Wall clock time and date at job start Sat Apr 11 2020 06:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45197 * 109.47131 * 2 1 4 4 C 1.34233 * 116.99646 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00197 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99674 * 179.97438 * 4 3 2 7 7 C 1.53005 * 109.47213 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.47213 * 180.02562 * 7 6 4 9 9 H 1.08996 * 109.47220 * 55.00052 * 8 7 6 10 10 C 1.52998 * 109.46837 * 175.00328 * 8 7 6 11 11 N 1.46494 * 109.46899 * 294.99985 * 8 7 6 12 12 C 1.34780 * 119.99814 * 154.99865 * 11 8 7 13 13 O 1.21588 * 119.99997 * 355.01461 * 12 11 8 14 14 N 1.34780 * 119.99984 * 175.00575 * 12 11 8 15 15 C 1.46923 * 120.63031 * 4.95008 * 14 12 11 16 16 C 1.53615 * 108.54302 * 126.36832 * 15 14 12 17 17 C 1.53033 * 109.24562 * 54.85307 * 16 15 14 18 18 C 1.53008 * 109.46126 * 178.49158 * 17 16 15 19 19 C 1.50700 * 109.46749 * 295.06821 * 18 17 16 20 20 H 1.07995 * 120.00506 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99675 * 180.02562 * 19 18 17 22 22 N 1.31520 * 120.00025 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00150 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46622 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47110 * 119.99622 * 23 21 19 26 26 H 1.48504 * 109.46871 * 239.99817 * 23 21 19 27 27 C 1.53038 * 109.54101 * 298.51192 * 17 16 15 28 28 C 1.46923 * 120.62617 * 185.22480 * 14 12 11 29 29 H 1.09001 * 109.46937 * 300.00310 * 1 2 3 30 30 H 1.09000 * 109.46617 * 60.00120 * 1 2 3 31 31 H 1.09000 * 109.47305 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46937 * 239.99690 * 2 1 3 33 33 H 1.09000 * 109.46617 * 119.99880 * 2 1 3 34 34 H 1.09006 * 109.47039 * 60.00834 * 6 4 3 35 35 H 1.09003 * 109.47643 * 300.00514 * 6 4 3 36 36 H 1.08997 * 109.46506 * 60.00203 * 7 6 4 37 37 H 1.09003 * 109.47082 * 300.00669 * 7 6 4 38 38 H 1.08996 * 109.47441 * 59.99859 * 10 8 7 39 39 H 1.08997 * 109.47396 * 180.02562 * 10 8 7 40 40 H 1.09003 * 109.47001 * 299.99906 * 10 8 7 41 41 H 0.96999 * 120.00548 * 335.00079 * 11 8 7 42 42 H 1.09002 * 109.58191 * 246.19618 * 15 14 12 43 43 H 1.09001 * 109.58936 * 6.61975 * 15 14 12 44 44 H 1.09003 * 109.63142 * 294.86039 * 16 15 14 45 45 H 1.09004 * 109.45724 * 174.74151 * 16 15 14 46 46 H 1.08998 * 109.45128 * 58.52702 * 17 16 15 47 47 H 1.08997 * 109.46714 * 55.06699 * 18 17 16 48 48 H 1.09001 * 109.46814 * 175.06943 * 18 17 16 49 49 H 0.96997 * 119.99910 * 180.02562 * 22 21 19 50 50 H 1.09006 * 109.49615 * 301.41244 * 27 17 16 51 51 H 1.08994 * 109.52889 * 181.33566 * 27 17 16 52 52 H 1.08995 * 109.59334 * 353.37651 * 28 14 12 53 53 H 1.09004 * 109.58349 * 113.66347 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 6 5.4488 2.8572 0.0001 8 6 6.0336 4.2710 0.0002 9 1 5.6277 4.8321 0.8420 10 6 7.5564 4.1930 0.1260 11 7 5.6809 4.9454 -1.2516 12 6 5.6244 6.2911 -1.2993 13 8 5.7767 6.9424 -0.2839 14 7 5.3993 6.9150 -2.4726 15 6 5.1063 6.1420 -3.6873 16 6 3.7975 6.6670 -4.2966 17 6 3.9170 8.1754 -4.5255 18 6 2.6297 8.6972 -5.1672 19 6 2.4730 8.0952 -6.5398 20 1 3.2167 7.4088 -6.9166 21 6 1.3799 8.4207 -7.3145 22 7 0.4739 9.2562 -6.8554 23 14 1.1851 7.6740 -9.0157 24 1 2.3312 6.7718 -9.2944 25 1 -0.0807 6.8998 -9.0745 26 1 1.1503 8.7575 -10.0308 27 6 4.1409 8.8803 -3.1857 28 6 5.4481 8.3807 -2.5625 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.5845 3.4699 0.8896 35 1 3.5853 3.4690 -0.8904 36 1 5.7846 2.3247 -0.8896 37 1 5.7846 2.3253 0.8903 38 1 7.9622 3.6320 -0.7158 39 1 7.9730 5.2002 0.1265 40 1 7.8187 3.6912 1.0574 41 1 5.4880 4.4234 -2.0461 42 1 5.9199 6.2632 -4.4025 43 1 4.9954 5.0882 -3.4319 44 1 2.9703 6.4667 -3.6155 45 1 3.6142 6.1679 -5.2482 46 1 4.7598 8.3765 -5.1869 47 1 1.7767 8.4185 -4.5486 48 1 2.6793 9.7829 -5.2501 49 1 -0.2953 9.4850 -7.4003 50 1 3.3104 8.6592 -2.5151 51 1 4.2023 9.9566 -3.3461 52 1 5.5627 8.8044 -1.5649 53 1 6.2905 8.6806 -3.1859 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568860664.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:35 Heat of formation + Delta-G solvation = -162.245355 kcal Electronic energy + Delta-G solvation = -30346.785437 eV Core-core repulsion = 26216.787691 eV Total energy + Delta-G solvation = -4129.997745 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.65872 -41.35972 -39.07738 -37.97226 -37.14437 -35.66348 -34.20450 -33.40813 -32.61156 -31.85709 -30.88900 -29.58538 -26.54003 -26.18004 -24.20157 -24.00913 -23.57882 -22.29386 -21.61788 -21.29562 -20.50099 -19.08818 -18.61472 -18.37947 -17.87857 -17.45454 -17.19615 -16.56467 -16.44757 -15.97927 -15.48267 -15.32835 -15.14237 -14.91084 -14.72982 -14.52885 -14.40411 -14.24357 -14.18005 -13.81271 -13.65554 -13.53727 -13.28401 -13.03196 -12.90545 -12.87207 -12.69883 -12.54458 -12.50017 -12.45771 -12.29213 -12.22626 -12.09415 -11.82695 -11.69204 -11.53511 -11.52189 -11.35136 -11.18474 -10.93588 -10.80006 -10.50773 -10.16793 -9.39874 -8.14345 -6.23696 1.14380 1.42198 1.43374 1.55299 1.68383 1.71854 2.19347 2.44330 2.95253 3.19679 3.56978 3.74048 3.93945 3.98023 4.02297 4.04722 4.05824 4.11294 4.12383 4.24941 4.33173 4.43500 4.45021 4.52116 4.56466 4.58444 4.71429 4.82778 4.84868 4.85464 4.86856 4.90078 4.92463 5.00085 5.03244 5.11862 5.14784 5.19062 5.35123 5.35887 5.36286 5.42715 5.47526 5.58490 5.62283 5.66847 5.85140 5.92792 6.05250 6.31674 6.69542 6.93820 7.01404 7.45176 7.61433 8.97836 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007873 B = 0.002830 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3555.627207 B = 9892.360055 C =12611.977995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.369 6.369 4 C 0.465 3.535 5 O -0.536 6.536 6 C -0.113 4.113 7 C -0.103 4.103 8 C 0.161 3.839 9 H 0.078 0.922 10 C -0.158 4.158 11 N -0.733 5.733 12 C 0.706 3.294 13 O -0.633 6.633 14 N -0.626 5.626 15 C 0.119 3.881 16 C -0.112 4.112 17 C -0.072 4.072 18 C 0.032 3.968 19 C -0.523 4.523 20 H 0.068 0.932 21 C -0.005 4.005 22 N -0.938 5.938 23 Si 0.959 3.041 24 H -0.256 1.256 25 H -0.283 1.283 26 H -0.284 1.284 27 C -0.122 4.122 28 C 0.138 3.862 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.118 0.882 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.040 0.960 40 H 0.081 0.919 41 H 0.405 0.595 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.045 0.955 45 H 0.075 0.925 46 H 0.063 0.937 47 H -0.017 1.017 48 H -0.015 1.015 49 H 0.260 0.740 50 H 0.044 0.956 51 H 0.069 0.931 52 H 0.079 0.921 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.362 -18.120 14.160 24.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.286 6.286 4 C 0.310 3.690 5 O -0.426 6.426 6 C -0.151 4.151 7 C -0.141 4.141 8 C 0.057 3.943 9 H 0.096 0.904 10 C -0.216 4.216 11 N -0.391 5.391 12 C 0.407 3.593 13 O -0.515 6.515 14 N -0.362 5.362 15 C -0.004 4.004 16 C -0.151 4.151 17 C -0.091 4.091 18 C -0.005 4.005 19 C -0.561 4.561 20 H 0.086 0.914 21 C -0.201 4.201 22 N -0.579 5.579 23 Si 0.785 3.215 24 H -0.180 1.180 25 H -0.209 1.209 26 H -0.210 1.210 27 C -0.160 4.160 28 C 0.014 3.986 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.100 0.900 41 H 0.244 0.756 42 H 0.102 0.898 43 H 0.116 0.884 44 H 0.064 0.936 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.002 0.998 48 H 0.003 0.997 49 H 0.069 0.931 50 H 0.063 0.937 51 H 0.088 0.912 52 H 0.098 0.902 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.525 -17.915 14.849 25.143 hybrid contribution -0.924 -0.119 -1.334 1.627 sum 8.601 -18.034 13.515 24.122 Atomic orbital electron populations 1.21840 0.91047 1.04296 1.03523 1.23251 0.96734 0.79283 1.02648 1.86546 1.24692 1.33731 1.83605 1.24158 0.80423 0.93297 0.71149 1.90650 1.60844 1.44234 1.46852 1.21510 0.96738 0.89658 1.07185 1.21659 0.91701 0.95236 1.05466 1.20841 0.95516 0.91897 0.86089 0.90383 1.22126 0.94499 1.01643 1.03329 1.45377 1.75012 1.03914 1.14843 1.15971 0.77505 0.82730 0.83058 1.90856 1.60353 1.66021 1.34256 1.47378 1.73645 1.07293 1.07896 1.21880 0.97233 0.95310 0.85955 1.21849 0.96601 0.95868 1.00765 1.21019 0.98055 0.95191 0.94810 1.19028 0.92657 0.94304 0.94511 1.21703 1.06839 1.26282 1.01297 0.91364 1.25970 0.95907 0.95775 1.02492 1.70125 1.12410 1.36342 1.39051 0.85480 0.78334 0.78321 0.79412 1.17962 1.20905 1.21044 1.21916 0.97185 1.00227 0.96673 1.21405 0.97142 0.78424 1.01585 0.91357 0.91774 0.88181 0.91300 0.90955 0.86375 0.87124 0.89828 0.88512 0.91435 0.94082 0.90007 0.75586 0.89825 0.88395 0.93637 0.90683 0.91871 0.99812 0.99705 0.93123 0.93732 0.91197 0.90208 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.29 71.98 0.74 -0.91 16 2 C 0.05 0.82 6.19 71.98 0.45 1.27 16 3 O -0.37 -7.11 10.22 -51.44 -0.53 -7.63 16 4 C 0.46 8.79 7.96 71.24 0.57 9.36 16 5 O -0.54 -12.43 15.73 21.99 0.35 -12.09 16 6 C -0.11 -1.61 5.70 29.85 0.17 -1.44 16 7 C -0.10 -1.31 4.04 30.60 0.12 -1.19 16 8 C 0.16 2.62 2.62 44.99 0.12 2.73 16 9 H 0.08 1.55 7.51 -2.39 -0.02 1.53 16 10 C -0.16 -2.38 9.48 71.98 0.68 -1.70 16 11 N -0.73 -13.85 4.44 -457.82 -2.03 -15.88 16 12 C 0.71 19.24 8.26 179.05 1.48 20.72 16 13 O -0.63 -22.02 15.39 -3.99 -0.06 -22.08 16 14 N -0.63 -16.59 2.97 -836.08 -2.48 -19.07 16 15 C 0.12 2.71 6.42 86.51 0.56 3.27 16 16 C -0.11 -3.59 5.21 30.81 0.16 -3.43 16 17 C -0.07 -2.71 2.10 -10.77 -0.02 -2.73 16 18 C 0.03 1.62 4.45 29.85 0.13 1.76 16 19 C -0.52 -28.07 8.39 25.60 0.21 -27.85 16 20 H 0.07 3.42 7.05 -2.91 -0.02 3.40 16 21 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 22 N -0.94 -56.64 13.29 21.45 0.28 -56.36 16 23 Si 0.96 43.00 29.54 68.60 2.03 45.02 16 24 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 27 C -0.12 -4.06 5.36 30.67 0.16 -3.90 16 28 C 0.14 3.90 6.44 86.36 0.56 4.46 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 33 H 0.07 1.03 8.13 -2.39 -0.02 1.01 16 34 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.11 1.55 7.75 -2.39 -0.02 1.54 16 36 H 0.08 1.04 8.10 -2.39 -0.02 1.02 16 37 H 0.10 1.16 8.10 -2.39 -0.02 1.14 16 38 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 41 H 0.41 5.91 6.09 -92.71 -0.56 5.35 16 42 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.10 1.62 5.64 -2.39 -0.01 1.61 16 44 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.07 2.53 6.91 -2.39 -0.02 2.51 16 46 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 47 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 48 H -0.02 -0.87 8.14 -2.39 -0.02 -0.88 16 49 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 50 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 51 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 52 H 0.08 2.41 6.99 -2.39 -0.02 2.39 16 53 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -73.26 422.10 4.42 -68.84 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.31 Total: 18.63 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 6.55 Total: 0.62 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -4.23 Total: -91.31 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -0.24 Total: -41.80 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -73.26 4.42 -68.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568860664.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.405 kcal (2) G-P(sol) polarization free energy of solvation -73.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds