Wall clock time and date at job start Sat Apr 11 2020 06:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45206 * 109.47129 * 2 1 4 4 C 1.34232 * 116.99878 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00049 * 0.02562 * 4 3 2 6 6 C 1.50695 * 119.99727 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.47646 * 60.00176 * 6 4 3 8 8 C 1.53004 * 109.47319 * 299.99634 * 6 4 3 9 9 C 1.52997 * 109.47257 * 179.97438 * 8 6 4 10 10 C 1.52996 * 109.46880 * 60.00517 * 9 8 6 11 11 C 1.52997 * 109.47342 * 299.99761 * 10 9 8 12 12 C 1.52997 * 109.47264 * 60.00079 * 11 10 9 13 13 H 1.08995 * 109.47593 * 180.02562 * 12 11 10 14 14 N 1.46904 * 109.47133 * 60.00034 * 12 11 10 15 15 C 1.46892 * 110.99949 * 85.00336 * 14 12 11 16 16 C 1.53003 * 109.47317 * 180.02562 * 15 14 12 17 17 C 1.50704 * 109.47199 * 180.02562 * 16 15 14 18 18 O 1.21283 * 119.99857 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99805 * 180.02562 * 17 16 15 20 20 C 1.46498 * 119.99751 * 359.97438 * 19 17 16 21 21 C 1.46496 * 119.99842 * 179.97438 * 19 17 16 22 22 C 1.50698 * 109.47250 * 89.99803 * 21 19 17 23 23 H 1.08001 * 120.00210 * 359.97438 * 22 21 19 24 24 C 1.37880 * 119.99906 * 180.02562 * 22 21 19 25 25 N 1.31517 * 119.99850 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00147 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.46740 * 60.00141 * 26 24 22 28 28 H 1.48497 * 109.47370 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47428 * 300.00552 * 26 24 22 30 30 H 1.09004 * 109.47059 * 59.99488 * 1 2 3 31 31 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46930 * 299.99887 * 1 2 3 33 33 H 1.09004 * 109.46930 * 240.00113 * 2 1 3 34 34 H 1.09000 * 109.47312 * 120.00057 * 2 1 3 35 35 H 1.09001 * 109.47204 * 300.00812 * 8 6 4 36 36 H 1.09008 * 109.46661 * 60.00193 * 8 6 4 37 37 H 1.08997 * 109.47186 * 300.00540 * 9 8 6 38 38 H 1.09003 * 109.47116 * 180.02562 * 9 8 6 39 39 H 1.09004 * 109.47146 * 179.97438 * 10 9 8 40 40 H 1.09002 * 109.47638 * 59.99886 * 10 9 8 41 41 H 1.08997 * 109.47193 * 300.00264 * 11 10 9 42 42 H 1.08995 * 109.47425 * 179.97438 * 11 10 9 43 43 H 1.00896 * 110.99674 * 321.04922 * 14 12 11 44 44 H 1.09002 * 109.47107 * 299.99946 * 15 14 12 45 45 H 1.09000 * 109.47438 * 60.00057 * 15 14 12 46 46 H 1.09002 * 109.46755 * 299.99877 * 16 15 14 47 47 H 1.09000 * 109.47053 * 59.99536 * 16 15 14 48 48 H 1.08994 * 109.47415 * 90.00630 * 20 19 17 49 49 H 1.09006 * 109.46731 * 210.00499 * 20 19 17 50 50 H 1.08992 * 109.47640 * 330.00026 * 20 19 17 51 51 H 1.08998 * 109.46848 * 209.99886 * 21 19 17 52 52 H 1.09002 * 109.46952 * 329.99768 * 21 19 17 53 53 H 0.96998 * 119.99787 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5853 3.4691 0.8905 8 6 3.4487 3.6851 -1.2486 9 6 4.0329 5.0991 -1.2477 10 6 5.5608 5.0196 -1.2482 11 6 6.0330 4.2719 0.0003 12 6 5.4488 2.8579 -0.0005 13 1 5.7848 2.3254 0.8892 14 7 5.9014 2.1417 -1.2006 15 6 7.2187 1.5293 -0.9826 16 6 7.6560 0.7948 -2.2516 17 6 9.0071 0.1660 -2.0277 18 8 9.5656 0.2933 -0.9587 19 7 9.5953 -0.5369 -3.0159 20 6 8.9209 -0.6901 -4.3073 21 6 10.9090 -1.1477 -2.7985 22 6 10.7310 -2.5420 -2.2552 23 1 9.7386 -2.9339 -2.0880 24 6 11.8352 -3.3171 -1.9704 25 7 13.0438 -2.8393 -2.1725 26 14 11.6147 -5.0451 -1.2962 27 1 10.8447 -5.8613 -2.2689 28 1 12.9464 -5.6642 -1.0760 29 1 10.8776 -4.9838 -0.0085 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.7841 3.1534 -2.1391 36 1 2.3601 3.7421 -1.2480 37 1 3.6970 5.6305 -0.3573 38 1 3.6962 5.6320 -2.1371 39 1 5.9771 6.0270 -1.2480 40 1 5.8968 4.4882 -2.1387 41 1 5.6971 4.8033 0.8908 42 1 7.1215 4.2149 -0.0003 43 1 5.9153 2.7533 -2.0029 44 1 7.9455 2.3059 -0.7441 45 1 7.1582 0.8220 -0.1555 46 1 6.9293 0.0182 -2.4905 47 1 7.7165 1.5024 -3.0784 48 1 9.2082 0.1288 -4.9667 49 1 9.2113 -1.6389 -4.7586 50 1 7.8414 -0.6744 -4.1577 51 1 11.4498 -1.1924 -3.7438 52 1 11.4744 -0.5489 -2.0844 53 1 13.8206 -3.3847 -1.9725 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451600629.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:40 Heat of formation + Delta-G solvation = -161.223538 kcal Electronic energy + Delta-G solvation = -30764.790868 eV Core-core repulsion = 26634.837432 eV Total energy + Delta-G solvation = -4129.953436 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.75061 -40.70990 -39.81345 -37.39892 -36.69204 -35.82921 -34.74576 -32.92542 -32.28609 -31.79892 -30.17073 -28.93083 -27.28496 -25.54011 -25.12934 -23.75687 -23.30461 -23.26561 -21.71546 -20.16702 -19.72734 -18.73003 -18.51880 -17.89831 -17.63102 -17.45369 -17.08969 -16.91645 -16.40121 -16.14157 -15.88128 -15.47652 -15.02261 -14.84795 -14.73505 -14.45481 -14.22459 -14.07666 -13.88250 -13.65987 -13.57629 -13.46489 -13.34740 -13.23676 -13.03199 -12.99060 -12.78045 -12.72418 -12.64824 -12.45968 -12.40980 -12.21905 -12.20322 -12.12351 -11.74731 -11.66845 -11.44300 -11.28907 -11.10743 -10.95048 -10.67053 -10.62329 -9.44034 -9.30073 -8.25175 -6.40267 1.33295 1.38115 1.40604 1.45484 1.79789 1.82242 2.28341 2.41511 3.03679 3.16026 3.63678 3.70075 3.79840 3.90577 4.02584 4.04620 4.10544 4.14214 4.20068 4.22743 4.27645 4.39081 4.39838 4.42026 4.52403 4.59277 4.61939 4.70284 4.73900 4.86070 4.88121 4.94449 4.94990 4.96499 4.98871 5.08680 5.12024 5.16978 5.18889 5.20260 5.23416 5.32991 5.39572 5.53418 5.53737 5.61808 5.82372 5.99700 6.03864 6.55638 6.66607 6.77243 6.96686 7.25322 7.46727 8.81709 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011823 B = 0.002553 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.686523 B =10965.531693 C =12485.582352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.055 3.945 3 O -0.364 6.364 4 C 0.461 3.539 5 O -0.519 6.519 6 C -0.060 4.060 7 H 0.127 0.873 8 C -0.104 4.104 9 C -0.110 4.110 10 C -0.122 4.122 11 C -0.145 4.145 12 C 0.101 3.899 13 H 0.059 0.941 14 N -0.671 5.671 15 C 0.096 3.904 16 C -0.115 4.115 17 C 0.494 3.506 18 O -0.602 6.602 19 N -0.612 5.612 20 C 0.079 3.921 21 C 0.259 3.741 22 C -0.546 4.546 23 H 0.049 0.951 24 C 0.008 3.992 25 N -0.928 5.928 26 Si 0.967 3.033 27 H -0.259 1.259 28 H -0.275 1.275 29 H -0.280 1.280 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.086 0.914 42 H 0.054 0.946 43 H 0.347 0.653 44 H 0.026 0.974 45 H 0.043 0.957 46 H 0.105 0.895 47 H 0.120 0.880 48 H 0.074 0.926 49 H 0.064 0.936 50 H 0.091 0.909 51 H 0.025 0.975 52 H -0.003 1.003 53 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.061 17.488 -1.000 33.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.019 4.019 3 O -0.281 6.281 4 C 0.304 3.696 5 O -0.406 6.406 6 C -0.079 4.079 7 H 0.145 0.855 8 C -0.142 4.142 9 C -0.147 4.147 10 C -0.160 4.160 11 C -0.184 4.184 12 C -0.010 4.010 13 H 0.077 0.923 14 N -0.304 5.304 15 C -0.034 4.034 16 C -0.155 4.155 17 C 0.283 3.717 18 O -0.484 6.484 19 N -0.343 5.343 20 C -0.063 4.063 21 C 0.137 3.863 22 C -0.584 4.584 23 H 0.068 0.932 24 C -0.191 4.191 25 N -0.567 5.567 26 Si 0.791 3.209 27 H -0.184 1.184 28 H -0.199 1.199 29 H -0.206 1.206 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.073 0.927 43 H 0.169 0.831 44 H 0.045 0.955 45 H 0.061 0.939 46 H 0.123 0.877 47 H 0.138 0.862 48 H 0.093 0.907 49 H 0.083 0.917 50 H 0.110 0.890 51 H 0.043 0.957 52 H 0.015 0.985 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -27.725 16.594 -0.347 32.314 hybrid contribution 1.420 -0.824 0.607 1.750 sum -26.305 15.770 0.260 30.671 Atomic orbital electron populations 1.21790 0.90322 1.04073 1.03818 1.23140 0.97048 0.79945 1.01776 1.86488 1.24602 1.32766 1.84258 1.24131 0.80251 0.93357 0.71847 1.90722 1.60914 1.44099 1.44902 1.21186 0.94269 0.88807 1.03636 0.85494 1.21485 1.01596 0.95928 0.95154 1.21511 0.94197 0.95310 1.03675 1.21579 0.96760 1.00722 0.96897 1.22145 1.00212 0.95236 1.00759 1.21336 0.92716 0.93499 0.93413 0.92285 1.60445 1.26400 1.37442 1.06162 1.21294 0.89062 0.96802 0.96261 1.21496 0.91872 1.01603 1.00543 1.21366 0.88444 0.78649 0.83202 1.90626 1.67308 1.63084 1.27343 1.48209 1.20598 1.50951 1.14558 1.21932 0.98195 1.02613 0.83574 1.18745 0.80275 0.91746 0.95503 1.21678 0.92757 0.99968 1.44041 0.93229 1.25869 0.94624 1.03128 0.95525 1.70041 0.98425 1.39033 1.49214 0.85474 0.77707 0.78847 0.78826 1.18370 1.19932 1.20586 0.90975 0.88857 0.91100 0.92178 0.92386 0.91530 0.89767 0.90443 0.89938 0.90438 0.92068 0.89572 0.92744 0.83114 0.95539 0.93880 0.87696 0.86194 0.90748 0.91688 0.89020 0.95674 0.98517 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 10.29 71.98 0.74 -0.80 16 2 C 0.05 0.98 6.19 71.98 0.45 1.43 16 3 O -0.36 -7.30 10.12 -51.44 -0.52 -7.82 16 4 C 0.46 10.69 7.09 71.23 0.51 11.19 16 5 O -0.52 -16.55 14.96 21.97 0.33 -16.22 16 6 C -0.06 -0.97 2.45 -11.54 -0.03 -0.99 16 7 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 8 C -0.10 -1.20 4.90 30.59 0.15 -1.05 16 9 C -0.11 -0.88 5.92 30.59 0.18 -0.70 16 10 C -0.12 -1.32 5.67 30.59 0.17 -1.15 16 11 C -0.14 -2.18 5.52 30.59 0.17 -2.01 16 12 C 0.10 2.04 1.85 44.92 0.08 2.12 16 13 H 0.06 1.52 7.76 -2.39 -0.02 1.51 16 14 N -0.67 -15.60 4.57 -491.57 -2.24 -17.84 16 15 C 0.10 2.97 4.77 86.31 0.41 3.38 16 16 C -0.12 -3.53 4.51 29.85 0.13 -3.40 16 17 C 0.49 22.01 7.67 87.66 0.67 22.68 16 18 O -0.60 -33.29 15.56 -3.04 -0.05 -33.34 16 19 N -0.61 -27.54 2.86 -851.16 -2.43 -29.97 16 20 C 0.08 2.48 10.24 127.77 1.31 3.79 16 21 C 0.26 14.68 5.16 85.63 0.44 15.12 16 22 C -0.55 -33.09 9.39 25.60 0.24 -32.85 16 23 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 24 C 0.01 0.45 5.46 84.65 0.46 0.92 16 25 N -0.93 -57.83 13.29 21.45 0.28 -57.54 16 26 Si 0.97 46.73 29.54 68.60 2.03 48.75 16 27 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 28 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 29 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.06 1.18 8.13 -2.38 -0.02 1.16 16 34 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 35 H 0.07 0.92 7.21 -2.39 -0.02 0.90 16 36 H 0.08 0.85 8.11 -2.38 -0.02 0.83 16 37 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.06 0.71 6.26 -2.39 -0.01 0.70 16 41 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.05 1.02 7.45 -2.39 -0.02 1.00 16 43 H 0.35 6.42 5.56 -89.70 -0.50 5.93 16 44 H 0.03 0.86 7.39 -2.39 -0.02 0.84 16 45 H 0.04 1.67 8.01 -2.39 -0.02 1.65 16 46 H 0.10 3.08 7.40 -2.39 -0.02 3.06 16 47 H 0.12 2.74 8.11 -2.39 -0.02 2.73 16 48 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.06 2.15 8.07 -2.38 -0.02 2.14 16 50 H 0.09 2.28 6.44 -2.39 -0.02 2.27 16 51 H 0.03 1.43 8.07 -2.39 -0.02 1.41 16 52 H 0.00 -0.21 7.42 -2.39 -0.02 -0.23 16 53 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -83.17 418.24 3.87 -79.30 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.38 Total: 16.99 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: 6.09 Total: 17.69 kcal Atomic # 7 Polarization: -100.97 SS G_CDS: -4.39 Total: -105.36 kcal Atomic # 8 Polarization: -57.14 SS G_CDS: -0.24 Total: -57.38 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.75 kcal Total: -83.17 3.87 -79.30 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451600629.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.919 kcal (2) G-P(sol) polarization free energy of solvation -83.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds