Wall clock time and date at job start Sat Apr 11 2020 06:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47404 * 2 1 4 4 C 1.34636 * 117.00048 * 179.97438 * 3 2 1 5 5 O 1.21504 * 119.99869 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99965 * 179.97438 * 4 3 2 7 7 C 1.46928 * 120.62743 * 0.02562 * 6 4 3 8 8 C 1.53198 * 108.77438 * 126.37476 * 7 6 4 9 9 C 1.53045 * 109.33816 * 54.61564 * 8 7 6 10 10 C 1.53035 * 109.53857 * 298.68530 * 9 8 7 11 11 H 1.09002 * 109.49941 * 301.34660 * 10 9 8 12 12 C 1.50703 * 109.49555 * 181.28526 * 10 9 8 13 13 O 1.21278 * 119.99985 * 0.06082 * 12 10 9 14 14 N 1.34779 * 119.99944 * 180.02562 * 12 10 9 15 15 C 1.46499 * 119.99872 * 179.97438 * 14 12 10 16 16 C 1.52997 * 109.47012 * 180.02562 * 15 14 12 17 17 C 1.53006 * 109.47164 * 300.00256 * 16 15 14 18 18 C 1.52999 * 109.47592 * 59.99962 * 16 15 14 19 19 C 1.52997 * 109.47232 * 180.02562 * 16 15 14 20 20 C 1.50701 * 109.47212 * 179.97438 * 19 16 15 21 21 H 1.07998 * 120.00129 * 359.97438 * 20 19 16 22 22 C 1.37880 * 119.99861 * 180.02562 * 20 19 16 23 23 N 1.31511 * 120.00346 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99914 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.46938 * 59.99701 * 24 22 20 26 26 H 1.48494 * 109.46914 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.46872 * 299.99704 * 24 22 20 28 28 C 1.46921 * 120.63398 * 180.02562 * 6 4 3 29 29 H 1.08997 * 109.47640 * 300.00883 * 1 2 3 30 30 H 1.09003 * 109.46482 * 60.00140 * 1 2 3 31 31 H 1.08996 * 109.47477 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47211 * 239.99299 * 2 1 3 33 33 H 1.09004 * 109.46636 * 119.99331 * 2 1 3 34 34 H 1.09005 * 109.58907 * 246.15897 * 7 6 4 35 35 H 1.08997 * 109.59008 * 6.58608 * 7 6 4 36 36 H 1.08994 * 109.49925 * 174.58620 * 8 7 6 37 37 H 1.09004 * 109.49703 * 294.68599 * 8 7 6 38 38 H 1.08997 * 109.48227 * 178.64892 * 9 8 7 39 39 H 1.09003 * 109.42954 * 58.69392 * 9 8 7 40 40 H 0.97000 * 119.99708 * 0.02562 * 14 12 10 41 41 H 1.09001 * 109.46813 * 60.00258 * 15 14 12 42 42 H 1.09002 * 109.47133 * 299.99829 * 15 14 12 43 43 H 1.09001 * 109.46801 * 180.02562 * 17 16 15 44 44 H 1.09001 * 109.46998 * 299.99705 * 17 16 15 45 45 H 1.09000 * 109.47050 * 59.99996 * 17 16 15 46 46 H 1.09000 * 109.47160 * 300.00333 * 18 16 15 47 47 H 1.09002 * 109.46719 * 60.00054 * 18 16 15 48 48 H 1.08993 * 109.47839 * 179.97438 * 18 16 15 49 49 H 1.09002 * 109.47153 * 299.99992 * 19 16 15 50 50 H 1.09001 * 109.47289 * 60.00075 * 19 16 15 51 51 H 0.96993 * 120.00442 * 180.02562 * 23 22 20 52 52 H 1.09000 * 109.58950 * 113.83702 * 28 6 4 53 53 H 1.09006 * 109.69977 * 353.47833 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3488 1.5453 0.0005 5 8 4.0889 0.5816 0.0015 6 7 3.8640 2.7907 0.0000 7 6 2.9818 3.9657 -0.0005 8 6 3.3736 4.8770 1.1670 9 6 4.8644 5.2101 1.0717 10 6 5.6840 3.9213 1.1679 11 1 5.4640 3.4197 2.1103 12 6 7.1526 4.2534 1.1057 13 8 7.5093 5.4074 0.9964 14 7 8.0698 3.2680 1.1722 15 6 9.4974 3.5908 1.1112 16 6 10.3162 2.3019 1.2062 17 6 10.0084 1.5985 2.5297 18 6 9.9518 1.3791 0.0416 19 6 11.8073 2.6391 1.1431 20 6 12.6138 1.3695 1.2374 21 1 12.1130 0.4175 1.3331 22 6 13.9911 1.4236 1.2024 23 7 14.6010 2.5829 1.0863 24 14 14.9909 -0.1500 1.3199 25 1 14.6381 -1.0461 0.1896 26 1 16.4380 0.1773 1.2586 27 1 14.6911 -0.8321 2.6046 28 6 5.3183 2.9993 0.0001 29 1 -0.3634 0.5139 0.8898 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.0944 4.5068 -0.9401 35 1 1.9467 3.6455 0.1173 36 1 2.7915 5.7973 1.1214 37 1 3.1750 4.3666 2.1094 38 1 5.1405 5.8778 1.8878 39 1 5.0665 5.6988 0.1186 40 1 7.7845 2.3451 1.2598 41 1 9.7569 4.2486 1.9408 42 1 9.7168 4.0915 0.1681 43 1 10.5922 0.6805 2.5976 44 1 10.2681 2.2559 3.3595 45 1 8.9462 1.3584 2.5751 46 1 8.8896 1.1389 0.0869 47 1 10.1711 1.8801 -0.9013 48 1 10.5355 0.4610 0.1090 49 1 12.0269 3.1403 0.2005 50 1 12.0666 3.2963 1.9732 51 1 15.5698 2.6210 1.0613 52 1 5.6213 3.4616 -0.9394 53 1 5.8268 2.0422 0.1171 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495635295.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:52 Heat of formation + Delta-G solvation = -144.279550 kcal Electronic energy + Delta-G solvation = -30716.272352 eV Core-core repulsion = 26587.053662 eV Total energy + Delta-G solvation = -4129.218689 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.07632 -39.96458 -38.23230 -37.08154 -36.54040 -33.69172 -33.38510 -32.24500 -31.89347 -31.40024 -27.15763 -26.49266 -26.41802 -26.01352 -24.41902 -23.40475 -22.82725 -21.79415 -20.60447 -19.86870 -18.66513 -18.09640 -17.30199 -17.01336 -16.67111 -16.32239 -15.76164 -15.54443 -15.10510 -14.83713 -14.53108 -14.44158 -14.24832 -13.96674 -13.72648 -13.46344 -13.37642 -13.20482 -13.10545 -12.86944 -12.69412 -12.30306 -12.15927 -12.04559 -12.00352 -11.76844 -11.36857 -11.28298 -11.13494 -10.99187 -10.97155 -10.86511 -10.85936 -10.75435 -10.61517 -10.39157 -10.25424 -9.86330 -9.81935 -9.18817 -9.10201 -8.92079 -8.74984 -8.34540 -5.98716 -3.99940 1.72391 2.49407 2.74948 3.32860 3.33359 3.38493 3.40432 3.48868 4.34741 4.42400 4.46756 4.53632 4.56648 4.59115 4.61419 4.83510 4.89910 5.00442 5.06134 5.09955 5.25624 5.36504 5.36620 5.38983 5.42225 5.48648 5.52573 5.54043 5.60964 5.63427 5.76937 5.85508 5.99261 6.04009 6.04257 6.19328 6.24025 6.28651 6.40378 6.55740 6.65275 6.76428 6.96124 7.07949 7.09167 7.13828 7.64457 7.70126 7.77131 7.95393 7.99864 8.35643 8.42521 9.04581 9.63046 11.12638 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015323 B = 0.002301 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.913658 B =12165.705534 C =13664.622229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.081 3.919 3 O -0.370 6.370 4 C 0.651 3.349 5 O -0.568 6.568 6 N -0.592 5.592 7 C 0.110 3.890 8 C -0.135 4.135 9 C -0.100 4.100 10 C -0.124 4.124 11 H 0.101 0.899 12 C 0.515 3.485 13 O -0.540 6.540 14 N -0.719 5.719 15 C 0.127 3.873 16 C -0.073 4.073 17 C -0.128 4.128 18 C -0.128 4.128 19 C 0.037 3.963 20 C -0.511 4.511 21 H 0.059 0.941 22 C 0.056 3.944 23 N -0.895 5.895 24 Si 0.889 3.111 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.278 1.278 28 C 0.137 3.863 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.399 0.601 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.047 0.953 45 H 0.029 0.971 46 H 0.029 0.971 47 H 0.047 0.953 48 H 0.067 0.933 49 H 0.018 0.982 50 H 0.018 0.982 51 H 0.260 0.740 52 H 0.081 0.919 53 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.211 0.284 -1.386 30.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.006 3.994 3 O -0.285 6.285 4 C 0.405 3.595 5 O -0.457 6.457 6 N -0.333 5.333 7 C -0.013 4.013 8 C -0.174 4.174 9 C -0.138 4.138 10 C -0.146 4.146 11 H 0.119 0.881 12 C 0.299 3.701 13 O -0.417 6.417 14 N -0.371 5.371 15 C 0.005 3.995 16 C -0.073 4.073 17 C -0.185 4.185 18 C -0.185 4.185 19 C -0.001 4.001 20 C -0.549 4.549 21 H 0.077 0.923 22 C -0.145 4.145 23 N -0.534 5.534 24 Si 0.717 3.283 25 H -0.203 1.203 26 H -0.214 1.214 27 H -0.203 1.203 28 C 0.015 3.985 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.235 0.765 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.048 0.952 46 H 0.048 0.952 47 H 0.066 0.934 48 H 0.086 0.914 49 H 0.037 0.963 50 H 0.036 0.964 51 H 0.070 0.930 52 H 0.099 0.901 53 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -29.588 0.825 -1.483 29.636 hybrid contribution 0.641 -1.362 0.163 1.514 sum -28.947 -0.536 -1.320 28.982 Atomic orbital electron populations 1.21827 0.92511 1.03144 1.03478 1.22974 0.94787 0.78654 1.02961 1.86212 1.21989 1.33243 1.87014 1.17962 0.81257 0.83914 0.76358 1.91023 1.59745 1.39238 1.55694 1.46849 1.07080 1.03231 1.76133 1.21812 0.94253 0.85951 0.99245 1.21973 0.96818 0.99905 0.98663 1.21348 0.92839 0.95449 1.04204 1.21761 0.93090 0.98838 1.00926 0.88124 1.20250 0.87332 0.85695 0.76833 1.90705 1.81749 1.19864 1.49393 1.46295 1.07527 1.09830 1.73406 1.21653 0.77715 0.98374 1.01793 1.20908 0.98773 0.92506 0.95120 1.21769 0.98353 1.01574 0.96791 1.21764 0.98316 1.00674 0.97736 1.19082 0.86479 0.97074 0.97439 1.21148 0.90867 0.93069 1.49860 0.92306 1.25016 0.98112 0.95839 0.95568 1.69950 1.09020 1.23921 1.50514 0.86704 0.79148 0.83850 0.78555 1.20327 1.21423 1.20336 1.21574 0.77966 1.00933 0.98010 0.91477 0.91491 0.89942 0.91084 0.91073 0.90843 0.88853 0.89910 0.91291 0.90404 0.90667 0.76514 0.91754 0.91712 0.91400 0.93388 0.95235 0.95156 0.93356 0.91413 0.96347 0.96371 0.93002 0.90110 0.87939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 10.29 37.16 0.38 -0.30 16 2 C 0.08 0.60 6.19 37.16 0.23 0.83 16 3 O -0.37 -3.51 8.86 -40.31 -0.36 -3.86 16 4 C 0.65 7.49 8.43 54.06 0.46 7.95 16 5 O -0.57 -8.29 15.55 -19.27 -0.30 -8.59 16 6 N -0.59 -5.69 2.97 -178.54 -0.53 -6.22 16 7 C 0.11 0.75 6.45 -3.71 -0.02 0.73 16 8 C -0.14 -0.87 6.08 -26.61 -0.16 -1.04 16 9 C -0.10 -0.90 4.46 -26.69 -0.12 -1.02 16 10 C -0.12 -1.27 2.68 -91.64 -0.25 -1.51 16 11 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 12 C 0.51 7.19 7.16 -10.98 -0.08 7.11 16 13 O -0.54 -9.53 15.98 5.56 0.09 -9.44 16 14 N -0.72 -10.21 4.86 -60.29 -0.29 -10.51 16 15 C 0.13 2.23 4.56 -4.04 -0.02 2.21 16 16 C -0.07 -1.38 0.54 -154.51 -0.08 -1.47 16 17 C -0.13 -2.27 8.05 37.16 0.30 -1.97 16 18 C -0.13 -2.28 8.05 37.16 0.30 -1.98 16 19 C 0.04 0.90 4.04 -27.88 -0.11 0.79 16 20 C -0.51 -13.64 7.65 -34.44 -0.26 -13.90 16 21 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 22 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 23 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 24 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 C 0.14 1.38 5.57 -3.70 -0.02 1.36 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.57 6.93 -51.93 -0.36 0.21 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 39 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 40 H 0.40 5.04 5.71 -40.82 -0.23 4.81 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.07 1.30 6.61 -51.93 -0.34 0.96 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 46 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 47 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.07 1.31 6.62 -51.93 -0.34 0.96 16 49 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 52 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 53 H 0.10 1.14 6.61 -51.93 -0.34 0.80 16 LS Contribution 414.66 15.07 6.25 6.25 Total: -1.00 -32.94 414.66 -8.36 -41.30 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -9.37 Total: 1.24 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 0.44 Total: -0.75 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: -0.09 Total: -42.48 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.57 Total: -21.90 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.94 -8.36 -41.30 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495635295.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.979 kcal (2) G-P(sol) polarization free energy of solvation -32.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds