Wall clock time and date at job start Sat Apr 11 2020 06:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99810 * 2 1 4 4 H 1.09003 * 109.57578 * 330.15934 * 3 2 1 5 5 C 1.53095 * 109.52007 * 90.31544 * 3 2 1 6 6 O 1.42911 * 109.41303 * 177.51307 * 5 3 2 7 7 C 1.42907 * 114.15558 * 298.87462 * 6 5 3 8 8 C 1.53100 * 109.40799 * 61.05874 * 7 6 5 9 9 C 1.53175 * 109.21522 * 302.48844 * 8 7 6 10 10 H 1.09000 * 109.54564 * 297.08433 * 9 8 7 11 11 C 1.52997 * 109.54071 * 176.90686 * 9 8 7 12 12 N 1.46496 * 109.47153 * 65.00300 * 11 9 8 13 13 C 1.34785 * 120.00171 * 179.97438 * 12 11 9 14 14 O 1.21582 * 119.99775 * 355.01669 * 13 12 11 15 15 N 1.34768 * 119.99834 * 175.01236 * 13 12 11 16 16 C 1.46922 * 120.63583 * 4.94781 * 15 13 12 17 17 C 1.53619 * 108.54797 * 126.36522 * 16 15 13 18 18 C 1.53049 * 109.24002 * 54.85810 * 17 16 15 19 19 C 1.53002 * 109.45941 * 178.49053 * 18 17 16 20 20 C 1.50696 * 109.47143 * 295.06612 * 19 18 17 21 21 H 1.07999 * 119.99874 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99748 * 179.97438 * 20 19 18 23 23 N 1.31518 * 120.00008 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99903 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46875 * 90.00634 * 24 22 20 26 26 H 1.48501 * 109.47207 * 210.00141 * 24 22 20 27 27 H 1.48498 * 109.47157 * 330.00532 * 24 22 20 28 28 C 1.53043 * 109.53633 * 298.51156 * 18 17 16 29 29 C 1.46929 * 120.62847 * 185.22539 * 15 13 12 30 30 H 1.08998 * 109.46974 * 299.99476 * 1 2 3 31 31 H 1.08999 * 109.47328 * 59.99887 * 1 2 3 32 32 H 1.09003 * 109.46913 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.48287 * 297.49171 * 5 3 2 34 34 H 1.09000 * 109.48104 * 57.52132 * 5 3 2 35 35 H 1.09006 * 109.42772 * 301.11219 * 7 6 5 36 36 H 1.08997 * 109.54006 * 181.07600 * 7 6 5 37 37 H 1.09002 * 109.51882 * 182.55442 * 8 7 6 38 38 H 1.08990 * 109.52239 * 62.42968 * 8 7 6 39 39 H 1.09004 * 109.46977 * 185.00135 * 11 9 8 40 40 H 1.09002 * 109.47406 * 305.00358 * 11 9 8 41 41 H 0.96994 * 120.00359 * 359.97438 * 12 11 9 42 42 H 1.09012 * 109.58793 * 246.20079 * 16 15 13 43 43 H 1.09000 * 109.58409 * 6.61839 * 16 15 13 44 44 H 1.08994 * 109.63300 * 294.86914 * 17 16 15 45 45 H 1.09000 * 109.43377 * 174.72428 * 17 16 15 46 46 H 1.08996 * 109.46025 * 58.53085 * 18 17 16 47 47 H 1.09002 * 109.47062 * 55.07049 * 19 18 17 48 48 H 1.09001 * 109.46630 * 175.06339 * 19 18 17 49 49 H 0.96996 * 119.99705 * 179.97438 * 23 22 20 50 50 H 1.08995 * 109.50007 * 301.41533 * 28 18 17 51 51 H 1.08999 * 109.49428 * 181.31333 * 28 18 17 52 52 H 1.09001 * 109.58907 * 353.37267 * 29 15 13 53 53 H 1.09003 * 109.58968 * 113.65665 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 2.0014 -0.5110 5 6 2.2255 1.7696 1.4429 6 8 2.8597 3.0503 1.4404 7 6 4.1470 3.0642 0.8200 8 6 4.0089 2.6504 -0.6476 9 6 3.3606 1.2646 -0.7218 10 1 4.0092 0.5324 -0.2409 11 6 3.1485 0.8767 -2.1865 12 7 4.4484 0.7313 -2.8463 13 6 4.5086 0.3910 -4.1491 14 8 3.4900 0.1162 -4.7533 15 7 5.6980 0.3553 -4.7819 16 6 6.9471 0.5786 -4.0413 17 6 7.8925 -0.6018 -4.3105 18 6 8.0784 -0.7650 -5.8208 19 6 9.0490 -1.9158 -6.0936 20 6 10.4123 -1.5606 -5.5587 21 1 10.5705 -0.6094 -5.0724 22 6 11.4573 -2.4505 -5.6892 23 7 11.2645 -3.6091 -6.2810 24 14 13.1475 -2.0100 -5.0268 25 1 13.2614 -2.4664 -3.6182 26 1 14.1901 -2.6754 -5.8485 27 1 13.3345 -0.5380 -5.0869 28 6 6.7280 -1.0715 -6.4725 29 6 5.7697 0.0982 -6.2267 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.2629 1.8417 1.9491 34 1 2.8580 1.0517 1.9652 35 1 4.8051 2.3641 1.3347 36 1 4.5682 4.0679 0.8766 37 1 4.9951 2.6165 -1.1107 38 1 3.3846 3.3733 -1.1726 39 1 2.6076 -0.0683 -2.2374 40 1 2.5713 1.6533 -2.6883 41 1 5.2658 0.8800 -2.3457 42 1 7.4108 1.5059 -4.3781 43 1 6.7330 0.6414 -2.9744 44 1 7.4656 -1.5149 -3.8958 45 1 8.8582 -0.4067 -3.8441 46 1 8.4822 0.1572 -6.2387 47 1 8.6893 -2.8190 -5.6008 48 1 9.1140 -2.0893 -7.1678 49 1 11.9997 -4.2349 -6.3731 50 1 6.3120 -1.9802 -6.0374 51 1 6.8648 -1.2106 -7.5449 52 1 4.7786 -0.1564 -6.6023 53 1 6.1369 0.9878 -6.7385 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592009379.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:59 Heat of formation + Delta-G solvation = -157.167154 kcal Electronic energy + Delta-G solvation = -30729.338085 eV Core-core repulsion = 26599.560547 eV Total energy + Delta-G solvation = -4129.777538 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.58208 -40.78917 -38.87026 -38.28037 -36.68061 -35.68820 -34.24538 -33.48791 -31.87652 -31.40901 -29.88016 -28.29815 -27.53469 -26.22825 -24.29557 -24.18489 -24.00409 -23.13888 -21.50337 -21.34961 -20.45759 -19.13698 -18.38674 -17.91287 -17.59281 -17.23751 -16.73625 -16.70139 -16.51976 -16.25519 -16.06673 -15.45234 -15.30974 -15.24987 -14.98021 -14.71526 -14.66990 -14.36438 -14.30512 -14.07229 -13.86354 -13.60368 -13.39708 -13.31989 -12.96967 -12.73147 -12.71600 -12.49693 -12.31376 -12.30657 -12.15426 -12.10818 -11.81168 -11.73657 -11.46385 -11.40758 -11.24880 -11.04002 -10.97060 -10.82415 -10.50909 -10.27012 -10.19052 -9.43360 -8.14697 -6.24414 1.42878 1.43766 1.54387 1.64268 2.11521 2.44139 2.53521 2.87459 3.08782 3.19140 3.50452 3.64187 3.74583 3.93065 3.97846 4.02827 4.09373 4.10520 4.21943 4.26596 4.36542 4.42432 4.44643 4.46252 4.53467 4.54791 4.67384 4.69931 4.71962 4.77877 4.82479 4.83381 4.86388 4.90160 4.96274 4.98424 5.04851 5.11200 5.20496 5.32624 5.34227 5.40346 5.47404 5.56630 5.61178 5.83161 5.91266 5.97576 6.00642 6.30288 6.30492 6.92814 6.94410 7.44456 7.53226 8.97390 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014562 B = 0.002242 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.360733 B =12485.532176 C =13456.788907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.398 6.398 3 C 0.065 3.935 4 H 0.075 0.925 5 C 0.045 3.955 6 O -0.393 6.393 7 C 0.054 3.946 8 C -0.144 4.144 9 C -0.093 4.093 10 H 0.089 0.911 11 C 0.154 3.846 12 N -0.733 5.733 13 C 0.702 3.298 14 O -0.638 6.638 15 N -0.624 5.624 16 C 0.118 3.882 17 C -0.113 4.113 18 C -0.072 4.072 19 C 0.032 3.968 20 C -0.524 4.524 21 H 0.070 0.930 22 C -0.006 4.006 23 N -0.939 5.939 24 Si 0.961 3.039 25 H -0.274 1.274 26 H -0.290 1.290 27 H -0.258 1.258 28 C -0.122 4.122 29 C 0.137 3.863 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.407 0.593 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.041 0.959 45 H 0.078 0.922 46 H 0.066 0.934 47 H -0.019 1.019 48 H -0.015 1.015 49 H 0.260 0.740 50 H 0.041 0.959 51 H 0.071 0.929 52 H 0.077 0.923 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.299 15.888 16.368 29.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.317 6.317 3 C 0.007 3.993 4 H 0.093 0.907 5 C -0.032 4.032 6 O -0.312 6.312 7 C -0.023 4.023 8 C -0.182 4.182 9 C -0.112 4.112 10 H 0.107 0.893 11 C 0.030 3.970 12 N -0.392 5.392 13 C 0.404 3.596 14 O -0.520 6.520 15 N -0.361 5.361 16 C -0.004 4.004 17 C -0.152 4.152 18 C -0.090 4.090 19 C -0.005 4.005 20 C -0.562 4.562 21 H 0.088 0.912 22 C -0.203 4.203 23 N -0.580 5.580 24 Si 0.787 3.213 25 H -0.200 1.200 26 H -0.216 1.216 27 H -0.182 1.182 28 C -0.161 4.161 29 C 0.014 3.986 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.123 0.877 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.247 0.753 42 H 0.108 0.892 43 H 0.115 0.885 44 H 0.059 0.941 45 H 0.097 0.903 46 H 0.085 0.915 47 H 0.000 1.000 48 H 0.004 0.996 49 H 0.069 0.931 50 H 0.059 0.941 51 H 0.090 0.910 52 H 0.096 0.904 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.927 15.569 15.977 29.256 hybrid contribution 1.209 -0.804 -0.108 1.456 sum -17.718 14.765 15.869 27.995 Atomic orbital electron populations 1.23002 0.79500 1.03846 1.00965 1.87923 1.21401 1.27297 1.95094 1.22719 0.94576 0.85296 0.96742 0.90713 1.23038 0.99291 0.85424 0.95443 1.87944 1.33364 1.30483 1.79421 1.22822 0.84310 1.03762 0.91364 1.22286 1.02673 0.94871 0.98379 1.21508 0.96854 0.99065 0.93750 0.89271 1.21052 0.83846 1.00765 0.91369 1.45134 1.10273 1.75026 1.08740 1.15999 0.83379 0.77983 0.82250 1.90853 1.35126 1.58464 1.67531 1.47373 1.04879 1.74352 1.09474 1.21921 0.83281 0.98635 0.96545 1.21862 0.99530 0.97507 0.96265 1.21025 0.93621 0.98828 0.95562 1.19030 0.93872 0.93264 0.94382 1.21671 0.95171 1.02590 1.36752 0.91197 1.26005 1.03460 0.94993 0.95846 1.70125 1.33324 1.09412 1.45151 0.85497 0.78789 0.78930 0.78133 1.19961 1.21563 1.18214 1.21927 0.95540 0.97667 1.00953 1.21432 0.99954 0.97942 0.79264 0.92360 0.93565 0.88792 0.87694 0.92039 0.91929 0.86883 0.88690 0.90647 0.93052 0.92382 0.75329 0.89245 0.88478 0.94062 0.90324 0.91514 1.00042 0.99645 0.93126 0.94054 0.91010 0.90437 0.89845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.82 113.37 1.23 1.50 16 2 O -0.40 -6.85 9.75 -148.98 -1.45 -8.30 16 3 C 0.07 0.93 2.21 30.68 0.07 1.00 16 4 H 0.07 1.03 7.79 -2.39 -0.02 1.01 16 5 C 0.05 0.58 6.47 72.01 0.47 1.04 16 6 O -0.39 -5.75 10.76 -148.98 -1.60 -7.35 16 7 C 0.05 0.55 6.85 72.02 0.49 1.04 16 8 C -0.14 -1.52 5.25 30.69 0.16 -1.36 16 9 C -0.09 -1.32 2.03 -10.68 -0.02 -1.34 16 10 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 11 C 0.15 3.11 5.02 86.38 0.43 3.54 16 12 N -0.73 -15.83 5.22 -478.54 -2.50 -18.33 16 13 C 0.70 21.04 8.30 179.05 1.49 22.52 16 14 O -0.64 -24.34 15.77 -3.97 -0.06 -24.41 16 15 N -0.62 -17.42 2.97 -836.06 -2.48 -19.90 16 16 C 0.12 2.76 6.42 86.51 0.56 3.31 16 17 C -0.11 -3.69 5.21 30.82 0.16 -3.53 16 18 C -0.07 -2.73 2.10 -10.76 -0.02 -2.75 16 19 C 0.03 1.62 4.45 29.85 0.13 1.75 16 20 C -0.52 -28.19 8.39 25.60 0.21 -27.98 16 21 H 0.07 3.49 7.05 -2.91 -0.02 3.47 16 22 C -0.01 -0.35 5.46 84.65 0.46 0.12 16 23 N -0.94 -57.08 13.29 21.45 0.28 -56.80 16 24 Si 0.96 43.03 29.54 68.60 2.03 45.06 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 26 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 27 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 28 C -0.12 -4.21 5.36 30.67 0.16 -4.04 16 29 C 0.14 4.03 6.44 86.36 0.56 4.58 16 30 H 0.06 0.48 7.96 -2.39 -0.02 0.47 16 31 H 0.05 0.53 8.09 -2.39 -0.02 0.51 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.11 1.09 7.96 -2.39 -0.02 1.07 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 36 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.09 0.77 7.27 -2.39 -0.02 0.76 16 38 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.05 1.30 7.66 -2.39 -0.02 1.29 16 40 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.41 6.54 5.16 -92.71 -0.48 6.06 16 42 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 43 H 0.10 1.65 5.64 -2.39 -0.01 1.64 16 44 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.08 2.65 6.91 -2.39 -0.02 2.63 16 46 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 47 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 48 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 49 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 50 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 51 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 52 H 0.08 2.45 7.00 -2.39 -0.02 2.43 16 53 H 0.08 2.11 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -73.65 408.32 1.15 -72.50 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.40 Total: 18.12 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 6.54 Total: -0.59 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -4.69 Total: -95.03 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -3.12 Total: -40.06 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -73.65 1.15 -72.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592009379.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.665 kcal (2) G-P(sol) polarization free energy of solvation -73.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds