Wall clock time and date at job start Sat Apr 11 2020 06:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45205 * 109.46929 * 2 1 4 4 C 1.34227 * 116.99538 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00739 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99798 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.47396 * 60.00078 * 6 4 3 8 8 C 1.52999 * 109.47157 * 300.00268 * 6 4 3 9 9 C 1.53003 * 109.47314 * 179.97438 * 8 6 4 10 10 C 1.52992 * 109.47336 * 59.99804 * 9 8 6 11 11 C 1.52999 * 109.47079 * 300.00340 * 10 9 8 12 12 C 1.52997 * 109.47326 * 59.99950 * 11 10 9 13 13 H 1.09004 * 109.47826 * 180.02562 * 12 11 10 14 14 N 1.46901 * 109.47289 * 59.99630 * 12 11 10 15 15 C 1.46906 * 110.99675 * 110.11842 * 14 12 11 16 16 H 1.09004 * 109.47029 * 32.21771 * 15 14 12 17 17 C 1.52995 * 109.47044 * 272.21384 * 15 14 12 18 18 C 1.50707 * 109.46935 * 152.21205 * 15 14 12 19 19 O 1.21280 * 120.00026 * 0.02562 * 18 15 14 20 20 N 1.34766 * 119.99958 * 179.97438 * 18 15 14 21 21 C 1.46504 * 120.00405 * 0.02562 * 20 18 15 22 22 C 1.46506 * 119.99975 * 180.02562 * 20 18 15 23 23 C 1.50700 * 109.47341 * 270.00570 * 22 20 18 24 24 H 1.08008 * 119.99908 * 359.97438 * 23 22 20 25 25 C 1.37867 * 120.00206 * 180.02562 * 23 22 20 26 26 N 1.31515 * 120.00345 * 359.97438 * 25 23 22 27 27 Si 1.86807 * 120.00401 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.46681 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47359 * 119.99490 * 27 25 23 30 30 H 1.48498 * 109.47164 * 239.99964 * 27 25 23 31 31 H 1.09003 * 109.47101 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46973 * 299.99828 * 1 2 3 33 33 H 1.08991 * 109.47669 * 59.99958 * 1 2 3 34 34 H 1.09001 * 109.47300 * 239.99796 * 2 1 3 35 35 H 1.09001 * 109.47154 * 119.99466 * 2 1 3 36 36 H 1.08998 * 109.47519 * 300.00111 * 8 6 4 37 37 H 1.09004 * 109.47537 * 60.00118 * 8 6 4 38 38 H 1.09003 * 109.47490 * 180.02562 * 9 8 6 39 39 H 1.09006 * 109.46940 * 299.99663 * 9 8 6 40 40 H 1.09006 * 109.47221 * 60.00031 * 10 9 8 41 41 H 1.08998 * 109.47523 * 180.02562 * 10 9 8 42 42 H 1.08998 * 109.47519 * 299.99468 * 11 10 9 43 43 H 1.09004 * 109.47537 * 179.97438 * 11 10 9 44 44 H 1.00895 * 111.00297 * 346.16908 * 14 12 11 45 45 H 1.08997 * 109.47255 * 290.92877 * 17 15 14 46 46 H 1.09000 * 109.47217 * 50.93451 * 17 15 14 47 47 H 1.09007 * 109.46932 * 170.93655 * 17 15 14 48 48 H 1.08996 * 109.46595 * 269.99830 * 21 20 18 49 49 H 1.09005 * 109.46845 * 29.99268 * 21 20 18 50 50 H 1.08993 * 109.47351 * 149.99074 * 21 20 18 51 51 H 1.08991 * 109.47158 * 30.00598 * 22 20 18 52 52 H 1.09000 * 109.46691 * 150.00800 * 22 20 18 53 53 H 0.96994 * 120.00566 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5843 3.4701 0.8895 8 6 3.4497 3.6836 -1.2499 9 6 4.0340 5.0977 -1.2501 10 6 5.5618 5.0183 -1.2491 11 6 6.0328 4.2720 0.0008 12 6 5.4486 2.8580 0.0010 13 1 5.7838 2.3264 0.8917 14 7 5.9024 2.1405 -1.1978 15 6 6.8528 1.0768 -0.8465 16 1 6.6007 0.6738 0.1345 17 6 8.2708 1.6504 -0.8133 18 6 6.7794 -0.0223 -1.8750 19 8 6.0114 0.0715 -2.8090 20 7 7.5679 -1.1089 -1.7575 21 6 8.4960 -1.2220 -0.6297 22 6 7.4969 -2.1771 -2.7577 23 6 6.4652 -3.1917 -2.3369 24 1 5.9174 -3.0548 -1.4161 25 6 6.2213 -4.2951 -3.1265 26 7 6.8887 -4.4622 -4.2474 27 14 4.9418 -5.5525 -2.6052 28 1 4.3356 -5.1360 -1.3151 29 1 3.8841 -5.6422 -3.6436 30 1 5.5892 -6.8790 -2.4421 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.7860 3.1510 -2.1394 37 1 2.3611 3.7408 -1.2504 38 1 3.6981 5.6295 -2.1404 39 1 3.6972 5.6302 -0.3606 40 1 5.8986 4.4858 -2.1386 41 1 5.9781 6.0256 -1.2488 42 1 5.6962 4.8044 0.8903 43 1 7.1214 4.2150 0.0014 44 1 6.3042 2.7769 -1.8697 45 1 8.5832 1.9058 -1.8258 46 1 8.2861 2.5455 -0.1915 47 1 8.9533 0.9083 -0.3988 48 1 9.4548 -0.7811 -0.9026 49 1 8.0862 -0.6955 0.2323 50 1 8.6375 -2.2734 -0.3796 51 1 7.2176 -1.7536 -3.7224 52 1 8.4698 -2.6615 -2.8415 53 1 6.7168 -5.2383 -4.8031 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451591629.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:35 Heat of formation + Delta-G solvation = -148.423717 kcal Electronic energy + Delta-G solvation = -32491.059414 eV Core-core repulsion = 28361.661020 eV Total energy + Delta-G solvation = -4129.398394 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.78989 -40.75412 -39.57212 -37.41488 -36.51809 -36.06700 -34.68797 -32.94938 -32.00026 -31.76377 -29.85108 -28.69731 -27.47237 -25.71941 -25.32016 -23.76222 -23.45719 -23.29901 -21.77337 -20.08082 -19.98206 -18.71295 -18.52702 -18.02359 -17.48866 -17.36682 -17.10229 -16.50560 -16.30027 -15.95556 -15.69820 -15.23175 -14.98690 -14.80926 -14.60893 -14.43564 -14.24710 -14.16000 -13.94694 -13.60830 -13.54768 -13.42144 -13.29981 -13.20857 -12.99639 -12.90265 -12.81628 -12.77656 -12.53556 -12.51634 -12.36643 -12.33302 -12.16677 -12.10491 -11.69695 -11.63656 -11.50479 -11.27200 -11.13448 -10.90526 -10.67767 -10.33546 -9.36347 -9.14718 -8.24745 -6.39405 1.29300 1.32272 1.41995 1.44734 1.81970 2.02202 2.31148 2.43559 3.03057 3.26058 3.64906 3.74166 3.80897 3.91458 3.94635 4.06906 4.12986 4.16991 4.18983 4.29082 4.31285 4.33750 4.39188 4.46862 4.53498 4.61138 4.63356 4.74591 4.76773 4.83062 4.86308 4.88306 4.93478 4.97403 5.01754 5.09702 5.11154 5.21036 5.21743 5.24789 5.30578 5.35360 5.43175 5.55697 5.60024 5.63049 5.86839 6.06467 6.12924 6.57410 6.69315 6.91788 6.96316 7.27306 7.66247 8.82008 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009842 B = 0.004259 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.225465 B = 6573.397889 C = 8642.494251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.057 3.943 3 O -0.365 6.365 4 C 0.453 3.547 5 O -0.521 6.521 6 C -0.058 4.058 7 H 0.135 0.865 8 C -0.104 4.104 9 C -0.107 4.107 10 C -0.123 4.123 11 C -0.129 4.129 12 C 0.102 3.898 13 H 0.074 0.926 14 N -0.672 5.672 15 C 0.097 3.903 16 H 0.098 0.902 17 C -0.179 4.179 18 C 0.504 3.496 19 O -0.585 6.585 20 N -0.617 5.617 21 C 0.081 3.919 22 C 0.264 3.736 23 C -0.539 4.539 24 H 0.042 0.958 25 C 0.008 3.992 26 N -0.928 5.928 27 Si 0.965 3.035 28 H -0.274 1.274 29 H -0.279 1.279 30 H -0.262 1.262 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.036 0.964 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.049 0.951 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.346 0.654 45 H 0.051 0.949 46 H 0.094 0.906 47 H 0.086 0.914 48 H 0.076 0.924 49 H 0.084 0.916 50 H 0.060 0.940 51 H -0.007 1.007 52 H 0.023 0.977 53 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.069 22.281 15.148 27.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.017 4.017 3 O -0.282 6.282 4 C 0.297 3.703 5 O -0.408 6.408 6 C -0.077 4.077 7 H 0.153 0.847 8 C -0.142 4.142 9 C -0.144 4.144 10 C -0.160 4.160 11 C -0.167 4.167 12 C -0.008 4.008 13 H 0.092 0.908 14 N -0.305 5.305 15 C -0.016 4.016 16 H 0.115 0.885 17 C -0.237 4.237 18 C 0.292 3.708 19 O -0.464 6.464 20 N -0.350 5.350 21 C -0.061 4.061 22 C 0.142 3.858 23 C -0.577 4.577 24 H 0.060 0.940 25 C -0.190 4.190 26 N -0.568 5.568 27 Si 0.789 3.211 28 H -0.198 1.198 29 H -0.205 1.205 30 H -0.187 1.187 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.067 0.933 41 H 0.104 0.896 42 H 0.115 0.885 43 H 0.097 0.903 44 H 0.169 0.831 45 H 0.070 0.930 46 H 0.113 0.887 47 H 0.105 0.895 48 H 0.095 0.905 49 H 0.103 0.897 50 H 0.079 0.921 51 H 0.011 0.989 52 H 0.041 0.959 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.770 21.460 14.487 26.328 hybrid contribution 0.149 -1.310 -0.371 1.370 sum -4.621 20.150 14.116 25.033 Atomic orbital electron populations 1.21769 0.89808 1.04035 1.04012 1.23051 0.97425 0.80252 1.01001 1.86457 1.25170 1.32199 1.84420 1.24506 0.80165 0.93960 0.71708 1.90712 1.60812 1.44440 1.44843 1.21317 0.95947 0.87675 1.02808 0.84740 1.21402 1.00666 0.96601 0.95555 1.21478 0.95247 0.94368 1.03318 1.21570 0.95985 1.00990 0.97489 1.22083 1.01027 0.93412 1.00155 1.21528 0.92022 0.94956 0.92272 0.90814 1.59778 1.42798 1.14476 1.13418 1.21289 0.93164 0.90958 0.96184 0.88470 1.22685 0.94849 1.03231 1.02977 1.21410 0.78938 0.83452 0.86958 1.90575 1.39264 1.80266 1.36285 1.48145 1.40143 1.19661 1.27050 1.22006 0.92911 1.02868 0.88328 1.18654 0.95701 0.84424 0.87020 1.21689 1.21962 1.06943 1.07134 0.93978 1.25828 0.98383 1.00098 0.94719 1.70049 1.42852 1.30094 1.13759 0.85414 0.78755 0.78800 0.78119 1.19820 1.20455 1.18711 0.89082 0.89994 0.91402 0.94505 0.91897 0.93542 0.91123 0.91215 0.89602 0.93272 0.89646 0.88500 0.90266 0.83140 0.93018 0.88725 0.89528 0.90543 0.89725 0.92075 0.98865 0.95905 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 10.29 71.98 0.74 -2.06 16 2 C 0.06 1.67 6.19 71.98 0.45 2.12 16 3 O -0.36 -10.89 10.12 -51.38 -0.52 -11.41 16 4 C 0.45 14.43 7.09 71.24 0.51 14.93 16 5 O -0.52 -21.33 13.78 21.98 0.30 -21.03 16 6 C -0.06 -1.24 2.45 -11.54 -0.03 -1.27 16 7 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 8 C -0.10 -2.16 4.98 30.60 0.15 -2.01 16 9 C -0.11 -1.42 5.92 30.59 0.18 -1.23 16 10 C -0.12 -1.57 5.73 30.59 0.18 -1.40 16 11 C -0.13 -1.56 5.46 30.59 0.17 -1.39 16 12 C 0.10 2.11 1.87 44.91 0.08 2.19 16 13 H 0.07 1.56 7.08 -2.38 -0.02 1.54 16 14 N -0.67 -19.80 3.88 -473.28 -1.84 -21.64 16 15 C 0.10 3.16 1.36 44.17 0.06 3.22 16 16 H 0.10 3.20 6.05 -2.38 -0.01 3.18 16 17 C -0.18 -4.02 8.72 71.98 0.63 -3.39 16 18 C 0.50 23.76 7.13 87.66 0.62 24.38 16 19 O -0.58 -34.18 16.01 -3.03 -0.05 -34.23 16 20 N -0.62 -29.22 2.86 -851.13 -2.43 -31.65 16 21 C 0.08 2.74 8.79 127.77 1.12 3.86 16 22 C 0.26 15.52 5.16 85.63 0.44 15.96 16 23 C -0.54 -33.92 9.39 25.60 0.24 -33.68 16 24 H 0.04 2.71 7.81 -2.91 -0.02 2.69 16 25 C 0.01 0.52 5.46 84.65 0.46 0.98 16 26 N -0.93 -58.99 13.29 21.44 0.28 -58.70 16 27 Si 0.96 48.05 29.54 68.60 2.03 50.08 16 28 H -0.27 -13.50 7.11 99.48 0.71 -12.79 16 29 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 30 H -0.26 -12.10 7.11 99.48 0.71 -11.40 16 31 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 32 H 0.08 1.34 8.14 -2.38 -0.02 1.33 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.04 1.33 8.13 -2.39 -0.02 1.31 16 35 H 0.06 1.84 8.13 -2.39 -0.02 1.82 16 36 H 0.05 1.32 7.60 -2.39 -0.02 1.31 16 37 H 0.07 1.41 8.11 -2.39 -0.02 1.39 16 38 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.09 0.77 8.14 -2.38 -0.02 0.76 16 40 H 0.05 0.84 6.36 -2.38 -0.02 0.83 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.08 0.84 6.80 -2.39 -0.02 0.83 16 44 H 0.35 9.55 5.94 -89.70 -0.53 9.02 16 45 H 0.05 1.27 8.12 -2.39 -0.02 1.26 16 46 H 0.09 1.46 6.71 -2.39 -0.02 1.44 16 47 H 0.09 1.77 4.84 -2.38 -0.01 1.76 16 48 H 0.08 2.07 7.16 -2.39 -0.02 2.06 16 49 H 0.08 2.35 5.90 -2.38 -0.01 2.34 16 50 H 0.06 2.16 8.07 -2.39 -0.02 2.14 16 51 H -0.01 -0.46 7.42 -2.39 -0.02 -0.48 16 52 H 0.02 1.34 8.07 -2.39 -0.02 1.32 16 53 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -88.60 408.55 4.14 -84.46 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.37 Total: 22.92 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: 6.00 Total: 21.21 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -3.98 Total: -112.00 kcal Atomic # 8 Polarization: -66.40 SS G_CDS: -0.27 Total: -66.67 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.08 kcal Total: -88.60 4.14 -84.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451591629.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.964 kcal (2) G-P(sol) polarization free energy of solvation -88.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds