Wall clock time and date at job start Sat Apr 11 2020 06:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42908 * 113.99945 * 2 1 4 4 H 1.08998 * 109.46593 * 31.75010 * 3 2 1 5 5 C 1.52998 * 109.46977 * 151.75034 * 3 2 1 6 6 N 1.46496 * 109.47351 * 300.00120 * 5 3 2 7 7 C 1.34774 * 119.99979 * 180.02562 * 6 5 3 8 8 O 1.21345 * 119.99992 * 0.02562 * 7 6 5 9 9 C 1.49454 * 120.00084 * 179.97438 * 7 6 5 10 10 O 1.21353 * 119.99994 * 359.97438 * 9 7 6 11 11 N 1.34776 * 119.99854 * 180.02562 * 9 7 6 12 12 C 1.46496 * 119.99749 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.47351 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47683 * 179.97438 * 13 12 11 15 15 C 1.50692 * 109.47261 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00421 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99740 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99920 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00347 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47184 * 89.99414 * 19 17 15 21 21 H 1.48498 * 109.47163 * 209.99992 * 19 17 15 22 22 H 1.48499 * 109.46738 * 329.99618 * 19 17 15 23 23 C 1.52995 * 109.46934 * 271.75229 * 3 2 1 24 24 C 1.52998 * 109.47497 * 296.40809 * 23 3 2 25 25 C 1.52995 * 109.47497 * 180.02562 * 24 23 3 26 26 C 1.52998 * 109.47018 * 59.99812 * 25 24 23 27 27 C 1.53000 * 109.47500 * 300.00415 * 26 25 24 28 28 C 1.52998 * 109.47171 * 59.99436 * 27 26 25 29 29 H 1.09002 * 109.47137 * 184.92341 * 1 2 3 30 30 H 1.09003 * 109.47041 * 304.92348 * 1 2 3 31 31 H 1.08999 * 109.47094 * 64.92300 * 1 2 3 32 32 H 1.09001 * 109.46627 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.46771 * 60.00321 * 5 3 2 34 34 H 0.97001 * 120.00159 * 0.02562 * 6 5 3 35 35 H 0.96995 * 120.00129 * 359.97438 * 11 9 7 36 36 H 1.09000 * 109.47347 * 299.99403 * 12 11 9 37 37 H 1.09001 * 109.47563 * 59.99751 * 12 11 9 38 38 H 1.09001 * 109.47233 * 299.99938 * 13 12 11 39 39 H 1.09001 * 109.47101 * 59.99865 * 13 12 11 40 40 H 1.09001 * 109.46919 * 300.00355 * 14 13 12 41 41 H 1.09001 * 109.46778 * 59.99893 * 14 13 12 42 42 H 0.97003 * 120.00266 * 180.02562 * 18 17 15 43 43 H 1.09008 * 109.47323 * 56.41426 * 23 3 2 44 44 H 1.08996 * 109.46975 * 300.00490 * 24 23 3 45 45 H 1.09003 * 109.46969 * 60.00249 * 24 23 3 46 46 H 1.08996 * 109.47408 * 300.00225 * 25 24 23 47 47 H 1.09000 * 109.47170 * 180.02562 * 25 24 23 48 48 H 1.09000 * 109.47466 * 179.97438 * 26 25 24 49 49 H 1.09004 * 109.47074 * 60.00509 * 26 25 24 50 50 H 1.08996 * 109.46788 * 299.99503 * 27 26 25 51 51 H 1.09003 * 109.47330 * 179.97438 * 27 26 25 52 52 H 1.09000 * 109.47018 * 180.02562 * 28 27 26 53 53 H 1.09004 * 109.46584 * 60.00407 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3596 1.9928 0.5408 5 6 3.3785 1.2546 0.6828 6 7 3.2185 0.7913 2.0633 7 6 4.2970 0.6680 2.8620 8 8 5.4006 0.9411 2.4377 9 6 4.1337 0.1959 4.2706 10 8 3.0299 -0.0760 4.6953 11 7 5.2122 0.0730 5.0694 12 6 5.0522 -0.3902 6.4499 13 6 6.4204 -0.4406 7.1329 14 6 6.2532 -0.9238 8.5749 15 6 7.6009 -0.9740 9.2473 16 1 8.4879 -0.6893 8.7010 17 6 7.7014 -1.3824 10.5604 18 7 8.8775 -1.4257 11.1474 19 14 6.1672 -1.8743 11.5057 20 1 5.9236 -3.3287 11.3317 21 1 6.3561 -1.5729 12.9474 22 1 5.0021 -1.1120 10.9892 23 6 2.1773 1.7893 -1.4418 24 6 3.1608 0.8755 -2.1757 25 6 3.3284 1.3597 -3.6173 26 6 3.8673 2.7916 -3.6150 27 6 2.8839 3.7055 -2.8810 28 6 2.7163 3.2213 -1.4394 29 1 -0.3633 -1.0239 0.0882 30 1 -0.3633 0.5883 0.8426 31 1 -0.3633 0.4356 -0.9308 32 1 3.8220 2.2503 0.6823 33 1 4.0290 0.5673 0.1419 34 1 2.3363 0.5733 2.4025 35 1 6.0944 0.2907 4.7301 36 1 4.4010 0.2966 6.9906 37 1 4.6097 -1.3864 6.4500 38 1 7.0713 -1.1277 6.5922 39 1 6.8633 0.5554 7.1329 40 1 5.6025 -0.2364 9.1153 41 1 5.8101 -1.9197 8.5753 42 1 8.9483 -1.7134 12.0710 43 1 1.2120 1.7650 -1.9475 44 1 4.1260 0.8999 -1.6701 45 1 2.7770 -0.1447 -2.1770 46 1 2.3632 1.3356 -4.1232 47 1 4.0286 0.7083 -4.1403 48 1 3.9871 3.1365 -4.6420 49 1 4.8325 2.8157 -3.1091 50 1 1.9188 3.6815 -3.3870 51 1 3.2681 4.7256 -2.8790 52 1 2.0153 3.8721 -0.9167 53 1 3.6815 3.2454 -0.9336 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597251380.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:00 Heat of formation + Delta-G solvation = -176.868732 kcal Electronic energy + Delta-G solvation = -29470.167899 eV Core-core repulsion = 25339.536037 eV Total energy + Delta-G solvation = -4130.631862 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.79045 -40.64330 -39.53507 -38.15439 -37.22734 -35.97667 -35.10514 -33.31025 -33.06332 -31.62166 -29.65994 -29.02836 -27.36698 -26.00597 -24.81967 -23.58710 -23.45774 -22.28206 -22.04781 -21.20505 -20.38455 -19.47580 -18.85151 -18.05875 -17.65901 -17.15958 -17.04420 -16.70671 -16.51096 -16.19881 -16.10928 -15.59224 -15.39925 -15.25141 -14.97171 -14.89134 -14.77557 -14.72022 -14.37638 -13.92168 -13.81172 -13.60635 -13.32598 -13.18748 -13.01115 -12.91755 -12.73743 -12.69768 -12.62184 -12.20672 -11.96231 -11.90480 -11.78003 -11.75991 -11.60426 -11.43469 -11.33381 -11.11339 -10.87679 -10.79236 -10.75120 -10.40185 -10.34710 -10.25829 -8.28084 -6.32586 0.29927 1.27390 1.38772 1.40269 1.52114 2.09773 2.37803 2.58491 2.72935 3.07640 3.39342 3.55545 3.74125 3.81839 3.96713 4.02002 4.07740 4.17545 4.32408 4.40037 4.42767 4.44264 4.48010 4.49791 4.56698 4.62879 4.65763 4.68431 4.77297 4.81172 4.82610 4.86526 4.93005 5.00726 5.02033 5.11862 5.17856 5.20196 5.26123 5.27899 5.31837 5.41079 5.46497 5.47003 5.55633 5.59585 5.65291 5.87514 6.20655 6.28386 6.30283 6.67781 6.75780 6.89429 7.32140 8.88447 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.024094 B = 0.001643 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.812776 B =17041.908031 C =17774.921078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.398 6.398 3 C 0.085 3.915 4 H 0.085 0.915 5 C 0.115 3.885 6 N -0.683 5.683 7 C 0.511 3.489 8 O -0.542 6.542 9 C 0.504 3.496 10 O -0.545 6.545 11 N -0.688 5.688 12 C 0.124 3.876 13 C -0.105 4.105 14 C -0.011 4.011 15 C -0.534 4.534 16 H 0.034 0.966 17 C 0.003 3.997 18 N -0.951 5.951 19 Si 0.950 3.050 20 H -0.267 1.267 21 H -0.286 1.286 22 H -0.244 1.244 23 C -0.095 4.095 24 C -0.114 4.114 25 C -0.117 4.117 26 C -0.123 4.123 27 C -0.116 4.116 28 C -0.119 4.119 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.418 0.582 35 H 0.418 0.582 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.026 0.974 41 H 0.024 0.976 42 H 0.266 0.734 43 H 0.085 0.915 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.065 0.935 49 H 0.056 0.944 50 H 0.066 0.934 51 H 0.066 0.934 52 H 0.074 0.926 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.833 9.467 -33.023 40.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.317 6.317 3 C 0.027 3.973 4 H 0.103 0.897 5 C -0.007 4.007 6 N -0.336 5.336 7 C 0.292 3.708 8 O -0.419 6.419 9 C 0.284 3.716 10 O -0.424 6.424 11 N -0.341 5.341 12 C 0.001 3.999 13 C -0.143 4.143 14 C -0.049 4.049 15 C -0.572 4.572 16 H 0.053 0.947 17 C -0.194 4.194 18 N -0.592 5.592 19 Si 0.774 3.226 20 H -0.192 1.192 21 H -0.212 1.212 22 H -0.167 1.167 23 C -0.114 4.114 24 C -0.151 4.151 25 C -0.155 4.155 26 C -0.160 4.160 27 C -0.153 4.153 28 C -0.157 4.157 29 H 0.108 0.892 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.256 0.744 35 H 0.255 0.745 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.044 0.956 41 H 0.042 0.958 42 H 0.075 0.925 43 H 0.103 0.897 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.083 0.917 49 H 0.075 0.925 50 H 0.084 0.916 51 H 0.085 0.915 52 H 0.092 0.908 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.642 9.266 -32.879 39.912 hybrid contribution -0.032 -0.243 0.806 0.843 sum -20.674 9.023 -32.073 39.211 Atomic orbital electron populations 1.22978 0.79588 1.03639 1.01026 1.87954 1.21202 1.27433 1.95089 1.22437 0.93136 0.85517 0.96185 0.89725 1.21914 0.97957 1.01342 0.79486 1.45637 1.10168 1.65012 1.12773 1.19991 0.85169 0.79178 0.86502 1.90764 1.25611 1.49835 1.75724 1.20248 0.84976 0.79360 0.87001 1.90742 1.25511 1.50175 1.75937 1.45891 1.10581 1.64615 1.12968 1.21554 0.98502 1.00260 0.79571 1.21527 0.94875 1.01834 0.96049 1.19459 0.95332 0.96799 0.93276 1.21482 0.93957 1.44351 0.97380 0.94736 1.26028 0.99427 0.95076 0.98854 1.70070 1.25990 1.49663 1.13491 0.85654 0.80166 0.79493 0.77329 1.19247 1.21156 1.16686 1.21533 1.00405 0.95472 0.94016 1.21560 0.98919 0.98889 0.95753 1.21511 1.01271 0.96435 0.96249 1.21566 0.98828 0.95055 1.00576 1.21493 0.99761 0.98955 0.95134 1.21672 1.01552 0.94793 0.97664 0.89161 0.92956 0.92856 0.88645 0.90683 0.74447 0.74452 0.90837 0.90934 0.91861 0.91778 0.95602 0.95800 0.92537 0.89674 0.92463 0.92181 0.91747 0.92206 0.91650 0.92539 0.91552 0.91511 0.90762 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.86 113.37 1.23 1.44 16 2 O -0.40 -5.52 9.57 -148.98 -1.43 -6.94 16 3 C 0.09 0.94 1.97 30.59 0.06 1.00 16 4 H 0.08 0.70 7.74 -2.39 -0.02 0.68 16 5 C 0.12 1.77 4.65 86.38 0.40 2.17 16 6 N -0.68 -13.16 5.44 -464.42 -2.53 -15.68 16 7 C 0.51 12.82 7.89 87.27 0.69 13.51 16 8 O -0.54 -15.65 16.48 -3.23 -0.05 -15.70 16 9 C 0.50 14.08 7.89 87.27 0.69 14.76 16 10 O -0.55 -17.15 16.48 -3.26 -0.05 -17.21 16 11 N -0.69 -19.12 5.55 -464.41 -2.58 -21.69 16 12 C 0.12 3.80 5.67 86.38 0.49 4.29 16 13 C -0.10 -3.80 5.27 30.59 0.16 -3.64 16 14 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 15 C -0.53 -30.42 9.66 25.60 0.25 -30.17 16 16 H 0.03 2.16 7.99 -2.91 -0.02 2.13 16 17 C 0.00 0.17 5.47 84.66 0.46 0.63 16 18 N -0.95 -59.74 13.96 21.45 0.30 -59.44 16 19 Si 0.95 43.97 27.47 68.60 1.88 45.86 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 21 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 22 H -0.24 -10.36 6.54 99.48 0.65 -9.71 16 23 C -0.10 -0.87 2.15 -10.80 -0.02 -0.89 16 24 C -0.11 -1.31 4.64 30.59 0.14 -1.17 16 25 C -0.12 -1.15 5.92 30.59 0.18 -0.97 16 26 C -0.12 -1.12 5.92 30.59 0.18 -0.94 16 27 C -0.12 -0.90 5.92 30.59 0.18 -0.72 16 28 C -0.12 -0.96 4.93 30.59 0.15 -0.81 16 29 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.37 7.97 -2.39 -0.02 0.35 16 31 H 0.05 0.34 7.76 -2.39 -0.02 0.32 16 32 H 0.10 1.36 6.52 -2.39 -0.02 1.34 16 33 H 0.07 1.35 6.36 -2.39 -0.02 1.33 16 34 H 0.42 7.42 7.82 -92.71 -0.72 6.69 16 35 H 0.42 10.77 7.94 -92.71 -0.74 10.04 16 36 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.03 1.13 7.20 -2.39 -0.02 1.12 16 41 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 42 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 43 H 0.08 0.69 7.75 -2.38 -0.02 0.67 16 44 H 0.06 0.77 6.36 -2.39 -0.02 0.76 16 45 H 0.06 0.82 7.78 -2.39 -0.02 0.80 16 46 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 51 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 52 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 53 H 0.06 0.61 6.52 -2.39 -0.02 0.59 16 Total: -1.00 -70.29 417.86 0.30 -69.99 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -0.61 Total: 22.69 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 5.37 Total: -1.86 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -4.80 Total: -96.82 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -1.53 Total: -39.85 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.88 Total: 45.86 kcal Total: -70.29 0.30 -69.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597251380.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.878 kcal (2) G-P(sol) polarization free energy of solvation -70.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds