Wall clock time and date at job start Sat Apr 11 2020 06:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99836 * 2 1 4 4 H 1.09002 * 109.51574 * 29.87565 * 3 2 1 5 5 C 1.53086 * 109.57437 * 269.71941 * 3 2 1 6 6 O 1.42908 * 109.41578 * 297.66868 * 5 3 2 7 7 C 1.42897 * 114.09718 * 298.84290 * 6 5 3 8 8 C 1.53100 * 109.41734 * 61.15513 * 7 6 5 9 9 C 1.53173 * 109.52279 * 149.99946 * 3 2 1 10 10 H 1.09000 * 109.54181 * 182.94615 * 9 3 2 11 11 C 1.52999 * 109.54698 * 303.12271 * 9 3 2 12 12 N 1.46498 * 109.47648 * 185.00017 * 11 9 3 13 13 C 1.34776 * 120.00185 * 180.02562 * 12 11 9 14 14 O 1.21586 * 120.00294 * 355.01278 * 13 12 11 15 15 N 1.34773 * 119.99571 * 175.01915 * 13 12 11 16 16 C 1.46929 * 120.62764 * 184.94314 * 15 13 12 17 17 C 1.52762 * 109.01109 * 233.58369 * 16 15 13 18 18 C 1.53035 * 109.38239 * 305.58922 * 17 16 15 19 19 C 1.53006 * 109.44835 * 181.25526 * 18 17 16 20 20 C 1.50699 * 109.47115 * 64.93719 * 19 18 17 21 21 H 1.07996 * 120.00283 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99532 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00425 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99592 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47556 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47340 * 119.99589 * 24 22 20 27 27 H 1.48497 * 109.46930 * 239.99687 * 24 22 20 28 28 C 1.53039 * 109.53990 * 61.24068 * 18 17 16 29 29 C 1.46927 * 120.63544 * 5.22704 * 15 13 12 30 30 H 1.08994 * 109.47351 * 299.99535 * 1 2 3 31 31 H 1.08992 * 109.47273 * 60.00280 * 1 2 3 32 32 H 1.09004 * 109.46788 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.48124 * 57.65341 * 5 3 2 34 34 H 1.09000 * 109.48442 * 177.68802 * 5 3 2 35 35 H 1.08998 * 109.48413 * 181.13552 * 7 6 5 36 36 H 1.09005 * 109.48219 * 301.16324 * 7 6 5 37 37 H 1.08993 * 109.52521 * 182.48531 * 8 7 6 38 38 H 1.09000 * 109.51727 * 62.29244 * 8 7 6 39 39 H 1.09000 * 109.47031 * 305.00330 * 11 9 3 40 40 H 1.09007 * 109.47113 * 64.99699 * 11 9 3 41 41 H 0.96998 * 119.99507 * 0.02562 * 12 11 9 42 42 H 1.09003 * 109.58751 * 353.41991 * 16 15 13 43 43 H 1.08999 * 109.58405 * 113.84399 * 16 15 13 44 44 H 1.09005 * 109.56254 * 185.55431 * 17 16 15 45 45 H 1.08997 * 109.35813 * 65.49972 * 17 16 15 46 46 H 1.09002 * 109.46083 * 301.21889 * 18 17 16 47 47 H 1.09002 * 109.47087 * 184.93917 * 19 18 17 48 48 H 1.09002 * 109.46414 * 304.93649 * 19 18 17 49 49 H 0.97000 * 119.99845 * 180.02562 * 23 22 20 50 50 H 1.08999 * 109.49844 * 178.68552 * 28 18 17 51 51 H 1.08997 * 109.49870 * 58.58222 * 28 18 17 52 52 H 1.09002 * 109.58430 * 246.15571 * 29 15 13 53 53 H 1.08996 * 109.58269 * 6.43824 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3444 2.0005 0.5118 5 6 2.2252 1.7712 -1.4424 6 8 3.1436 0.8911 -2.0938 7 6 4.4382 0.8482 -1.4906 8 6 4.3121 0.3454 -0.0500 9 6 3.3605 1.2647 0.7218 10 1 3.7799 2.2697 0.7680 11 6 3.1665 0.7255 2.1405 12 7 4.4357 0.7986 2.8686 13 6 4.5050 0.3748 4.1461 14 8 3.4967 0.0169 4.7236 15 7 5.6922 0.3480 4.7836 16 6 5.8022 -0.2117 6.1376 17 6 6.4606 0.8209 7.0509 18 6 7.7939 1.2608 6.4419 19 6 8.4694 2.2717 7.3708 20 6 8.8259 1.5988 8.6713 21 1 8.5943 0.5545 8.8202 22 6 9.4478 2.3165 9.6709 23 7 9.7302 3.5880 9.4894 24 14 9.8903 1.4823 11.2826 25 1 9.4694 0.0589 11.2353 26 1 11.3585 1.5580 11.4924 27 1 9.1944 2.1668 12.4017 28 6 7.5447 1.9088 5.0781 29 6 6.8997 0.8835 4.1402 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.2733 1.7612 -1.9734 34 1 2.6303 2.7831 -1.4411 35 1 5.0806 0.1732 -2.0561 36 1 4.8724 1.8480 -1.4901 37 1 5.2926 0.3538 0.4259 38 1 3.9158 -0.6700 -0.0520 39 1 2.4162 1.3239 2.6572 40 1 2.8343 -0.3116 2.0927 41 1 5.2260 1.1520 2.4312 42 1 4.8084 -0.4512 6.5160 43 1 6.4128 -1.1142 6.1114 44 1 6.6365 0.3806 8.0324 45 1 5.8039 1.6850 7.1516 46 1 8.4409 0.3923 6.3185 47 1 9.3751 2.6511 6.8978 48 1 7.7869 3.0991 7.5649 49 1 10.1681 4.0927 10.1925 50 1 8.4922 2.2428 4.6554 51 1 6.8778 2.7626 5.1974 52 1 7.6016 0.0720 3.9478 53 1 6.6301 1.3641 3.1999 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592009381.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:04 Heat of formation + Delta-G solvation = -155.398722 kcal Electronic energy + Delta-G solvation = -30727.377024 eV Core-core repulsion = 26597.676171 eV Total energy + Delta-G solvation = -4129.700853 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.57824 -40.79187 -38.88482 -37.92405 -36.64683 -35.70896 -34.19592 -33.46856 -31.90623 -31.46929 -29.93131 -28.19787 -27.46837 -26.28170 -24.41195 -24.34858 -23.77265 -23.20188 -21.45942 -21.10578 -20.41364 -19.14121 -18.39047 -17.64655 -17.47418 -17.33337 -16.73826 -16.57083 -16.51364 -16.39558 -16.00149 -15.45634 -15.27009 -15.06620 -14.94818 -14.87475 -14.71493 -14.44754 -14.23202 -14.05312 -13.84175 -13.39792 -13.36174 -13.17786 -13.02238 -12.92676 -12.70249 -12.50501 -12.32037 -12.24761 -12.10048 -12.01842 -11.76810 -11.68046 -11.38263 -11.32687 -11.27173 -11.01957 -10.99570 -10.79562 -10.51899 -10.22837 -10.06594 -9.43002 -8.16679 -6.25161 1.39688 1.41223 1.53153 1.64576 2.12341 2.42514 2.72658 2.91537 3.09366 3.17129 3.60808 3.68498 3.77563 3.92150 3.95701 4.01909 4.09397 4.23861 4.30995 4.32097 4.40865 4.44445 4.50086 4.51199 4.53464 4.58335 4.62580 4.69776 4.75693 4.77085 4.82035 4.88853 4.89541 4.91609 4.95286 5.01713 5.09278 5.11165 5.31761 5.34080 5.35187 5.40033 5.49159 5.56060 5.62203 5.82760 5.91349 5.99426 6.14356 6.31103 6.41050 6.91812 6.96594 7.43259 7.54444 8.95183 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.025977 B = 0.001973 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.623501 B =14189.181293 C =14767.923209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.058 3.942 4 H 0.086 0.914 5 C 0.041 3.959 6 O -0.397 6.397 7 C 0.058 3.942 8 C -0.143 4.143 9 C -0.091 4.091 10 H 0.112 0.888 11 C 0.155 3.845 12 N -0.732 5.732 13 C 0.702 3.298 14 O -0.639 6.639 15 N -0.624 5.624 16 C 0.136 3.864 17 C -0.110 4.110 18 C -0.073 4.073 19 C 0.033 3.967 20 C -0.526 4.526 21 H 0.063 0.937 22 C -0.003 4.003 23 N -0.935 5.935 24 Si 0.957 3.043 25 H -0.261 1.261 26 H -0.280 1.280 27 H -0.284 1.284 28 C -0.124 4.124 29 C 0.119 3.881 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.408 0.592 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.037 0.963 46 H 0.065 0.935 47 H -0.007 1.007 48 H -0.017 1.017 49 H 0.261 0.739 50 H 0.083 0.917 51 H 0.048 0.952 52 H 0.088 0.912 53 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.716 -4.180 -25.975 29.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C -0.001 4.001 4 H 0.104 0.896 5 C -0.036 4.036 6 O -0.316 6.316 7 C -0.018 4.018 8 C -0.180 4.180 9 C -0.110 4.110 10 H 0.130 0.870 11 C 0.031 3.969 12 N -0.391 5.391 13 C 0.403 3.597 14 O -0.521 6.521 15 N -0.361 5.361 16 C 0.013 3.987 17 C -0.149 4.149 18 C -0.091 4.091 19 C -0.004 4.004 20 C -0.564 4.564 21 H 0.081 0.919 22 C -0.201 4.201 23 N -0.576 5.576 24 Si 0.783 3.217 25 H -0.185 1.185 26 H -0.206 1.206 27 H -0.210 1.210 28 C -0.162 4.162 29 C -0.003 4.003 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.098 0.902 35 H 0.118 0.882 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.248 0.752 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.056 0.944 46 H 0.083 0.917 47 H 0.012 0.988 48 H 0.001 0.999 49 H 0.069 0.931 50 H 0.102 0.898 51 H 0.067 0.933 52 H 0.106 0.894 53 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.305 -4.599 -25.672 29.746 hybrid contribution 0.472 0.549 1.528 1.691 sum -13.833 -4.050 -24.144 28.120 Atomic orbital electron populations 1.22928 0.80133 1.03463 1.00609 1.87960 1.20688 1.27573 1.95076 1.22855 0.94649 0.85921 0.96646 0.89604 1.23179 0.94597 0.93577 0.92274 1.87937 1.23175 1.66238 1.54272 1.22729 0.84392 1.01843 0.92871 1.22146 0.99957 0.99650 0.96282 1.21558 0.95672 1.01412 0.92346 0.87044 1.21029 0.84430 1.00912 0.90540 1.45119 1.14222 1.68576 1.11151 1.16019 0.83146 0.78450 0.82073 1.90861 1.35557 1.57874 1.67815 1.47370 1.07292 1.64007 1.17409 1.21355 1.01178 0.95716 0.80462 1.21687 0.96187 0.98129 0.98863 1.21032 0.95459 0.98338 0.94320 1.19022 0.93812 0.93824 0.93752 1.21716 1.37306 0.96965 1.00455 0.91918 1.25930 0.96162 0.95476 1.02484 1.70100 1.43528 1.09171 1.34831 0.85506 0.77789 0.79100 0.79318 1.18480 1.20570 1.20967 1.21935 1.01041 0.97887 0.95357 1.21810 0.85946 0.97157 0.95428 0.93576 0.92790 0.89389 0.88104 0.90201 0.88152 0.91331 0.89475 0.92194 0.92994 0.92940 0.75228 0.90797 0.90311 0.91432 0.94443 0.91703 0.98843 0.99899 0.93056 0.89848 0.93282 0.89424 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.82 113.37 1.23 1.53 16 2 O -0.39 -6.85 9.08 -141.94 -1.29 -8.13 16 3 C 0.06 0.73 2.43 30.68 0.07 0.80 16 4 H 0.09 0.85 7.79 -2.39 -0.02 0.83 16 5 C 0.04 0.45 6.49 72.01 0.47 0.92 16 6 O -0.40 -6.36 10.70 -141.94 -1.52 -7.88 16 7 C 0.06 0.65 6.84 72.02 0.49 1.14 16 8 C -0.14 -1.77 5.10 30.69 0.16 -1.62 16 9 C -0.09 -1.14 2.14 -10.68 -0.02 -1.17 16 10 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 11 C 0.16 3.03 4.82 86.38 0.42 3.44 16 12 N -0.73 -15.12 5.23 -478.54 -2.50 -17.62 16 13 C 0.70 20.99 8.30 179.06 1.49 22.48 16 14 O -0.64 -24.83 15.77 -3.99 -0.06 -24.89 16 15 N -0.62 -17.46 2.98 -837.74 -2.50 -19.96 16 16 C 0.14 4.27 6.41 86.22 0.55 4.82 16 17 C -0.11 -4.08 5.17 30.53 0.16 -3.93 16 18 C -0.07 -2.75 2.10 -10.77 -0.02 -2.78 16 19 C 0.03 1.67 4.45 29.85 0.13 1.80 16 20 C -0.53 -28.99 8.39 25.60 0.21 -28.77 16 21 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 22 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 23 N -0.94 -56.63 13.29 21.45 0.28 -56.35 16 24 Si 0.96 44.18 29.54 68.60 2.03 46.21 16 25 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 26 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 27 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 28 C -0.12 -3.60 5.36 30.67 0.16 -3.43 16 29 C 0.12 2.56 6.39 86.36 0.55 3.11 16 30 H 0.05 0.51 8.09 -2.39 -0.02 0.49 16 31 H 0.05 0.49 7.86 -2.39 -0.02 0.47 16 32 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.10 0.95 7.86 -2.38 -0.02 0.93 16 34 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 37 H 0.09 0.82 7.31 -2.39 -0.02 0.80 16 38 H 0.06 1.06 7.83 -2.39 -0.02 1.04 16 39 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.05 1.28 7.78 -2.38 -0.02 1.26 16 41 H 0.41 5.84 5.20 -92.71 -0.48 5.36 16 42 H 0.07 2.52 6.99 -2.39 -0.02 2.51 16 43 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.07 2.70 6.91 -2.38 -0.02 2.68 16 45 H 0.04 1.50 8.14 -2.39 -0.02 1.49 16 46 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 47 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 48 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 49 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 50 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 51 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 52 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 53 H 0.10 1.46 5.64 -2.39 -0.01 1.45 16 Total: -1.00 -75.96 407.18 1.36 -74.61 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.40 Total: 15.40 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 6.51 Total: -1.38 kcal Atomic # 7 Polarization: -89.21 SS G_CDS: -4.71 Total: -93.92 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -2.87 Total: -40.91 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -75.96 1.36 -74.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592009381.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.793 kcal (2) G-P(sol) polarization free energy of solvation -75.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds