Wall clock time and date at job start Sat Apr 11 2020 06:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42903 * 113.99575 * 2 1 4 4 C 1.53010 * 109.47021 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.46825 * 174.99960 * 4 3 2 6 6 N 1.46495 * 109.47010 * 295.00246 * 4 3 2 7 7 C 1.34778 * 119.99877 * 274.99984 * 6 4 3 8 8 O 1.21586 * 120.00017 * 4.97307 * 7 6 4 9 9 N 1.34773 * 119.99872 * 184.97904 * 7 6 4 10 10 C 1.46927 * 120.63301 * 354.76593 * 9 7 6 11 11 C 1.53195 * 108.77845 * 233.58961 * 10 9 7 12 12 C 1.53045 * 109.31169 * 305.36825 * 11 10 9 13 13 C 1.52998 * 109.46000 * 181.38738 * 12 11 10 14 14 C 1.50698 * 109.47107 * 174.96799 * 13 12 11 15 15 H 1.08001 * 120.00005 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00024 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99827 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00013 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47225 * 90.00429 * 18 16 14 20 20 H 1.48502 * 109.47381 * 210.00146 * 18 16 14 21 21 H 1.48502 * 109.47472 * 330.00113 * 18 16 14 22 22 C 1.53034 * 109.52905 * 61.36474 * 12 11 10 23 23 C 1.46927 * 120.62928 * 174.74596 * 9 7 6 24 24 C 1.53005 * 109.46681 * 55.00111 * 4 3 2 25 25 H 1.08992 * 109.87307 * 63.99434 * 24 4 3 26 26 C 1.54102 * 109.87231 * 185.00037 * 24 4 3 27 27 C 1.54813 * 104.18543 * 121.45531 * 26 24 4 28 28 C 1.54991 * 102.09488 * 20.87640 * 27 26 24 29 29 O 1.43743 * 109.87931 * 302.82965 * 24 4 3 30 30 H 1.09002 * 109.47566 * 60.00328 * 1 2 3 31 31 H 1.09005 * 109.47036 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47546 * 299.99587 * 1 2 3 33 33 H 1.08999 * 109.47182 * 60.00385 * 3 2 1 34 34 H 1.09000 * 109.47227 * 299.99663 * 3 2 1 35 35 H 0.97003 * 120.00528 * 94.99792 * 6 4 3 36 36 H 1.08995 * 109.58976 * 113.80244 * 10 9 7 37 37 H 1.09002 * 109.58725 * 353.37698 * 10 9 7 38 38 H 1.08990 * 109.50091 * 185.41310 * 11 10 9 39 39 H 1.08996 * 109.49569 * 65.31116 * 11 10 9 40 40 H 1.09006 * 109.45483 * 301.35152 * 12 11 10 41 41 H 1.09003 * 109.46798 * 294.96647 * 13 12 11 42 42 H 1.08997 * 109.47433 * 54.96322 * 13 12 11 43 43 H 0.96999 * 120.00153 * 179.97438 * 17 16 14 44 44 H 1.09000 * 109.49774 * 58.58456 * 22 12 11 45 45 H 1.09010 * 109.49643 * 178.67716 * 22 12 11 46 46 H 1.08998 * 109.58774 * 246.19465 * 23 9 7 47 47 H 1.08997 * 109.59061 * 6.62486 * 23 9 7 48 48 H 1.09000 * 110.48905 * 240.12962 * 26 24 4 49 49 H 1.09001 * 110.49135 * 2.77690 * 26 24 4 50 50 H 1.09004 * 110.90704 * 139.07389 * 27 26 24 51 51 H 1.09003 * 110.90802 * 262.67873 * 27 26 24 52 52 H 1.09005 * 110.62027 * 81.47772 * 28 27 26 53 53 H 1.08997 * 110.62272 * 204.47705 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.9782 2.1767 -0.0902 6 7 3.9766 0.5641 1.2508 7 6 4.1662 1.3223 2.3489 8 8 3.8850 2.5050 2.3269 9 7 4.6675 0.7695 3.4711 10 6 4.9050 -0.6782 3.5509 11 6 4.1916 -1.2274 4.7905 12 6 4.6484 -0.4465 6.0249 13 6 3.9641 -1.0149 7.2697 14 6 4.5056 -0.3295 8.4977 15 1 5.2619 0.4353 8.4001 16 6 4.0348 -0.6781 9.7458 17 7 3.1136 -1.6091 9.8646 18 14 4.7055 0.1719 11.2680 19 1 3.8841 1.3724 11.5670 20 1 4.6534 -0.7630 12.4206 21 1 6.1122 0.5821 11.0266 22 6 4.2728 1.0284 5.8650 23 6 4.9874 1.6032 4.6379 24 6 3.9779 0.3200 -1.1827 25 1 3.7152 0.8107 -2.1197 26 6 5.5002 0.0883 -1.1213 27 6 5.6475 -1.4516 -1.0599 28 6 4.2884 -1.9308 -1.6304 29 8 3.3462 -0.9691 -1.1087 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6884 1.8464 0.8900 34 1 1.6884 1.8464 -0.8900 35 1 4.1323 -0.3926 1.2893 36 1 5.9751 -0.8692 3.6307 37 1 4.5108 -1.1630 2.6578 38 1 4.4384 -2.2817 4.9151 39 1 3.1141 -1.1173 4.6687 40 1 5.7295 -0.5364 6.1318 41 1 2.8895 -0.8451 7.2029 42 1 4.1595 -2.0852 7.3349 43 1 2.7826 -1.8546 10.7427 44 1 3.1945 1.1170 5.7330 45 1 4.5774 1.5799 6.7547 46 1 6.0642 1.5984 4.8063 47 1 4.6476 2.6238 4.4620 48 1 5.9824 0.4823 -2.0160 49 1 5.9203 0.5478 -0.2266 50 1 6.4730 -1.7887 -1.6868 51 1 5.7785 -1.7891 -0.0318 52 1 4.2990 -1.9055 -2.7201 53 1 4.0530 -2.9325 -1.2710 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563808325.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:25 Heat of formation + Delta-G solvation = -145.358819 kcal Electronic energy + Delta-G solvation = -31817.950494 eV Core-core repulsion = 27688.685004 eV Total energy + Delta-G solvation = -4129.265490 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.69622 -40.39819 -38.89507 -38.39547 -35.83756 -35.68515 -34.00256 -32.80985 -32.30592 -31.33462 -29.61933 -28.90677 -26.94186 -26.31354 -24.50070 -23.99600 -23.60786 -22.44830 -21.82887 -21.15866 -20.52976 -19.18222 -18.40411 -17.89169 -17.21514 -17.16571 -16.69679 -16.58974 -16.44554 -16.18617 -15.84873 -15.72820 -15.33982 -15.08417 -14.78445 -14.69875 -14.41336 -14.38608 -14.27196 -13.86753 -13.58041 -13.48306 -13.23491 -13.06442 -12.99725 -12.69974 -12.50285 -12.49017 -12.32284 -12.23194 -12.11366 -11.93914 -11.82393 -11.76308 -11.48463 -11.33546 -11.25725 -11.02128 -10.80473 -10.55145 -10.51832 -10.45938 -10.14308 -9.41912 -8.16310 -6.25395 1.40880 1.41598 1.52271 1.65882 2.13756 2.42750 2.83095 2.99250 3.06379 3.17369 3.56315 3.77979 3.91577 4.01193 4.07748 4.09151 4.16082 4.19915 4.23450 4.36221 4.41119 4.43682 4.49722 4.52418 4.55549 4.58635 4.66687 4.68462 4.75250 4.82097 4.87321 4.88295 4.90318 4.97011 5.00394 5.05273 5.08940 5.17852 5.27372 5.31005 5.34147 5.39613 5.54199 5.56231 5.62476 5.81984 5.90649 6.01206 6.13005 6.30435 6.33774 6.91365 6.98792 7.43117 7.56679 8.95638 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017013 B = 0.002544 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.392299 B =11002.138919 C =11180.521286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.373 6.373 3 C 0.050 3.950 4 C 0.167 3.833 5 H 0.107 0.893 6 N -0.717 5.717 7 C 0.704 3.296 8 O -0.635 6.635 9 N -0.625 5.625 10 C 0.122 3.878 11 C -0.124 4.124 12 C -0.071 4.071 13 C 0.033 3.967 14 C -0.527 4.527 15 H 0.064 0.936 16 C -0.003 4.003 17 N -0.937 5.937 18 Si 0.959 3.041 19 H -0.277 1.277 20 H -0.285 1.285 21 H -0.260 1.260 22 C -0.110 4.110 23 C 0.137 3.863 24 C 0.077 3.923 25 H 0.094 0.906 26 C -0.151 4.151 27 C -0.151 4.151 28 C 0.036 3.964 29 O -0.361 6.361 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.026 0.974 33 H 0.027 0.973 34 H 0.071 0.929 35 H 0.406 0.594 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.042 0.958 40 H 0.067 0.933 41 H -0.020 1.020 42 H -0.008 1.008 43 H 0.261 0.739 44 H 0.033 0.967 45 H 0.069 0.931 46 H 0.082 0.918 47 H 0.077 0.923 48 H 0.092 0.908 49 H 0.071 0.929 50 H 0.094 0.906 51 H 0.072 0.928 52 H 0.068 0.932 53 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.552 1.126 -28.617 28.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.292 6.292 3 C -0.028 4.028 4 C 0.062 3.938 5 H 0.125 0.875 6 N -0.375 5.375 7 C 0.405 3.595 8 O -0.517 6.517 9 N -0.361 5.361 10 C 0.000 4.000 11 C -0.162 4.162 12 C -0.090 4.090 13 C -0.004 4.004 14 C -0.565 4.565 15 H 0.083 0.917 16 C -0.200 4.200 17 N -0.578 5.578 18 Si 0.784 3.216 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.184 1.184 22 C -0.149 4.149 23 C 0.014 3.986 24 C 0.018 3.982 25 H 0.111 0.889 26 C -0.188 4.188 27 C -0.188 4.188 28 C -0.041 4.041 29 O -0.280 6.280 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.089 0.911 35 H 0.245 0.755 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.085 0.915 41 H -0.002 1.002 42 H 0.010 0.990 43 H 0.070 0.930 44 H 0.052 0.948 45 H 0.087 0.913 46 H 0.100 0.900 47 H 0.095 0.905 48 H 0.111 0.889 49 H 0.089 0.911 50 H 0.113 0.887 51 H 0.091 0.909 52 H 0.086 0.914 53 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.178 1.665 -28.454 28.807 hybrid contribution -0.417 0.099 1.456 1.517 sum 3.761 1.764 -26.998 27.316 Atomic orbital electron populations 1.22791 0.81304 1.03071 0.99671 1.88058 1.19396 1.26483 1.95222 1.22911 0.94258 0.85610 1.00026 1.21243 0.92134 0.97620 0.82825 0.87496 1.45040 1.72324 1.11290 1.08822 1.16004 0.77912 0.84631 0.80921 1.90846 1.59994 1.16519 1.84330 1.47345 1.66975 1.08726 1.13025 1.21729 1.01347 0.78791 0.98155 1.21923 0.99517 1.00217 0.94532 1.21018 0.99695 0.94198 0.94049 1.19013 0.93952 0.94621 0.92794 1.21682 1.21984 1.20705 0.92162 0.91739 1.25948 0.95477 0.95931 1.02676 1.70103 1.30763 1.32506 1.24389 0.85539 0.79293 0.78143 0.78647 1.20288 1.21072 1.18389 1.21764 0.98900 0.96854 0.97357 1.21457 0.99692 0.94337 0.83072 1.22977 0.92663 0.86214 0.96321 0.88879 1.22995 0.94678 0.97347 1.03809 1.23132 0.98644 0.94518 1.02546 1.23725 0.87823 0.93870 0.98654 1.89179 1.38752 1.15691 1.84392 0.93083 0.89068 0.95505 0.95496 0.91100 0.75497 0.89168 0.89093 0.90132 0.93881 0.91465 1.00153 0.98999 0.93046 0.94766 0.91264 0.89999 0.90492 0.88908 0.91054 0.88699 0.90912 0.91402 0.88768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 113.37 1.25 1.80 16 2 O -0.37 -8.93 8.31 -126.99 -1.06 -9.99 16 3 C 0.05 1.13 5.74 71.99 0.41 1.54 16 4 C 0.17 3.38 2.21 45.00 0.10 3.48 16 5 H 0.11 2.20 7.65 -2.39 -0.02 2.18 16 6 N -0.72 -16.68 3.98 -457.81 -1.82 -18.50 16 7 C 0.70 21.33 8.26 179.05 1.48 22.81 16 8 O -0.63 -23.62 15.42 -3.99 -0.06 -23.69 16 9 N -0.62 -18.13 2.97 -836.91 -2.49 -20.62 16 10 C 0.12 2.96 6.39 86.36 0.55 3.52 16 11 C -0.12 -3.94 5.36 30.67 0.16 -3.77 16 12 C -0.07 -2.78 2.10 -10.77 -0.02 -2.80 16 13 C 0.03 1.73 4.45 29.85 0.13 1.86 16 14 C -0.53 -29.42 8.39 25.60 0.21 -29.20 16 15 H 0.06 3.41 7.06 -2.91 -0.02 3.39 16 16 C 0.00 -0.19 5.46 84.66 0.46 0.28 16 17 N -0.94 -57.56 13.29 21.45 0.28 -57.28 16 18 Si 0.96 44.48 29.54 68.60 2.03 46.50 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 21 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 22 C -0.11 -4.18 5.19 30.67 0.16 -4.02 16 23 C 0.14 4.32 6.44 86.36 0.56 4.88 16 24 C 0.08 1.14 3.21 30.97 0.10 1.24 16 25 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 26 C -0.15 -1.73 6.30 31.59 0.20 -1.53 16 27 C -0.15 -1.50 7.15 31.89 0.23 -1.27 16 28 C 0.04 0.43 7.72 72.66 0.56 0.99 16 29 O -0.36 -6.50 8.54 -126.99 -1.08 -7.59 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.03 0.76 8.08 -2.39 -0.02 0.74 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.41 8.54 5.74 -92.71 -0.53 8.00 16 36 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.09 1.81 5.65 -2.39 -0.01 1.80 16 38 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 41 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 42 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 43 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 44 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.07 2.79 6.91 -2.38 -0.02 2.77 16 46 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.08 2.59 7.00 -2.39 -0.02 2.57 16 48 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.07 1.02 7.16 -2.39 -0.02 1.00 16 50 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 51 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 52 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 53 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -72.89 408.85 2.69 -70.20 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.35 Total: 21.17 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 6.54 Total: -0.21 kcal Atomic # 7 Polarization: -92.37 SS G_CDS: -4.02 Total: -96.40 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -2.20 Total: -41.26 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -72.89 2.69 -70.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563808325.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.158 kcal (2) G-P(sol) polarization free energy of solvation -72.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds