Wall clock time and date at job start Sat Apr 11 2020 06:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47404 * 2 1 4 4 C 1.34636 * 117.00048 * 179.97438 * 3 2 1 5 5 O 1.21504 * 119.99869 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99965 * 179.97438 * 4 3 2 7 7 C 1.46928 * 120.62743 * 0.02562 * 6 4 3 8 8 C 1.53198 * 108.77438 * 126.37476 * 7 6 4 9 9 C 1.53045 * 109.33816 * 54.61564 * 8 7 6 10 10 C 1.53035 * 109.53857 * 298.68530 * 9 8 7 11 11 H 1.09002 * 109.49941 * 301.34660 * 10 9 8 12 12 C 1.50703 * 109.49555 * 181.28526 * 10 9 8 13 13 O 1.21278 * 119.99985 * 0.06082 * 12 10 9 14 14 N 1.34779 * 119.99944 * 180.02562 * 12 10 9 15 15 C 1.46499 * 119.99872 * 179.97438 * 14 12 10 16 16 C 1.52997 * 109.47012 * 180.02562 * 15 14 12 17 17 C 1.53006 * 109.47164 * 300.00256 * 16 15 14 18 18 C 1.52999 * 109.47592 * 59.99962 * 16 15 14 19 19 C 1.52997 * 109.47232 * 180.02562 * 16 15 14 20 20 C 1.50701 * 109.47212 * 179.97438 * 19 16 15 21 21 H 1.07998 * 120.00129 * 359.97438 * 20 19 16 22 22 C 1.37880 * 119.99861 * 180.02562 * 20 19 16 23 23 N 1.31511 * 120.00346 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99914 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.46938 * 59.99701 * 24 22 20 26 26 H 1.48494 * 109.46914 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.46872 * 299.99704 * 24 22 20 28 28 C 1.46921 * 120.63398 * 180.02562 * 6 4 3 29 29 H 1.08997 * 109.47640 * 300.00883 * 1 2 3 30 30 H 1.09003 * 109.46482 * 60.00140 * 1 2 3 31 31 H 1.08996 * 109.47477 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47211 * 239.99299 * 2 1 3 33 33 H 1.09004 * 109.46636 * 119.99331 * 2 1 3 34 34 H 1.09005 * 109.58907 * 246.15897 * 7 6 4 35 35 H 1.08997 * 109.59008 * 6.58608 * 7 6 4 36 36 H 1.08994 * 109.49925 * 174.58620 * 8 7 6 37 37 H 1.09004 * 109.49703 * 294.68599 * 8 7 6 38 38 H 1.08997 * 109.48227 * 178.64892 * 9 8 7 39 39 H 1.09003 * 109.42954 * 58.69392 * 9 8 7 40 40 H 0.97000 * 119.99708 * 0.02562 * 14 12 10 41 41 H 1.09001 * 109.46813 * 60.00258 * 15 14 12 42 42 H 1.09002 * 109.47133 * 299.99829 * 15 14 12 43 43 H 1.09001 * 109.46801 * 180.02562 * 17 16 15 44 44 H 1.09001 * 109.46998 * 299.99705 * 17 16 15 45 45 H 1.09000 * 109.47050 * 59.99996 * 17 16 15 46 46 H 1.09000 * 109.47160 * 300.00333 * 18 16 15 47 47 H 1.09002 * 109.46719 * 60.00054 * 18 16 15 48 48 H 1.08993 * 109.47839 * 179.97438 * 18 16 15 49 49 H 1.09002 * 109.47153 * 299.99992 * 19 16 15 50 50 H 1.09001 * 109.47289 * 60.00075 * 19 16 15 51 51 H 0.96993 * 120.00442 * 180.02562 * 23 22 20 52 52 H 1.09000 * 109.58950 * 113.83702 * 28 6 4 53 53 H 1.09006 * 109.69977 * 353.47833 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3488 1.5453 0.0005 5 8 4.0889 0.5816 0.0015 6 7 3.8640 2.7907 0.0000 7 6 2.9818 3.9657 -0.0005 8 6 3.3736 4.8770 1.1670 9 6 4.8644 5.2101 1.0717 10 6 5.6840 3.9213 1.1679 11 1 5.4640 3.4197 2.1103 12 6 7.1526 4.2534 1.1057 13 8 7.5093 5.4074 0.9964 14 7 8.0698 3.2680 1.1722 15 6 9.4974 3.5908 1.1112 16 6 10.3162 2.3019 1.2062 17 6 10.0084 1.5985 2.5297 18 6 9.9518 1.3791 0.0416 19 6 11.8073 2.6391 1.1431 20 6 12.6138 1.3695 1.2374 21 1 12.1130 0.4175 1.3331 22 6 13.9911 1.4236 1.2024 23 7 14.6010 2.5829 1.0863 24 14 14.9909 -0.1500 1.3199 25 1 14.6381 -1.0461 0.1896 26 1 16.4380 0.1773 1.2586 27 1 14.6911 -0.8321 2.6046 28 6 5.3183 2.9993 0.0001 29 1 -0.3634 0.5139 0.8898 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.0944 4.5068 -0.9401 35 1 1.9467 3.6455 0.1173 36 1 2.7915 5.7973 1.1214 37 1 3.1750 4.3666 2.1094 38 1 5.1405 5.8778 1.8878 39 1 5.0665 5.6988 0.1186 40 1 7.7845 2.3451 1.2598 41 1 9.7569 4.2486 1.9408 42 1 9.7168 4.0915 0.1681 43 1 10.5922 0.6805 2.5976 44 1 10.2681 2.2559 3.3595 45 1 8.9462 1.3584 2.5751 46 1 8.8896 1.1389 0.0869 47 1 10.1711 1.8801 -0.9013 48 1 10.5355 0.4610 0.1090 49 1 12.0269 3.1403 0.2005 50 1 12.0666 3.2963 1.9732 51 1 15.5698 2.6210 1.0613 52 1 5.6213 3.4616 -0.9394 53 1 5.8268 2.0422 0.1171 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495635295.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:51 Heat of formation + Delta-G solvation = -164.487030 kcal Electronic energy + Delta-G solvation = -30717.148614 eV Core-core repulsion = 26587.053662 eV Total energy + Delta-G solvation = -4130.094952 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.91431 -41.05934 -39.22183 -38.44221 -37.40217 -35.28270 -34.24554 -33.93343 -32.49521 -32.18600 -29.11208 -27.98032 -27.78194 -26.75007 -25.57872 -24.44434 -23.94735 -22.61400 -21.57977 -20.83256 -19.87427 -19.19451 -18.37169 -18.12210 -17.88251 -17.66309 -16.84077 -16.74083 -16.43664 -15.81265 -15.68257 -15.52233 -15.17188 -15.00322 -14.77546 -14.66276 -14.42840 -14.30990 -14.13878 -13.94227 -13.81337 -13.64277 -13.43066 -12.89111 -12.85233 -12.76409 -12.63528 -12.55727 -12.46061 -12.33704 -12.23111 -12.08280 -12.02177 -11.98343 -11.72421 -11.54429 -11.54145 -11.50689 -11.18449 -10.90567 -10.74586 -10.50700 -10.09003 -9.88723 -8.13996 -6.21587 0.97726 1.41961 1.43951 1.51158 1.56600 1.69695 2.18684 2.44677 2.80688 3.20059 3.56140 3.62847 3.73765 3.96113 4.00246 4.06097 4.07907 4.11368 4.15942 4.21522 4.22767 4.35782 4.42471 4.51129 4.66270 4.68830 4.71847 4.72886 4.76242 4.80249 4.90219 4.94901 4.96791 5.04446 5.09326 5.11222 5.16223 5.17296 5.33483 5.36071 5.39808 5.41274 5.46284 5.49283 5.52650 5.56990 5.79420 5.89712 6.19432 6.30418 6.53374 6.93042 7.13840 7.20552 7.45783 8.98081 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015323 B = 0.002301 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.913658 B =12165.705534 C =13664.622229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.073 3.927 3 O -0.366 6.366 4 C 0.647 3.353 5 O -0.605 6.605 6 N -0.588 5.588 7 C 0.107 3.893 8 C -0.124 4.124 9 C -0.099 4.099 10 C -0.110 4.110 11 H 0.114 0.886 12 C 0.516 3.484 13 O -0.577 6.577 14 N -0.710 5.710 15 C 0.141 3.859 16 C -0.065 4.065 17 C -0.122 4.122 18 C -0.122 4.122 19 C 0.041 3.959 20 C -0.514 4.514 21 H 0.070 0.930 22 C -0.005 4.005 23 N -0.937 5.937 24 Si 0.958 3.042 25 H -0.268 1.268 26 H -0.290 1.290 27 H -0.267 1.267 28 C 0.139 3.861 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.410 0.590 41 H 0.048 0.952 42 H 0.049 0.951 43 H 0.054 0.946 44 H 0.039 0.961 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.039 0.961 48 H 0.054 0.946 49 H -0.013 1.013 50 H -0.013 1.013 51 H 0.260 0.740 52 H 0.083 0.917 53 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.238 -1.053 -1.172 33.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.001 4.001 3 O -0.280 6.280 4 C 0.402 3.598 5 O -0.497 6.497 6 N -0.328 5.328 7 C -0.015 4.015 8 C -0.162 4.162 9 C -0.138 4.138 10 C -0.132 4.132 11 H 0.132 0.868 12 C 0.303 3.697 13 O -0.457 6.457 14 N -0.362 5.362 15 C 0.017 3.983 16 C -0.065 4.065 17 C -0.180 4.180 18 C -0.179 4.179 19 C 0.004 3.996 20 C -0.552 4.552 21 H 0.088 0.912 22 C -0.202 4.202 23 N -0.578 5.578 24 Si 0.783 3.217 25 H -0.193 1.193 26 H -0.216 1.216 27 H -0.192 1.192 28 C 0.017 3.983 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.248 0.752 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.058 0.942 48 H 0.073 0.927 49 H 0.006 0.994 50 H 0.006 0.994 51 H 0.068 0.932 52 H 0.101 0.899 53 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -32.672 -0.525 -1.266 32.701 hybrid contribution 1.533 -0.888 0.083 1.774 sum -31.139 -1.413 -1.183 31.194 Atomic orbital electron populations 1.21830 0.90038 1.04442 1.03826 1.23227 0.96639 0.77744 1.02511 1.86232 1.20706 1.34413 1.86634 1.18160 0.81666 0.83967 0.76010 1.90992 1.60657 1.40553 1.57472 1.46917 1.07074 1.03523 1.75289 1.22039 0.94340 0.85018 1.00060 1.21922 0.94914 1.00862 0.98537 1.21358 0.94459 0.94417 1.03520 1.21696 0.90049 0.99792 1.01661 0.86808 1.20890 0.88698 0.84819 0.75321 1.90695 1.82600 1.21483 1.50916 1.46117 1.06033 1.10668 1.73429 1.21227 0.79652 0.97043 1.00384 1.20705 0.95257 0.93699 0.96854 1.21701 1.00513 1.00399 0.95351 1.21692 1.00341 0.99353 0.96534 1.18956 0.90536 0.95698 0.94453 1.21555 0.91235 0.94059 1.48401 0.91155 1.25942 0.99669 0.99089 0.95531 1.70105 1.09167 1.26337 1.52183 0.85606 0.77164 0.79805 0.79102 1.19276 1.21612 1.19221 1.21479 0.78576 1.00312 0.97920 0.91065 0.91130 0.88167 0.91642 0.91542 0.89645 0.87632 0.87584 0.91061 0.91291 0.91331 0.75195 0.93323 0.93240 0.92672 0.94210 0.91535 0.91600 0.94189 0.92712 0.99439 0.99447 0.93169 0.89877 0.88813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 10.29 71.98 0.74 -0.22 16 2 C 0.07 0.98 6.19 71.98 0.45 1.42 16 3 O -0.37 -6.26 8.86 -55.45 -0.49 -6.75 16 4 C 0.65 13.87 8.43 129.79 1.09 14.96 16 5 O -0.61 -17.09 15.55 19.83 0.31 -16.78 16 6 N -0.59 -10.04 2.97 -949.19 -2.82 -12.86 16 7 C 0.11 1.15 6.45 86.36 0.56 1.70 16 8 C -0.12 -1.23 6.08 30.68 0.19 -1.04 16 9 C -0.10 -1.60 4.46 30.62 0.14 -1.46 16 10 C -0.11 -2.05 2.68 -11.45 -0.03 -2.08 16 11 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 12 C 0.52 13.99 7.16 87.66 0.63 14.62 16 13 O -0.58 -20.42 15.98 -3.02 -0.05 -20.47 16 14 N -0.71 -19.45 4.86 -463.06 -2.25 -21.70 16 15 C 0.14 5.01 4.56 86.38 0.39 5.40 16 16 C -0.06 -2.48 0.54 -52.18 -0.03 -2.51 16 17 C -0.12 -4.23 8.05 71.98 0.58 -3.65 16 18 C -0.12 -4.24 8.05 71.98 0.58 -3.66 16 19 C 0.04 2.11 4.04 29.85 0.12 2.23 16 20 C -0.51 -27.88 7.65 25.60 0.20 -27.68 16 21 H 0.07 3.59 5.68 -2.91 -0.02 3.57 16 22 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 23 N -0.94 -57.26 13.29 21.45 0.28 -56.98 16 24 Si 0.96 44.12 29.54 68.60 2.03 46.15 16 25 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 26 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 28 C 0.14 2.57 5.57 86.37 0.48 3.05 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.11 0.94 6.93 -2.39 -0.02 0.92 16 36 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.07 1.26 8.07 -2.39 -0.02 1.24 16 39 H 0.07 1.21 8.13 -2.39 -0.02 1.19 16 40 H 0.41 9.44 5.71 -92.71 -0.53 8.91 16 41 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.05 2.05 6.61 -2.39 -0.02 2.03 16 44 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.07 1.79 6.86 -2.39 -0.02 1.78 16 46 H 0.07 1.81 6.86 -2.39 -0.02 1.79 16 47 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.05 2.05 6.62 -2.39 -0.02 2.03 16 49 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 50 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 51 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 52 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 53 H 0.09 1.93 6.61 -2.38 -0.02 1.92 16 Total: -1.00 -73.70 414.66 3.91 -69.79 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.36 Total: 18.34 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: 6.54 Total: 1.24 kcal Atomic # 7 Polarization: -86.75 SS G_CDS: -4.79 Total: -91.54 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -0.23 Total: -43.99 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -73.70 3.91 -69.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495635295.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.692 kcal (2) G-P(sol) polarization free energy of solvation -73.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds