12.40327 -12.29115 -12.26816 -12.07333 -11.91420 -11.76591 -11.61022 -11.53594 -11.40388 -11.22243 -10.97312 -10.67891 -10.60429 -10.50445 -9.37625 -9.01261 -8.18487 -6.27386 1.21938 1.39535 1.42128 1.49702 1.77039 2.39117 2.62102 2.94288 3.01925 3.13992 3.54341 3.61056 3.82226 3.86070 3.95266 3.98262 4.05457 4.07000 4.20375 4.25183 4.30376 4.31723 4.33812 4.37284 4.42321 4.46463 4.56970 4.64649 4.69926 4.73086 4.75829 4.80660 4.85159 4.87941 4.90241 4.92114 4.97463 5.06672 5.08416 5.16884 5.19613 5.25610 5.31948 5.43887 5.50507 5.68257 5.93850 6.01900 6.10037 6.20180 6.36373 6.64438 6.79469 6.87753 7.41462 8.92186 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.006466 B = 0.004730 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4329.355940 B = 5918.140932 C = 9249.404643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.457 3.543 4 O -0.529 6.529 5 C -0.070 4.070 6 C -0.117 4.117 7 C 0.112 3.888 8 N -0.524 5.524 9 C 0.211 3.789 10 C -0.513 4.513 11 H 0.062 0.938 12 C 0.003 3.997 13 N -0.935 5.935 14 Si 0.962 3.038 15 H -0.265 1.265 16 H -0.285 1.285 17 H -0.272 1.272 18 C 0.066 3.934 19 C 0.079 3.921 20 N -0.548 5.548 21 C 0.015 3.985 22 C 0.064 3.936 23 O -0.401 6.401 24 C 0.068 3.932 25 C 0.018 3.982 26 C -0.164 4.164 27 C -0.132 4.132 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.134 0.866 31 H 0.116 0.884 32 H 0.141 0.859 33 H 0.048 0.952 34 H 0.014 0.986 35 H 0.011 0.989 36 H -0.053 1.053 37 H 0.263 0.737 38 H 0.009 0.991 39 H 0.087 0.913 40 H 0.050 0.950 41 H 0.042 0.958 42 H 0.044 0.956 43 H 0.092 0.908 44 H 0.058 0.942 45 H 0.121 0.879 46 H 0.058 0.942 47 H 0.117 0.883 48 H 0.081 0.919 49 H 0.040 0.960 50 H 0.073 0.927 51 H 0.111 0.889 52 H 0.121 0.879 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.470 -20.609 7.556 21.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.301 3.699 4 O -0.418 6.418 5 C -0.107 4.107 6 C -0.118 4.118 7 C -0.016 4.016 8 N -0.248 5.248 9 C 0.085 3.915 10 C -0.551 4.551 11 H 0.081 0.919 12 C -0.195 4.195 13 N -0.576 5.576 14 Si 0.787 3.213 15 H -0.190 1.190 16 H -0.210 1.210 17 H -0.197 1.197 18 C -0.062 4.062 19 C -0.049 4.049 20 N -0.274 5.274 21 C -0.112 4.112 22 C -0.013 4.013 23 O -0.320 6.320 24 C -0.008 4.008 25 C -0.111 4.111 26 C -0.202 4.202 27 C -0.169 4.169 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.152 0.848 31 H 0.134 0.866 32 H 0.159 0.841 33 H 0.067 0.933 34 H 0.033 0.967 35 H 0.029 0.971 36 H -0.035 1.035 37 H 0.071 0.929 38 H 0.028 0.972 39 H 0.105 0.895 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.110 0.890 44 H 0.076 0.924 45 H 0.139 0.861 46 H 0.077 0.923 47 H 0.135 0.865 48 H 0.099 0.901 49 H 0.059 0.941 50 H 0.092 0.908 51 H 0.129 0.871 52 H 0.139 0.861 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.558 -20.331 7.373 21.634 hybrid contribution -0.583 1.922 -0.194 2.018 sum -1.142 -18.409 7.179 19.792 Atomic orbital electron populations 1.23489 0.75296 1.05576 1.02109 1.86487 1.24584 1.32847 1.84107 1.24222 0.92795 0.81118 0.71716 1.90694 1.67929 1.37529 1.45657 1.21099 0.86398 0.95952 1.07250 1.20978 1.03024 0.93569 0.94195 1.21284 0.90815 0.98777 0.90760 1.61980 1.47987 1.01547 1.13329 1.19388 0.92178 0.88777 0.91175 1.21387 1.42477 0.94158 0.97076 0.91936 1.25843 0.95904 1.02337 0.95399 1.70085 1.49931 1.28364 1.09226 0.85541 0.79252 0.78388 0.78085 1.19023 1.21017 1.19717 1.22077 0.95763 0.92240 0.96149 1.21790 0.96801 0.90112 0.96163 1.62140 1.40982 1.02219 1.22071 1.22902 1.02184 0.91313 0.94838 1.22800 0.88726 0.96754 0.92971 1.87937 1.49840 1.44600 1.49610 1.22721 1.02845 0.84547 0.90729 1.22802 0.91517 0.99739 0.96994 1.23020 1.02347 0.99765 0.95022 1.22878 0.89517 1.03353 1.01142 0.92240 0.92752 0.84789 0.86602 0.84132 0.93346 0.96743 0.97073 1.03492 0.92868 0.97236 0.89467 0.93185 0.93942 0.93750 0.88954 0.92405 0.86090 0.92325 0.86525 0.90070 0.94139 0.90833 0.87065 0.86133 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.65 113.37 1.21 1.69 16 2 O -0.36 -7.89 10.56 -51.37 -0.54 -8.43 16 3 C 0.46 11.98 7.50 71.23 0.53 12.51 16 4 O -0.53 -17.90 14.57 21.95 0.32 -17.58 16 5 C -0.07 -1.55 5.51 29.85 0.16 -1.39 16 6 C -0.12 -3.46 1.11 -52.18 -0.06 -3.52 16 7 C 0.11 4.47 4.43 86.30 0.38 4.86 16 8 N -0.52 -22.08 4.03 -900.81 -3.63 -25.71 16 9 C 0.21 11.35 4.51 85.56 0.39 11.73 16 10 C -0.51 -29.11 8.38 25.60 0.21 -28.90 16 11 H 0.06 3.47 7.66 -2.91 -0.02 3.45 16 12 C 0.00 0.17 5.46 84.65 0.46 0.63 16 13 N -0.94 -57.13 13.29 21.45 0.28 -56.84 16 14 Si 0.96 44.98 29.54 68.60 2.03 47.00 16 15 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 16 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 17 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 18 C 0.07 2.34 4.71 86.30 0.41 2.74 16 19 C 0.08 2.65 5.08 86.30 0.44 3.09 16 20 N -0.55 -15.10 4.73 -895.22 -4.23 -19.33 16 21 C 0.02 0.34 5.44 86.31 0.47 0.81 16 22 C 0.06 1.21 7.01 72.01 0.50 1.71 16 23 O -0.40 -8.97 10.83 -148.98 -1.61 -10.59 16 24 C 0.07 1.40 7.01 72.01 0.50 1.91 16 25 C 0.02 0.43 5.64 86.31 0.49 0.92 16 26 C -0.16 -4.59 9.82 30.59 0.30 -4.29 16 27 C -0.13 -3.62 9.69 30.60 0.30 -3.32 16 28 H 0.06 1.06 7.98 -2.39 -0.02 1.04 16 29 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.12 2.33 5.56 -2.39 -0.01 2.32 16 32 H 0.14 2.09 8.10 -2.38 -0.02 2.07 16 33 H 0.05 2.28 6.72 -2.39 -0.02 2.27 16 34 H 0.01 0.60 6.58 -2.38 -0.02 0.59 16 35 H 0.01 0.65 6.58 -2.39 -0.02 0.63 16 36 H -0.05 -3.17 8.05 -2.38 -0.02 -3.19 16 37 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 38 H 0.01 0.37 7.99 -2.39 -0.02 0.36 16 39 H 0.09 2.53 3.31 -2.39 -0.01 2.53 16 40 H 0.05 1.99 6.69 -2.39 -0.02 1.97 16 41 H 0.04 1.40 8.12 -2.39 -0.02 1.38 16 42 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.09 1.84 6.38 -2.39 -0.02 1.82 16 44 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.08 2.05 8.09 -2.38 -0.02 2.03 16 49 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.07 2.39 8.03 -2.39 -0.02 2.37 16 51 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 52 H 0.12 2.44 8.14 -2.38 -0.02 2.42 16 53 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -72.12 414.51 0.20 -71.93 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.88 Total: 18.38 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 6.70 Total: 1.18 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -7.57 Total: -101.88 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -1.84 Total: -36.60 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -72.12 0.20 -71.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440774753.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.710 kcal (2) G-P(sol) polarization free energy of solvation -72.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds