Wall clock time and date at job start Sat Apr 11 2020 06:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00077 * 2 1 4 4 O 1.20833 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00302 * 180.02562 * 3 2 1 6 6 H 1.09009 * 109.46972 * 299.99362 * 5 3 2 7 7 N 1.46904 * 109.47493 * 180.02562 * 5 3 2 8 8 C 1.46895 * 111.00065 * 84.99579 * 7 5 3 9 9 C 1.53004 * 109.47348 * 180.02562 * 8 7 5 10 10 C 1.50698 * 109.47386 * 180.02562 * 9 8 7 11 11 O 1.21280 * 120.00098 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99971 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99661 * 0.02562 * 12 10 9 14 14 C 1.46498 * 119.99913 * 179.97438 * 12 10 9 15 15 C 1.50706 * 109.46767 * 90.00404 * 14 12 10 16 16 H 1.08000 * 120.00080 * 0.02562 * 15 14 12 17 17 C 1.37876 * 119.99833 * 179.97438 * 15 14 12 18 18 N 1.31513 * 119.99888 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00007 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47003 * 90.00004 * 19 17 15 21 21 H 1.48497 * 109.47370 * 210.00240 * 19 17 15 22 22 H 1.48496 * 109.47019 * 330.00459 * 19 17 15 23 23 C 1.53000 * 109.47495 * 59.99416 * 5 3 2 24 24 C 1.53006 * 109.46588 * 60.00415 * 23 5 3 25 25 C 1.53000 * 109.46588 * 179.97438 * 24 23 5 26 26 C 1.52999 * 109.47002 * 60.00305 * 25 24 23 27 27 C 1.52998 * 109.47310 * 299.99119 * 26 25 24 28 28 C 1.52999 * 109.47002 * 300.00720 * 23 5 3 29 29 H 1.09000 * 109.47070 * 300.00162 * 1 2 3 30 30 H 1.09001 * 109.46626 * 60.00180 * 1 2 3 31 31 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 32 32 H 1.00893 * 110.99542 * 321.04266 * 7 5 3 33 33 H 1.09000 * 109.47443 * 300.00296 * 8 7 5 34 34 H 1.09000 * 109.47459 * 60.00245 * 8 7 5 35 35 H 1.09000 * 109.46728 * 300.00290 * 9 8 7 36 36 H 1.09000 * 109.47004 * 59.99522 * 9 8 7 37 37 H 1.08999 * 109.47839 * 89.99873 * 13 12 10 38 38 H 1.09002 * 109.46572 * 209.99739 * 13 12 10 39 39 H 1.09003 * 109.47438 * 329.99533 * 13 12 10 40 40 H 1.08995 * 109.47056 * 210.00073 * 14 12 10 41 41 H 1.08995 * 109.47010 * 330.00543 * 14 12 10 42 42 H 0.96998 * 119.99879 * 179.97438 * 18 17 15 43 43 H 1.08994 * 109.47081 * 180.02562 * 23 5 3 44 44 H 1.09004 * 109.46892 * 300.00052 * 24 23 5 45 45 H 1.08998 * 109.47144 * 60.00447 * 24 23 5 46 46 H 1.08994 * 109.47539 * 299.99631 * 25 24 23 47 47 H 1.09001 * 109.46747 * 179.97438 * 25 24 23 48 48 H 1.09008 * 109.47133 * 179.97438 * 26 25 24 49 49 H 1.08994 * 109.47529 * 59.99875 * 26 25 24 50 50 H 1.08994 * 109.47441 * 300.00810 * 27 26 25 51 51 H 1.08998 * 109.47254 * 179.97438 * 27 26 25 52 52 H 1.09001 * 109.46780 * 299.99257 * 28 23 5 53 53 H 1.08994 * 109.47529 * 59.99875 * 28 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9564 0.7806 0.8893 7 7 3.9829 2.6836 0.0002 8 6 4.0180 3.2215 1.3666 9 6 4.4545 4.6874 1.3267 10 6 4.4912 5.2390 2.7286 11 8 4.1967 4.5297 3.6673 12 7 4.8512 6.5206 2.9393 13 6 5.2063 7.3775 1.8054 14 6 4.8863 7.0570 4.3021 15 6 6.2557 6.8394 4.8924 16 1 7.0232 6.3509 4.3105 17 6 6.5291 7.2650 6.1751 18 7 5.5946 7.8604 6.8835 19 14 8.2263 6.9947 6.9070 20 1 9.0892 8.1640 6.6012 21 1 8.1111 6.8361 8.3790 22 1 8.8279 5.7693 6.3227 23 6 4.1130 0.5815 -1.2501 24 6 3.5655 1.2753 -2.4990 25 6 4.1126 0.5823 -3.7485 26 6 3.6793 -0.8850 -3.7489 27 6 4.2269 -1.5789 -2.5001 28 6 3.6791 -0.8857 -1.2501 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.3827 3.2383 -0.5915 33 1 3.0252 3.1504 1.8108 34 1 4.7256 2.6475 1.9650 35 1 5.4473 4.7588 0.8824 36 1 3.7466 5.2611 0.7285 37 1 4.3126 7.8804 1.4360 38 1 5.9353 8.1215 2.1267 39 1 5.6355 6.7682 1.0099 40 1 4.6663 8.1243 4.2783 41 1 4.1420 6.5461 4.9129 42 1 5.7868 8.1595 7.7860 43 1 5.2015 0.6382 -1.2502 44 1 2.4769 1.2182 -2.4986 45 1 3.8746 2.3205 -2.4990 46 1 5.2011 0.6398 -3.7487 47 1 3.7222 1.0763 -4.6383 48 1 4.0688 -1.3787 -4.6394 49 1 2.5909 -0.9425 -3.7488 50 1 5.3153 -1.5214 -2.5002 51 1 3.9178 -2.6241 -2.5001 52 1 4.0692 -1.3800 -0.3604 53 1 2.5907 -0.9428 -1.2498 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542619548.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:08 Heat of formation + Delta-G solvation = -164.255531 kcal Electronic energy + Delta-G solvation = -30751.468337 eV Core-core repulsion = 26621.383424 eV Total energy + Delta-G solvation = -4130.084913 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.06615 -40.67565 -39.40133 -38.04705 -36.83744 -36.45213 -34.75862 -33.57564 -31.60350 -30.97977 -29.48783 -28.97910 -27.34328 -26.62131 -25.14130 -23.65572 -23.38742 -22.87090 -21.54082 -20.58318 -19.95263 -18.74820 -18.68121 -18.07662 -17.92726 -17.54561 -17.09526 -16.74706 -16.45317 -16.05532 -15.59268 -15.51956 -15.19528 -14.91327 -14.76583 -14.64482 -14.29960 -14.22671 -14.05787 -13.98290 -13.66693 -13.44949 -13.24303 -13.14481 -13.04595 -12.93908 -12.78298 -12.68470 -12.54720 -12.38385 -12.31319 -12.20943 -12.16009 -12.06710 -11.71148 -11.66663 -11.55725 -11.18348 -10.97391 -10.83216 -10.65074 -10.62459 -9.80565 -9.42576 -8.23055 -6.38337 1.05016 1.36295 1.39620 1.50139 1.68510 1.83201 2.26632 2.41502 2.95542 3.06328 3.60679 3.70958 3.78033 3.84965 3.94869 3.98950 4.15905 4.19483 4.25035 4.26528 4.37265 4.41812 4.47116 4.51045 4.62291 4.64793 4.68007 4.70556 4.72139 4.76012 4.85686 4.88351 4.89802 4.97014 5.04533 5.09282 5.20845 5.21584 5.26743 5.32098 5.35293 5.41663 5.46000 5.52196 5.55506 5.64968 5.71515 5.83321 6.05044 6.13234 6.60619 6.68765 6.78248 7.27276 7.47215 8.84183 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016806 B = 0.002189 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.656158 B =12788.169919 C =13151.986620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.348 6.348 3 C 0.437 3.563 4 O -0.541 6.541 5 C 0.096 3.904 6 H 0.120 0.880 7 N -0.642 5.642 8 C 0.079 3.921 9 C -0.116 4.116 10 C 0.494 3.506 11 O -0.602 6.602 12 N -0.611 5.611 13 C 0.078 3.922 14 C 0.257 3.743 15 C -0.541 4.541 16 H 0.055 0.945 17 C 0.004 3.996 18 N -0.930 5.930 19 Si 0.971 3.029 20 H -0.262 1.262 21 H -0.281 1.281 22 H -0.271 1.271 23 C -0.060 4.060 24 C -0.114 4.114 25 C -0.114 4.114 26 C -0.120 4.120 27 C -0.114 4.114 28 C -0.127 4.127 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.132 0.868 32 H 0.354 0.646 33 H 0.015 0.985 34 H 0.072 0.928 35 H 0.125 0.875 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.098 0.902 40 H 0.023 0.977 41 H -0.005 1.005 42 H 0.267 0.733 43 H 0.102 0.898 44 H 0.039 0.961 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.068 0.932 49 H 0.054 0.946 50 H 0.066 0.934 51 H 0.067 0.933 52 H 0.068 0.932 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.536 -18.221 -25.802 31.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.263 6.263 3 C 0.280 3.720 4 O -0.431 6.431 5 C -0.016 4.016 6 H 0.138 0.862 7 N -0.274 5.274 8 C -0.051 4.051 9 C -0.156 4.156 10 C 0.283 3.717 11 O -0.484 6.484 12 N -0.342 5.342 13 C -0.064 4.064 14 C 0.136 3.864 15 C -0.580 4.580 16 H 0.073 0.927 17 C -0.195 4.195 18 N -0.570 5.570 19 Si 0.795 3.205 20 H -0.187 1.187 21 H -0.207 1.207 22 H -0.196 1.196 23 C -0.078 4.078 24 C -0.152 4.152 25 C -0.152 4.152 26 C -0.158 4.158 27 C -0.151 4.151 28 C -0.165 4.165 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.150 0.850 32 H 0.175 0.825 33 H 0.033 0.967 34 H 0.091 0.909 35 H 0.143 0.857 36 H 0.130 0.870 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.117 0.883 40 H 0.041 0.959 41 H 0.013 0.987 42 H 0.076 0.924 43 H 0.120 0.880 44 H 0.058 0.942 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.082 0.918 48 H 0.087 0.913 49 H 0.073 0.927 50 H 0.085 0.915 51 H 0.086 0.914 52 H 0.086 0.914 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.289 -18.311 -25.178 31.426 hybrid contribution -0.913 0.559 1.418 1.777 sum -5.202 -17.752 -23.760 30.112 Atomic orbital electron populations 1.23517 0.75956 1.05563 1.02036 1.86642 1.24117 1.32450 1.83074 1.25554 0.94136 0.81563 0.70752 1.90668 1.67811 1.37461 1.47121 1.21878 0.84070 0.92085 1.03576 0.86250 1.60911 1.55041 1.01291 1.10144 1.21590 0.99330 0.94709 0.89481 1.21492 1.06103 0.95986 0.92041 1.21340 0.76431 0.81626 0.92291 1.90630 1.51717 1.59018 1.47059 1.48200 1.65424 1.11546 1.09078 1.21958 1.01170 0.95321 0.87992 1.18757 0.95907 0.92909 0.78841 1.21697 0.97773 1.38585 0.99938 0.92704 1.25923 1.01790 0.94583 0.97166 1.70063 1.35202 1.40610 1.11139 0.85362 0.78876 0.78943 0.77312 1.18686 1.20681 1.19599 1.21112 1.01834 0.94434 0.90461 1.21585 0.98902 1.00068 0.94659 1.21483 1.01277 0.95564 0.96835 1.21553 1.00475 0.95506 0.98229 1.21494 1.00746 0.99133 0.93728 1.21870 1.02331 0.93486 0.98782 0.93060 0.91947 0.84969 0.82500 0.96672 0.90929 0.85700 0.87005 0.91338 0.91533 0.88337 0.95940 0.98733 0.92407 0.87988 0.94177 0.91198 0.91166 0.91805 0.91299 0.92737 0.91512 0.91393 0.91373 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.56 113.37 1.20 1.54 16 2 O -0.35 -6.65 7.48 -51.35 -0.38 -7.04 16 3 C 0.44 10.00 5.76 71.23 0.41 10.41 16 4 O -0.54 -15.67 15.06 21.94 0.33 -15.34 16 5 C 0.10 1.88 2.37 44.17 0.10 1.98 16 6 H 0.12 2.31 7.80 -2.38 -0.02 2.29 16 7 N -0.64 -13.75 5.62 -495.44 -2.78 -16.53 16 8 C 0.08 2.26 4.67 86.31 0.40 2.66 16 9 C -0.12 -3.30 4.51 29.85 0.13 -3.17 16 10 C 0.49 21.18 7.67 87.66 0.67 21.86 16 11 O -0.60 -32.35 15.56 -3.03 -0.05 -32.40 16 12 N -0.61 -26.75 2.86 -851.14 -2.43 -29.18 16 13 C 0.08 2.34 10.24 127.77 1.31 3.65 16 14 C 0.26 14.38 5.16 85.64 0.44 14.82 16 15 C -0.54 -31.90 9.39 25.60 0.24 -31.66 16 16 H 0.05 3.18 7.81 -2.91 -0.02 3.16 16 17 C 0.00 0.24 5.46 84.65 0.46 0.70 16 18 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 19 Si 0.97 45.53 29.54 68.60 2.03 47.55 16 20 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 22 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 23 C -0.06 -0.86 2.21 -10.79 -0.02 -0.89 16 24 C -0.11 -1.64 4.69 30.60 0.14 -1.50 16 25 C -0.11 -1.30 5.92 30.59 0.18 -1.12 16 26 C -0.12 -1.26 5.92 30.59 0.18 -1.08 16 27 C -0.11 -1.19 5.93 30.61 0.18 -1.01 16 28 C -0.13 -1.64 4.69 30.61 0.14 -1.50 16 29 H 0.05 0.89 8.13 -2.39 -0.02 0.87 16 30 H 0.06 0.92 8.13 -2.39 -0.02 0.91 16 31 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.35 7.51 7.00 -89.70 -0.63 6.88 16 33 H 0.01 0.52 7.58 -2.39 -0.02 0.50 16 34 H 0.07 2.26 8.01 -2.39 -0.02 2.24 16 35 H 0.13 2.91 7.40 -2.39 -0.02 2.89 16 36 H 0.11 2.62 8.11 -2.39 -0.02 2.61 16 37 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 39 H 0.10 2.20 6.44 -2.39 -0.02 2.19 16 40 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 41 H -0.01 -0.35 7.42 -2.39 -0.02 -0.37 16 42 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 43 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.04 0.68 7.22 -2.39 -0.02 0.66 16 45 H 0.07 1.05 7.21 -2.39 -0.02 1.03 16 46 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 49 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 52 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 53 H 0.08 1.13 5.32 -2.39 -0.01 1.12 16 Total: -1.00 -78.81 415.32 3.43 -75.38 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.25 Total: 19.04 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 6.18 Total: 15.70 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -4.93 Total: -102.89 kcal Atomic # 8 Polarization: -54.68 SS G_CDS: -0.10 Total: -54.78 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -78.81 3.43 -75.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542619548.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.877 kcal (2) G-P(sol) polarization free energy of solvation -78.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds