Wall clock time and date at job start Sat Apr 11 2020 06:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46894 * 111.00799 * 2 1 4 4 C 1.46898 * 110.99699 * 123.95933 * 2 1 3 5 5 C 1.52998 * 109.47562 * 66.03967 * 4 2 1 6 6 C 1.53000 * 109.47484 * 179.97438 * 5 4 2 7 7 N 1.46494 * 109.47257 * 180.02562 * 6 5 4 8 8 C 1.46500 * 120.00020 * 90.00257 * 7 6 5 9 9 C 1.50706 * 109.46949 * 89.99910 * 8 7 6 10 10 H 1.07995 * 120.00167 * 359.72205 * 9 8 7 11 11 C 1.37879 * 119.99394 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00338 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99424 * 180.02562 * 11 9 8 14 14 H 1.48490 * 109.47405 * 60.00219 * 13 11 9 15 15 H 1.48503 * 109.46845 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47399 * 299.99813 * 13 11 9 17 17 C 1.34777 * 119.99857 * 269.99930 * 7 6 5 18 18 O 1.21280 * 120.00078 * 0.02562 * 17 7 6 19 19 C 1.50704 * 119.99819 * 180.02562 * 17 7 6 20 20 H 1.09003 * 110.04125 * 60.01210 * 19 17 7 21 21 C 1.54009 * 110.06034 * 298.54661 * 19 17 7 22 22 C 1.54314 * 106.57975 * 240.34092 * 21 19 17 23 23 C 1.55005 * 104.26034 * 23.48947 * 22 21 19 24 24 C 1.53651 * 110.05829 * 181.52470 * 19 17 7 25 25 O 1.43058 * 110.65296 * 337.34347 * 24 19 17 26 26 C 1.44954 * 104.60724 * 213.71651 * 25 24 19 27 27 C 1.54968 * 101.82480 * 35.40635 * 26 25 24 28 28 O 1.42691 * 110.85247 * 215.48167 * 24 19 17 29 29 H 1.09000 * 109.46741 * 296.05072 * 1 2 3 30 30 H 1.09003 * 109.46650 * 56.04023 * 1 2 3 31 31 H 1.08995 * 109.47892 * 176.04315 * 1 2 3 32 32 H 1.08994 * 109.47909 * 183.95418 * 3 2 1 33 33 H 1.08999 * 109.46889 * 303.95923 * 3 2 1 34 34 H 1.09006 * 109.46793 * 63.94699 * 3 2 1 35 35 H 1.09001 * 109.46921 * 306.04145 * 4 2 1 36 36 H 1.09005 * 109.47246 * 186.04073 * 4 2 1 37 37 H 1.09001 * 109.46857 * 60.00140 * 5 4 2 38 38 H 1.08999 * 109.47139 * 299.99933 * 5 4 2 39 39 H 1.09000 * 109.46784 * 59.99691 * 6 5 4 40 40 H 1.09002 * 109.47475 * 300.00602 * 6 5 4 41 41 H 1.09000 * 109.47175 * 329.99936 * 8 7 6 42 42 H 1.09001 * 109.47297 * 209.99443 * 8 7 6 43 43 H 0.96996 * 119.99730 * 179.97438 * 12 11 9 44 44 H 1.08994 * 110.03655 * 359.62385 * 21 19 17 45 45 H 1.09007 * 110.03522 * 121.01417 * 21 19 17 46 46 H 1.09001 * 110.47382 * 142.18153 * 22 21 19 47 47 H 1.08997 * 110.47457 * 264.79845 * 22 21 19 48 48 H 1.08998 * 110.75951 * 80.98222 * 23 22 21 49 49 H 1.08991 * 110.76108 * 204.37063 * 23 22 21 50 50 H 1.09004 * 110.96139 * 277.27281 * 26 25 24 51 51 H 1.09005 * 110.98658 * 153.55052 * 26 25 24 52 52 H 1.08997 * 110.69120 * 206.41724 * 27 26 25 53 53 H 1.09004 * 110.83881 * 83.29528 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 1.9953 -0.7661 1.1375 5 6 1.6312 -2.2427 0.9703 6 6 2.1800 -3.0407 2.1548 7 7 1.8319 -4.4546 1.9943 8 6 2.7402 -5.3563 1.2814 9 6 3.7116 -5.9666 2.2588 10 1 3.6606 -5.7051 3.3054 11 6 4.6687 -6.8547 1.8158 12 7 4.7343 -7.1688 0.5405 13 14 5.8722 -7.6117 3.0274 14 1 5.1234 -8.3755 4.0573 15 1 6.7930 -8.5256 2.3047 16 1 6.6576 -6.5353 3.6830 17 6 0.6760 -4.9258 2.5025 18 8 -0.0761 -4.1793 3.0923 19 6 0.3181 -6.3805 2.3379 20 1 1.0780 -7.0072 2.8048 21 6 0.1924 -6.7277 0.8428 22 6 -1.2552 -7.2155 0.6242 23 6 -2.0526 -6.5801 1.7917 24 6 -1.0558 -6.6596 2.9666 25 8 -1.3704 -5.6707 3.9513 26 6 -2.1297 -6.3858 4.9579 27 6 -1.4396 -7.7733 4.9501 28 8 -1.0883 -7.9561 3.5616 29 1 -0.3633 0.4513 0.9233 30 1 -0.3633 0.5741 -0.8524 31 1 -0.3635 -1.0251 -0.0709 32 1 3.0829 1.3431 -0.0709 33 1 1.5899 1.9162 -0.8524 34 1 1.7044 1.8723 0.9233 35 1 1.5610 -0.3873 2.0627 36 1 3.0797 -0.6613 1.1756 37 1 2.0656 -2.6214 0.0451 38 1 0.5470 -2.3475 0.9323 39 1 1.7461 -2.6620 3.0802 40 1 3.2643 -2.9358 2.1924 41 1 3.2896 -4.7954 0.5254 42 1 2.1641 -6.1467 0.8003 43 1 5.4079 -7.7933 0.2289 44 1 0.3837 -5.8424 0.2364 45 1 0.8969 -7.5177 0.5823 46 1 -1.6359 -6.8625 -0.3342 47 1 -1.3031 -8.3031 0.6773 48 1 -2.3046 -5.5434 1.5682 49 1 -2.9504 -7.1594 2.0067 50 1 -3.1775 -6.4699 4.6693 51 1 -2.0330 -5.9077 5.9327 52 1 -2.1313 -8.5493 5.2778 53 1 -0.5469 -7.7659 5.5756 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807025332.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:47 Heat of formation + Delta-G solvation = -131.325100 kcal Electronic energy + Delta-G solvation = -32510.511460 eV Core-core repulsion = 28381.854518 eV Total energy + Delta-G solvation = -4128.656942 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.11092 -40.45730 -38.66003 -37.22350 -36.79718 -35.87970 -34.73348 -33.05418 -30.76619 -30.32370 -29.18612 -28.49987 -27.66752 -26.93910 -24.92474 -24.18120 -23.92109 -21.97545 -21.91888 -21.64792 -19.85489 -18.68871 -18.27768 -17.75256 -17.24374 -17.00079 -16.69826 -16.49222 -16.43975 -16.09161 -16.01620 -15.90508 -15.24474 -15.06974 -14.89098 -14.72327 -14.36010 -14.08144 -13.75648 -13.62631 -13.46171 -13.33191 -13.24526 -13.21215 -13.15832 -12.92434 -12.84396 -12.69152 -12.58910 -12.44766 -12.35461 -12.20196 -12.13176 -12.05740 -11.87392 -11.65768 -11.59218 -11.46200 -11.02252 -10.63998 -10.50687 -10.26337 -9.38286 -9.32847 -8.18144 -6.31986 1.40559 1.41135 1.48870 1.85003 2.18356 2.40781 2.63818 2.99654 3.07782 3.11163 3.45617 3.55061 3.70750 3.82986 3.98578 4.07241 4.10243 4.16928 4.22564 4.23888 4.38008 4.41584 4.44704 4.48940 4.51815 4.54134 4.60896 4.62930 4.65995 4.69201 4.74332 4.76840 4.79814 4.87766 4.93330 4.98442 5.00322 5.00530 5.04974 5.12085 5.15210 5.16142 5.24131 5.33051 5.36602 5.68343 5.90918 6.03831 6.10409 6.11476 6.27999 6.60598 6.84895 7.35163 7.49520 8.86677 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.006903 B = 0.005083 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4055.062496 B = 5507.383583 C = 8292.764610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.564 5.564 3 C 0.025 3.975 4 C 0.067 3.933 5 C -0.110 4.110 6 C 0.124 3.876 7 N -0.600 5.600 8 C 0.240 3.760 9 C -0.548 4.548 10 H 0.045 0.955 11 C 0.026 3.974 12 N -0.915 5.915 13 Si 0.950 3.050 14 H -0.275 1.275 15 H -0.278 1.278 16 H -0.273 1.273 17 C 0.522 3.478 18 O -0.555 6.555 19 C -0.114 4.114 20 H 0.086 0.914 21 C -0.103 4.103 22 C -0.111 4.111 23 C -0.131 4.131 24 C 0.264 3.736 25 O -0.347 6.347 26 C -0.003 4.003 27 C 0.014 3.986 28 O -0.386 6.386 29 H 0.026 0.974 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.028 0.972 35 H 0.035 0.965 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.016 0.984 42 H 0.052 0.948 43 H 0.268 0.732 44 H 0.062 0.938 45 H 0.071 0.929 46 H 0.091 0.909 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.095 0.905 50 H 0.091 0.909 51 H 0.117 0.883 52 H 0.132 0.868 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.793 5.580 2.135 14.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.288 5.288 3 C -0.123 4.123 4 C -0.062 4.062 5 C -0.149 4.149 6 C 0.000 4.000 7 N -0.331 5.331 8 C 0.119 3.881 9 C -0.587 4.587 10 H 0.063 0.937 11 C -0.175 4.175 12 N -0.554 5.554 13 Si 0.776 3.224 14 H -0.200 1.200 15 H -0.203 1.203 16 H -0.198 1.198 17 C 0.310 3.690 18 O -0.434 6.434 19 C -0.136 4.136 20 H 0.104 0.896 21 C -0.141 4.141 22 C -0.148 4.148 23 C -0.169 4.169 24 C 0.185 3.815 25 O -0.267 6.267 26 C -0.079 4.079 27 C -0.062 4.062 28 O -0.307 6.307 29 H 0.044 0.956 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.110 0.890 47 H 0.099 0.901 48 H 0.097 0.903 49 H 0.114 0.886 50 H 0.110 0.890 51 H 0.135 0.865 52 H 0.150 0.850 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.792 5.687 1.753 14.109 hybrid contribution 0.985 -0.206 1.482 1.791 sum -11.808 5.482 3.235 13.414 Atomic orbital electron populations 1.22420 0.86988 1.02089 1.00924 1.61953 1.08684 1.14950 1.43183 1.22427 1.01101 0.87646 1.01099 1.21952 1.00478 0.92359 0.91401 1.21724 1.00419 0.94647 0.98145 1.21242 0.99965 0.80566 0.98235 1.48144 1.19875 1.09813 1.55278 1.19393 0.88265 0.88972 0.91443 1.21634 1.16078 1.26378 0.94561 0.93705 1.25566 0.98705 0.96560 0.96682 1.69987 1.35703 1.34895 1.14864 0.85728 0.78982 0.78485 0.79221 1.20017 1.20325 1.19825 1.20303 0.80952 0.89682 0.78063 1.90622 1.50707 1.59159 1.42957 1.22092 0.97634 0.94381 0.99493 0.89568 1.22059 0.98760 1.01371 0.91864 1.22327 0.92651 1.01143 0.98689 1.22930 0.98012 1.02103 0.93842 1.23482 0.92809 0.75745 0.89428 1.89746 1.72549 1.30406 1.33961 1.24706 0.97142 0.91445 0.94625 1.24472 1.00442 0.98990 0.82282 1.88804 1.91308 1.26983 1.23598 0.95576 0.89910 0.92372 0.90951 0.90120 0.95311 0.94670 0.90069 0.92303 0.92946 0.91766 0.90909 0.96614 0.92982 0.92307 0.91933 0.91075 0.89041 0.90094 0.90319 0.88621 0.89047 0.86529 0.85048 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 9.32 127.69 1.19 1.75 16 2 N -0.56 -14.46 5.02 -948.88 -4.76 -19.22 16 3 C 0.03 0.49 9.57 127.69 1.22 1.71 16 4 C 0.07 1.86 4.96 86.30 0.43 2.29 16 5 C -0.11 -3.73 5.46 30.59 0.17 -3.57 16 6 C 0.12 4.80 5.41 86.38 0.47 5.27 16 7 N -0.60 -26.61 2.43 -826.15 -2.00 -28.61 16 8 C 0.24 11.82 4.67 85.63 0.40 12.22 16 9 C -0.55 -29.50 9.31 25.60 0.24 -29.26 16 10 H 0.04 2.48 7.81 -2.91 -0.02 2.46 16 11 C 0.03 1.37 5.46 84.66 0.46 1.83 16 12 N -0.92 -50.92 13.29 21.45 0.28 -50.63 16 13 Si 0.95 42.80 29.54 68.60 2.03 44.83 16 14 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 15 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 17 C 0.52 23.12 6.77 87.66 0.59 23.71 16 18 O -0.55 -25.85 13.31 20.88 0.28 -25.57 16 19 C -0.11 -4.65 2.32 -10.98 -0.03 -4.68 16 20 H 0.09 4.00 7.98 -2.39 -0.02 3.98 16 21 C -0.10 -3.72 4.49 31.38 0.14 -3.58 16 22 C -0.11 -3.11 6.83 31.73 0.22 -2.89 16 23 C -0.13 -3.80 6.31 31.71 0.20 -3.60 16 24 C 0.26 9.22 1.04 31.25 0.03 9.25 16 25 O -0.35 -12.68 7.78 -117.73 -0.92 -13.60 16 26 C 0.00 -0.08 7.96 72.66 0.58 0.50 16 27 C 0.01 0.34 8.08 72.66 0.59 0.93 16 28 O -0.39 -12.62 10.91 -126.23 -1.38 -14.00 16 29 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 1.59 8.12 -2.39 -0.02 1.58 16 31 H 0.06 1.52 6.47 -2.39 -0.02 1.51 16 32 H 0.07 1.35 8.12 -2.39 -0.02 1.33 16 33 H 0.08 1.34 8.12 -2.39 -0.02 1.32 16 34 H 0.03 0.53 8.14 -2.38 -0.02 0.51 16 35 H 0.04 0.97 8.12 -2.39 -0.02 0.95 16 36 H 0.08 2.16 8.06 -2.38 -0.02 2.14 16 37 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.05 1.88 6.55 -2.39 -0.02 1.86 16 39 H 0.06 2.53 7.42 -2.39 -0.02 2.52 16 40 H 0.07 2.83 8.07 -2.39 -0.02 2.81 16 41 H 0.02 0.83 8.07 -2.39 -0.02 0.81 16 42 H 0.05 2.59 4.03 -2.39 -0.01 2.58 16 43 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 44 H 0.06 2.35 6.92 -2.39 -0.02 2.33 16 45 H 0.07 2.75 7.56 -2.38 -0.02 2.74 16 46 H 0.09 2.15 8.14 -2.39 -0.02 2.14 16 47 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 49 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 50 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 51 H 0.12 2.46 8.14 -2.38 -0.02 2.44 16 52 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 53 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -66.04 410.86 1.29 -64.75 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: 0.87 Total: 30.17 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 6.90 Total: 11.89 kcal Atomic # 7 Polarization: -91.99 SS G_CDS: -6.48 Total: -98.47 kcal Atomic # 8 Polarization: -51.15 SS G_CDS: -2.02 Total: -53.17 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -66.04 1.29 -64.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807025332.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.575 kcal (2) G-P(sol) polarization free energy of solvation -66.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds