Wall clock time and date at job start Sat Apr 11 2020 06:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45198 * 109.47013 * 2 1 4 4 C 1.34225 * 116.99945 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99970 * 179.97438 * 4 3 2 7 7 C 1.53006 * 109.46852 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.46958 * 180.02562 * 7 6 4 9 9 H 1.09005 * 109.49575 * 305.06658 * 8 7 6 10 10 C 1.53034 * 109.52529 * 65.14310 * 8 7 6 11 11 C 1.53043 * 109.54145 * 181.33115 * 10 8 7 12 12 C 1.53624 * 109.24277 * 298.52020 * 11 10 8 13 13 N 1.46919 * 108.54500 * 54.84911 * 12 11 10 14 14 C 1.34776 * 120.63049 * 126.36991 * 13 12 11 15 15 O 1.21284 * 120.00396 * 179.71447 * 14 13 12 16 16 C 1.50702 * 120.00114 * 359.72509 * 14 13 12 17 17 H 1.09008 * 109.46812 * 319.99544 * 16 14 13 18 18 N 1.46894 * 109.47159 * 200.00163 * 16 14 13 19 19 C 1.53001 * 109.47337 * 79.99170 * 16 14 13 20 20 C 1.53000 * 109.46886 * 185.00101 * 19 16 14 21 21 C 1.50703 * 109.46912 * 180.02562 * 20 19 16 22 22 H 1.07996 * 119.99751 * 0.02562 * 21 20 19 23 23 C 1.37877 * 120.00001 * 180.02562 * 21 20 19 24 24 N 1.31512 * 119.99923 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 120.00006 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47093 * 90.00088 * 25 23 21 27 27 H 1.48495 * 109.46891 * 210.00496 * 25 23 21 28 28 H 1.48504 * 109.47189 * 330.00185 * 25 23 21 29 29 C 1.46931 * 118.74174 * 306.09620 * 13 12 11 30 30 H 1.09005 * 109.46935 * 59.99944 * 1 2 3 31 31 H 1.08999 * 109.47327 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47251 * 299.99987 * 1 2 3 33 33 H 1.09005 * 109.47303 * 240.00448 * 2 1 3 34 34 H 1.08998 * 109.47249 * 120.00102 * 2 1 3 35 35 H 1.09001 * 109.46736 * 60.00409 * 6 4 3 36 36 H 1.08998 * 109.47283 * 300.00062 * 6 4 3 37 37 H 1.09001 * 109.47120 * 60.00639 * 7 6 4 38 38 H 1.08998 * 109.47224 * 300.00094 * 7 6 4 39 39 H 1.09002 * 109.46537 * 301.35796 * 10 8 7 40 40 H 1.08999 * 109.46032 * 61.32849 * 10 8 7 41 41 H 1.09009 * 109.49091 * 58.58709 * 11 10 8 42 42 H 1.08993 * 109.50093 * 178.64918 * 11 10 8 43 43 H 1.09003 * 109.73295 * 295.11007 * 12 11 10 44 44 H 1.08997 * 109.66275 * 174.54713 * 12 11 10 45 45 H 1.00904 * 110.99917 * 176.04417 * 18 16 14 46 46 H 1.00901 * 110.99935 * 299.98820 * 18 16 14 47 47 H 1.09001 * 109.46652 * 65.00446 * 19 16 14 48 48 H 1.08992 * 109.47514 * 305.00536 * 19 16 14 49 49 H 1.09002 * 109.47398 * 300.00496 * 20 19 16 50 50 H 1.09001 * 109.47194 * 60.00677 * 20 19 16 51 51 H 0.97000 * 119.99684 * 180.02562 * 24 23 21 52 52 H 1.08995 * 109.58999 * 173.64827 * 29 13 12 53 53 H 1.09004 * 109.58143 * 294.07473 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 0.0001 8 6 6.0334 4.2712 0.0002 9 1 5.6270 4.8330 -0.8408 10 6 5.6685 4.9755 1.3089 11 6 6.2251 6.4011 1.2954 12 6 7.7565 6.3458 1.1870 13 7 8.1128 5.5480 0.0059 14 6 8.9373 6.0468 -0.9364 15 8 9.2280 5.3764 -1.9044 16 6 9.4982 7.4376 -0.7873 17 1 8.7263 8.1007 -0.3963 18 7 9.9470 7.9277 -2.0973 19 6 10.6832 7.4086 0.1800 20 6 11.1739 8.8364 0.4283 21 6 12.3416 8.8078 1.3806 22 1 12.6983 7.8655 1.7694 23 6 12.9544 9.9846 1.7554 24 7 13.9738 9.9596 2.5860 25 14 12.3378 11.6144 1.0823 26 1 11.2938 12.1602 1.9864 27 1 13.4682 12.5735 0.9955 28 1 11.7613 11.4051 -0.2702 29 6 7.5582 4.1938 -0.1256 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.5843 3.4700 0.8896 36 1 3.5851 3.4691 -0.8904 37 1 5.7846 2.3249 -0.8897 38 1 5.7845 2.3255 0.8903 39 1 4.5840 5.0100 1.4127 40 1 6.0963 4.4269 2.1481 41 1 5.8169 6.9429 0.4421 42 1 5.9444 6.9100 2.2175 43 1 8.1722 5.8809 2.0810 44 1 8.1532 7.3553 1.0795 45 1 10.2680 8.8823 -2.0357 46 1 10.6633 7.3295 -2.4810 47 1 11.4904 6.8170 -0.2520 48 1 10.3709 6.9624 1.1241 49 1 11.4862 9.2826 -0.5158 50 1 10.3667 9.4280 0.8604 51 1 14.4047 10.7876 2.8500 52 1 7.8241 3.7829 -1.0995 53 1 7.9581 3.5570 0.6635 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593909864.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:30 Heat of formation + Delta-G solvation = -174.406630 kcal Electronic energy + Delta-G solvation = -29896.725672 eV Core-core repulsion = 25766.200574 eV Total energy + Delta-G solvation = -4130.525098 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.63361 -41.34680 -39.03692 -37.76963 -37.16768 -35.63288 -34.80381 -33.03783 -32.65143 -32.08397 -31.21509 -28.60881 -26.69250 -26.42381 -24.75179 -23.86473 -23.07312 -22.23610 -21.67322 -20.90430 -19.95730 -19.04573 -18.72748 -18.45752 -17.80458 -17.37435 -17.07154 -16.29700 -16.21437 -16.00844 -15.85971 -15.65799 -15.30534 -15.04354 -14.96649 -14.65140 -14.62087 -14.33978 -14.22461 -13.92885 -13.80235 -13.64154 -13.49544 -13.23185 -12.99211 -12.89202 -12.79013 -12.67462 -12.49997 -12.29723 -12.11043 -11.92271 -11.84619 -11.71555 -11.67769 -11.59260 -11.53896 -11.50749 -11.40540 -11.21412 -10.76510 -10.66293 -9.71046 -9.58814 -8.29089 -6.34919 1.17553 1.38737 1.41567 1.52400 1.58006 1.68268 1.98587 2.37116 3.06574 3.45985 3.61995 3.67076 3.74225 3.80454 3.92480 3.98728 4.02007 4.07267 4.11140 4.15412 4.21867 4.31553 4.34834 4.39049 4.45964 4.56941 4.60467 4.62216 4.69585 4.75655 4.86770 4.88434 4.89710 4.91639 4.93313 4.96557 5.10647 5.15171 5.19624 5.25026 5.32565 5.36121 5.45519 5.49117 5.52645 5.58243 5.62830 6.04060 6.25531 6.38434 6.47643 6.72323 6.73399 7.16402 7.30056 8.87720 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026437 B = 0.001798 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.862869 B =15572.226034 C =15882.761071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 O -0.363 6.363 4 C 0.460 3.540 5 O -0.546 6.546 6 C -0.107 4.107 7 C -0.096 4.096 8 C -0.087 4.087 9 H 0.078 0.922 10 C -0.116 4.116 11 C -0.129 4.129 12 C 0.091 3.909 13 N -0.606 5.606 14 C 0.522 3.478 15 O -0.577 6.577 16 C 0.081 3.919 17 H 0.120 0.880 18 N -0.830 5.830 19 C -0.118 4.118 20 C -0.004 4.004 21 C -0.535 4.535 22 H 0.025 0.975 23 C 0.004 3.996 24 N -0.953 5.953 25 Si 0.953 3.047 26 H -0.262 1.262 27 H -0.290 1.290 28 H -0.239 1.239 29 C 0.112 3.888 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.134 0.866 36 H 0.125 0.875 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.355 0.645 46 H 0.344 0.656 47 H 0.038 0.962 48 H 0.064 0.936 49 H 0.024 0.976 50 H 0.033 0.967 51 H 0.266 0.734 52 H 0.068 0.932 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.922 -12.790 -3.131 33.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.280 6.280 4 C 0.305 3.695 5 O -0.436 6.436 6 C -0.144 4.144 7 C -0.134 4.134 8 C -0.106 4.106 9 H 0.096 0.904 10 C -0.153 4.153 11 C -0.167 4.167 12 C -0.031 4.031 13 N -0.339 5.339 14 C 0.310 3.690 15 O -0.456 6.456 16 C -0.034 4.034 17 H 0.138 0.862 18 N -0.362 5.362 19 C -0.158 4.158 20 C -0.042 4.042 21 C -0.573 4.573 22 H 0.043 0.957 23 C -0.193 4.193 24 N -0.593 5.593 25 Si 0.776 3.224 26 H -0.187 1.187 27 H -0.217 1.217 28 H -0.162 1.162 29 C -0.011 4.011 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.152 0.848 36 H 0.143 0.857 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.115 0.885 43 H 0.094 0.906 44 H 0.107 0.893 45 H 0.170 0.830 46 H 0.157 0.843 47 H 0.056 0.944 48 H 0.083 0.917 49 H 0.043 0.957 50 H 0.051 0.949 51 H 0.075 0.925 52 H 0.087 0.913 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -31.227 -13.479 -3.795 34.223 hybrid contribution 1.849 0.223 0.517 1.932 sum -29.379 -13.256 -3.278 32.397 Atomic orbital electron populations 1.21822 0.90509 1.04270 1.03785 1.23243 0.97055 0.79496 1.02324 1.86517 1.24421 1.33409 1.83688 1.24429 0.80427 0.93686 0.70985 1.90677 1.61141 1.44755 1.47021 1.21543 0.95393 0.89286 1.08132 1.21297 0.92871 0.96024 1.03231 1.21399 0.93144 0.96062 1.00018 0.90370 1.21700 1.02450 0.94966 0.96206 1.21987 0.92832 0.98012 1.03846 1.22217 0.97562 0.96340 0.86952 1.48117 1.46720 1.16625 1.22435 1.20826 0.77891 0.88715 0.81521 1.90612 1.60864 1.61793 1.32366 1.21464 0.97860 0.93357 0.90707 0.86238 1.58771 1.47032 1.07867 1.22528 1.22030 0.96141 0.98844 0.98809 1.19489 0.95124 0.93670 0.95876 1.21422 1.15373 0.93283 1.27251 0.95701 1.26067 0.94629 1.03801 0.94773 1.70084 1.24236 1.29033 1.35967 0.85616 0.78193 0.77824 0.80766 1.18704 1.21652 1.16176 1.21666 0.94235 0.82750 1.02403 0.91261 0.88507 0.91104 0.91712 0.91495 0.84808 0.85714 0.92261 0.91127 0.88785 0.91170 0.91258 0.88464 0.90585 0.89312 0.83021 0.84318 0.94350 0.91732 0.95741 0.94898 0.92536 0.91318 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.29 71.98 0.74 -0.21 16 2 C 0.05 0.64 6.19 71.98 0.45 1.08 16 3 O -0.36 -5.44 10.22 -51.37 -0.53 -5.97 16 4 C 0.46 7.61 7.96 71.24 0.57 8.18 16 5 O -0.55 -12.97 15.73 21.97 0.35 -12.63 16 6 C -0.11 -1.05 5.57 29.85 0.17 -0.89 16 7 C -0.10 -1.33 3.98 30.60 0.12 -1.20 16 8 C -0.09 -1.25 2.33 -10.72 -0.03 -1.28 16 9 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 10 C -0.12 -1.22 4.96 30.62 0.15 -1.07 16 11 C -0.13 -1.64 6.10 30.82 0.19 -1.45 16 12 C 0.09 1.77 5.61 86.51 0.49 2.25 16 13 N -0.61 -15.14 2.97 -818.07 -2.43 -17.57 16 14 C 0.52 16.85 6.95 87.66 0.61 17.46 16 15 O -0.58 -22.68 15.66 -3.04 -0.05 -22.73 16 16 C 0.08 2.51 2.35 44.17 0.10 2.61 16 17 H 0.12 3.18 6.55 -2.38 -0.02 3.16 16 18 N -0.83 -26.02 8.94 -171.80 -1.54 -27.55 16 19 C -0.12 -4.40 4.54 30.59 0.14 -4.26 16 20 C 0.00 -0.18 3.81 29.85 0.11 -0.06 16 21 C -0.54 -29.90 9.66 25.60 0.25 -29.65 16 22 H 0.02 1.56 7.99 -2.91 -0.02 1.54 16 23 C 0.00 0.23 5.47 84.65 0.46 0.69 16 24 N -0.95 -58.95 13.96 21.45 0.30 -58.65 16 25 Si 0.95 42.01 27.47 68.60 1.88 43.90 16 26 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 27 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 28 H -0.24 -9.43 6.54 99.48 0.65 -8.78 16 29 C 0.11 2.45 5.71 86.36 0.49 2.95 16 30 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.06 0.84 8.13 -2.38 -0.02 0.82 16 34 H 0.07 0.84 8.13 -2.39 -0.02 0.82 16 35 H 0.13 0.68 6.54 -2.39 -0.02 0.66 16 36 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 38 H 0.07 1.06 8.10 -2.39 -0.02 1.04 16 39 H 0.09 0.55 6.51 -2.39 -0.02 0.54 16 40 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.09 1.82 5.17 -2.39 -0.01 1.81 16 45 H 0.35 10.37 7.55 -89.69 -0.68 9.70 16 46 H 0.34 11.42 8.58 -89.69 -0.77 10.65 16 47 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.06 2.36 7.18 -2.39 -0.02 2.34 16 49 H 0.02 1.01 5.93 -2.39 -0.01 1.00 16 50 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 51 H 0.27 15.35 8.31 -92.71 -0.77 14.57 16 52 H 0.07 1.85 7.01 -2.39 -0.02 1.83 16 53 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 Total: -1.00 -76.80 414.09 2.41 -74.39 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: -0.59 Total: 31.66 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 5.01 Total: -4.85 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -3.66 Total: -103.77 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -0.23 Total: -41.33 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 1.88 Total: 43.90 kcal Total: -76.80 2.41 -74.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593909864.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.015 kcal (2) G-P(sol) polarization free energy of solvation -76.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds