Wall clock time and date at job start Sat Apr 11 2020 06:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00638 * 2 1 4 4 C 1.52999 * 109.47493 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47317 * 300.00486 * 4 3 2 6 6 N 1.46505 * 109.47212 * 59.99649 * 5 4 3 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21584 * 120.00541 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99489 * 180.02562 * 7 6 5 10 10 C 1.47023 * 125.64943 * 359.69259 * 9 7 6 11 11 C 1.54333 * 107.26279 * 178.84878 * 10 9 7 12 12 C 1.55152 * 103.02368 * 338.14260 * 11 10 9 13 13 O 1.42900 * 111.00509 * 277.23249 * 12 11 10 14 14 C 1.50710 * 111.03722 * 153.39547 * 12 11 10 15 15 H 1.07996 * 119.99882 * 6.32831 * 14 12 11 16 16 C 1.37874 * 119.99859 * 186.33385 * 14 12 11 17 17 N 1.31516 * 119.99950 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99890 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47122 * 89.99938 * 18 16 14 20 20 H 1.48500 * 109.47293 * 209.99851 * 18 16 14 21 21 H 1.48502 * 109.47281 * 329.99870 * 18 16 14 22 22 C 1.47429 * 125.64459 * 180.02562 * 9 7 6 23 23 C 1.53006 * 109.46623 * 60.00305 * 4 3 2 24 24 C 1.53002 * 109.46977 * 179.97438 * 23 4 3 25 25 C 1.53000 * 109.47233 * 300.00464 * 24 23 4 26 26 C 1.52996 * 109.47328 * 59.99531 * 25 24 23 27 27 C 1.52992 * 109.46961 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.46973 * 300.00050 * 1 2 3 29 29 H 1.09003 * 109.46984 * 59.99589 * 1 2 3 30 30 H 1.08998 * 109.47433 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46818 * 60.00039 * 3 2 1 32 32 H 1.09000 * 109.47144 * 300.00268 * 3 2 1 33 33 H 1.09002 * 109.47153 * 299.99641 * 5 4 3 34 34 H 1.09001 * 109.46832 * 179.97438 * 5 4 3 35 35 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 36 36 H 1.08991 * 109.88407 * 298.39613 * 10 9 7 37 37 H 1.09001 * 109.88103 * 59.56133 * 10 9 7 38 38 H 1.09000 * 110.85265 * 219.67535 * 11 10 9 39 39 H 1.09004 * 110.51427 * 96.45697 * 11 10 9 40 40 H 0.96698 * 113.99899 * 173.64949 * 13 12 11 41 41 H 0.97008 * 119.99592 * 180.02562 * 17 16 14 42 42 H 1.08990 * 110.36777 * 322.93181 * 22 9 7 43 43 H 1.09001 * 110.36359 * 85.14761 * 22 9 7 44 44 H 1.08993 * 109.46955 * 300.00075 * 23 4 3 45 45 H 1.09000 * 109.47050 * 59.99904 * 23 4 3 46 46 H 1.08992 * 109.47063 * 180.02562 * 24 23 4 47 47 H 1.09004 * 109.46733 * 59.99806 * 24 23 4 48 48 H 1.09000 * 109.46968 * 299.99808 * 25 24 23 49 49 H 1.09001 * 109.47194 * 180.02562 * 25 24 23 50 50 H 1.08996 * 109.47261 * 179.97438 * 26 25 24 51 51 H 1.09000 * 109.46870 * 60.00217 * 26 25 24 52 52 H 1.08996 * 109.47747 * 300.00196 * 27 4 3 53 53 H 1.09002 * 109.47103 * 60.00608 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 6 3.9865 0.4254 1.2501 6 7 3.3905 -0.9130 1.2501 7 6 3.6496 -1.7660 2.2608 8 8 4.3775 -1.4247 3.1729 9 7 3.1017 -2.9974 2.2605 10 6 2.2028 -3.5350 1.2288 11 6 1.8552 -4.9832 1.6337 12 6 3.0211 -5.3707 2.5811 13 8 4.1633 -5.8013 1.8382 14 6 2.5901 -6.4281 3.5648 15 1 1.6144 -6.8825 3.4762 16 6 3.4415 -6.8153 4.5778 17 7 4.6299 -6.2623 4.6853 18 14 2.9071 -8.1254 5.7974 19 1 3.3021 -9.4642 5.2905 20 1 3.5620 -7.8790 7.1072 21 1 1.4323 -8.0745 5.9641 22 6 3.2991 -4.0258 3.2982 23 6 3.9874 0.4250 -1.2484 24 6 5.5127 0.3046 -1.2482 25 6 6.1346 1.7025 -1.2483 26 6 5.6827 2.4620 0.0006 27 6 4.1579 2.5822 0.0013 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6888 1.8463 0.8900 32 1 1.6888 1.8464 -0.8900 33 1 3.6646 0.9664 2.1399 34 1 5.0731 0.3389 1.2503 35 1 2.8101 -1.1853 0.5222 36 1 1.2950 -2.9340 1.1783 37 1 2.7054 -3.5330 0.2616 38 1 1.8345 -5.6357 0.7608 39 1 0.9023 -5.0138 2.1621 40 1 4.9478 -5.9612 2.3806 41 1 5.2290 -6.5350 5.3979 42 1 4.3235 -3.9985 3.6694 43 1 2.5955 -3.8780 4.1174 44 1 3.5440 -0.5706 -1.2484 45 1 3.6661 0.9659 -2.1386 46 1 5.8346 -0.2360 -2.1381 47 1 5.8343 -0.2359 -0.3579 48 1 5.8130 2.2432 -2.1385 49 1 7.2212 1.6168 -1.2486 50 1 6.1262 3.4577 0.0007 51 1 6.0044 1.9213 0.8908 52 1 3.8367 3.1234 -0.8886 53 1 3.8359 3.1228 0.8913 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592022920.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:19 Heat of formation + Delta-G solvation = -156.639948 kcal Electronic energy + Delta-G solvation = -32505.759198 eV Core-core repulsion = 28376.004521 eV Total energy + Delta-G solvation = -4129.754677 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.57749 -40.52456 -38.91331 -38.20805 -35.98885 -35.29580 -34.21722 -32.95534 -31.73867 -31.51163 -29.54142 -28.07659 -27.59858 -26.19502 -25.97685 -24.06939 -23.48130 -22.05511 -21.45774 -20.83305 -19.87398 -19.09078 -18.58445 -17.30645 -17.20316 -17.14865 -16.83095 -16.60289 -16.50290 -16.16618 -15.61790 -15.45047 -15.18558 -15.05762 -14.78261 -14.70985 -14.54647 -14.07128 -13.92159 -13.67494 -13.50100 -13.31359 -13.18260 -13.02816 -12.85200 -12.82705 -12.58592 -12.50379 -12.32007 -12.23358 -12.19248 -12.07881 -11.99232 -11.91772 -11.28050 -11.16773 -11.12205 -10.98473 -10.92685 -10.64922 -10.51896 -10.29858 -9.99898 -9.22870 -8.22455 -6.40226 1.42888 1.44372 1.54597 1.80495 2.24781 2.39628 2.73696 3.03377 3.28091 3.62411 3.78196 3.82991 3.83371 4.06044 4.11312 4.21256 4.24705 4.33115 4.35582 4.38333 4.49984 4.53848 4.55784 4.62431 4.64588 4.64950 4.68352 4.76007 4.78713 4.79309 4.85613 4.95852 5.03796 5.07945 5.11780 5.14006 5.17953 5.27919 5.30588 5.35310 5.40815 5.42390 5.46737 5.49104 5.58656 5.72623 5.77438 6.08293 6.24340 6.40542 6.67460 7.21083 7.29671 7.36512 7.71509 8.82710 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017811 B = 0.003024 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.707647 B = 9257.682335 C = 9898.283887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.411 6.411 3 C 0.072 3.928 4 C -0.059 4.059 5 C 0.150 3.850 6 N -0.714 5.714 7 C 0.704 3.296 8 O -0.654 6.654 9 N -0.635 5.635 10 C 0.115 3.885 11 C -0.109 4.109 12 C 0.233 3.767 13 O -0.587 6.587 14 C -0.555 4.555 15 H 0.070 0.930 16 C 0.024 3.976 17 N -0.916 5.916 18 Si 0.966 3.034 19 H -0.274 1.274 20 H -0.287 1.287 21 H -0.264 1.264 22 C 0.132 3.868 23 C -0.098 4.098 24 C -0.127 4.127 25 C -0.113 4.113 26 C -0.125 4.125 27 C -0.098 4.098 28 H 0.039 0.961 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.052 0.948 35 H 0.413 0.587 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.372 0.628 41 H 0.268 0.732 42 H 0.040 0.960 43 H 0.035 0.965 44 H 0.053 0.947 45 H 0.086 0.914 46 H 0.065 0.935 47 H 0.035 0.965 48 H 0.080 0.920 49 H 0.058 0.942 50 H 0.081 0.919 51 H 0.045 0.955 52 H 0.095 0.905 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.436 19.082 -15.432 25.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.331 6.331 3 C -0.005 4.005 4 C -0.060 4.060 5 C 0.025 3.975 6 N -0.376 5.376 7 C 0.406 3.594 8 O -0.538 6.538 9 N -0.371 5.371 10 C -0.008 4.008 11 C -0.147 4.147 12 C 0.193 3.807 13 O -0.394 6.394 14 C -0.593 4.593 15 H 0.088 0.912 16 C -0.176 4.176 17 N -0.555 5.555 18 Si 0.791 3.209 19 H -0.200 1.200 20 H -0.213 1.213 21 H -0.188 1.188 22 C 0.008 3.992 23 C -0.136 4.136 24 C -0.164 4.164 25 C -0.151 4.151 26 C -0.163 4.163 27 C -0.135 4.135 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.257 0.743 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.220 0.780 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.072 0.928 45 H 0.105 0.895 46 H 0.084 0.916 47 H 0.054 0.946 48 H 0.099 0.901 49 H 0.077 0.923 50 H 0.099 0.901 51 H 0.063 0.937 52 H 0.113 0.887 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.073 19.317 -15.226 25.335 hybrid contribution 0.248 -0.954 1.579 1.861 sum -5.825 18.363 -13.648 23.609 Atomic orbital electron populations 1.22858 0.79553 1.03524 1.00653 1.87556 1.21182 1.28815 1.95501 1.22671 0.91745 0.84571 1.01470 1.20898 0.94086 0.96927 0.94089 1.21304 0.97131 0.81382 0.97635 1.45238 1.53387 1.14198 1.24754 1.15886 0.80233 0.80220 0.83095 1.90811 1.44819 1.77926 1.40220 1.47822 1.50437 1.12473 1.26392 1.21993 0.93093 0.95095 0.90584 1.22591 0.97940 0.94181 0.99950 1.19867 0.83787 0.88637 0.88459 1.86091 1.23696 1.89818 1.39818 1.21796 1.02604 1.22477 1.12472 0.91167 1.25864 0.94802 0.97999 0.98980 1.69871 1.08635 1.43089 1.33918 0.85439 0.78783 0.78994 0.77705 1.19970 1.21270 1.18802 1.22599 0.99293 0.87832 0.89506 1.21466 0.95211 1.00101 0.96795 1.21595 0.95901 0.97900 1.01023 1.21504 0.99916 0.95001 0.98646 1.21594 0.95690 1.01017 0.97956 1.21453 0.95096 0.93131 1.03855 0.94245 0.92195 0.89249 0.93116 0.90373 0.93855 0.92944 0.74338 0.89844 0.91816 0.89616 0.89238 0.77981 0.92265 0.94119 0.94624 0.92845 0.89521 0.91635 0.94571 0.90142 0.92279 0.90066 0.93669 0.88687 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.41 -8.01 6.75 -148.98 -1.01 -9.02 16 3 C 0.07 1.14 4.80 71.98 0.35 1.48 16 4 C -0.06 -1.08 0.51 -52.18 -0.03 -1.10 16 5 C 0.15 4.25 3.87 86.38 0.33 4.58 16 6 N -0.71 -23.95 4.58 -478.53 -2.19 -26.14 16 7 C 0.70 31.71 8.49 179.05 1.52 33.23 16 8 O -0.65 -35.37 16.60 -3.98 -0.07 -35.44 16 9 N -0.63 -28.41 3.33 -829.71 -2.76 -31.17 16 10 C 0.11 4.10 6.15 86.73 0.53 4.63 16 11 C -0.11 -4.29 6.13 31.78 0.19 -4.10 16 12 C 0.23 11.71 0.87 -10.14 -0.01 11.70 16 13 O -0.59 -31.31 13.16 -148.98 -1.96 -33.27 16 14 C -0.56 -29.62 8.27 25.60 0.21 -29.41 16 15 H 0.07 3.59 7.79 -2.91 -0.02 3.57 16 16 C 0.02 1.31 5.29 84.65 0.45 1.76 16 17 N -0.92 -51.78 10.69 21.45 0.23 -51.55 16 18 Si 0.97 42.72 29.54 68.60 2.03 44.75 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 22 C 0.13 6.89 5.38 86.86 0.47 7.36 16 23 C -0.10 -1.76 4.42 30.60 0.14 -1.62 16 24 C -0.13 -2.50 5.65 30.60 0.17 -2.33 16 25 C -0.11 -1.72 5.92 30.59 0.18 -1.54 16 26 C -0.13 -1.92 5.65 30.58 0.17 -1.74 16 27 C -0.10 -1.30 4.73 30.58 0.14 -1.15 16 28 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.22 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.05 1.67 4.81 -2.39 -0.01 1.66 16 35 H 0.41 12.25 3.68 -92.71 -0.34 11.90 16 36 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 39 H 0.09 3.26 8.03 -2.38 -0.02 3.24 16 40 H 0.37 20.87 7.56 -74.06 -0.56 20.31 16 41 H 0.27 14.56 8.31 -92.70 -0.77 13.79 16 42 H 0.04 2.45 7.33 -2.39 -0.02 2.44 16 43 H 0.04 1.95 8.03 -2.39 -0.02 1.93 16 44 H 0.05 1.15 6.49 -2.39 -0.02 1.14 16 45 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.04 0.95 6.43 -2.39 -0.02 0.93 16 48 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.04 0.92 6.43 -2.39 -0.02 0.90 16 52 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 53 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -70.84 398.29 0.35 -70.49 By element: Atomic # 1 Polarization: 47.94 SS G_CDS: 0.00 Total: 47.94 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: 6.07 Total: 23.43 kcal Atomic # 7 Polarization: -104.15 SS G_CDS: -4.72 Total: -108.87 kcal Atomic # 8 Polarization: -74.70 SS G_CDS: -3.03 Total: -77.73 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -70.84 0.35 -70.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592022920.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.154 kcal (2) G-P(sol) polarization free energy of solvation -70.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds