Wall clock time and date at job start Sat Apr 11 2020 06:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46907 * 110.99676 * 2 1 4 4 C 1.46899 * 111.00476 * 123.94806 * 2 1 3 5 5 C 1.52998 * 109.46897 * 66.04660 * 4 2 1 6 6 C 1.52999 * 109.47411 * 179.97438 * 5 4 2 7 7 N 1.46495 * 109.47635 * 180.02562 * 6 5 4 8 8 C 1.46494 * 120.00091 * 90.00003 * 7 6 5 9 9 C 1.50703 * 109.47106 * 85.55265 * 8 7 6 10 10 H 1.07998 * 120.00129 * 333.35533 * 9 8 7 11 11 C 1.37877 * 119.99908 * 153.35157 * 9 8 7 12 12 N 1.31519 * 119.99958 * 185.78319 * 11 9 8 13 13 Si 1.86803 * 120.00276 * 5.50787 * 11 9 8 14 14 H 1.48496 * 109.47270 * 265.72945 * 13 11 9 15 15 H 1.48498 * 109.46656 * 25.72961 * 13 11 9 16 16 H 1.48497 * 109.47167 * 145.72778 * 13 11 9 17 17 C 1.34780 * 119.99890 * 270.00729 * 7 6 5 18 18 O 1.21273 * 120.00436 * 5.43052 * 17 7 6 19 19 C 1.50706 * 119.99554 * 185.43413 * 17 7 6 20 20 H 1.08989 * 110.04262 * 26.68669 * 19 17 7 21 21 C 1.54359 * 110.05560 * 148.19731 * 19 17 7 22 22 C 1.54930 * 104.20067 * 95.69018 * 21 19 17 23 23 C 1.54962 * 102.78534 * 37.75818 * 22 21 19 24 24 C 1.53529 * 110.05291 * 265.23524 * 19 17 7 25 25 O 1.43356 * 110.18062 * 121.38663 * 24 19 17 26 26 C 1.44885 * 104.69649 * 214.56678 * 25 24 19 27 27 C 1.54940 * 101.77806 * 35.71847 * 26 25 24 28 28 O 1.42983 * 110.38075 * 0.61806 * 24 19 17 29 29 H 1.09000 * 109.47398 * 296.04371 * 1 2 3 30 30 H 1.08993 * 109.47496 * 56.04880 * 1 2 3 31 31 H 1.09005 * 109.46572 * 176.05281 * 1 2 3 32 32 H 1.09003 * 109.47249 * 183.95842 * 3 2 1 33 33 H 1.09007 * 109.46646 * 303.95303 * 3 2 1 34 34 H 1.08993 * 109.47476 * 63.95338 * 3 2 1 35 35 H 1.09009 * 109.47235 * 306.05168 * 4 2 1 36 36 H 1.08997 * 109.47345 * 186.04827 * 4 2 1 37 37 H 1.09002 * 109.46810 * 60.00638 * 5 4 2 38 38 H 1.08997 * 109.47259 * 300.00219 * 5 4 2 39 39 H 1.09009 * 109.46849 * 60.00430 * 6 5 4 40 40 H 1.09000 * 109.47638 * 300.00672 * 6 5 4 41 41 H 1.09003 * 109.47183 * 325.55471 * 8 7 6 42 42 H 1.09000 * 109.47607 * 205.55740 * 8 7 6 43 43 H 0.97001 * 119.99867 * 179.72111 * 12 11 9 44 44 H 1.09000 * 110.48562 * 214.36942 * 21 19 17 45 45 H 1.08998 * 110.48745 * 337.01433 * 21 19 17 46 46 H 1.08991 * 110.75048 * 279.43180 * 22 21 19 47 47 H 1.09004 * 110.90248 * 156.15121 * 22 21 19 48 48 H 1.08999 * 110.50050 * 203.67509 * 23 22 21 49 49 H 1.08997 * 110.61853 * 81.04855 * 23 22 21 50 50 H 1.09001 * 110.96385 * 277.59792 * 26 25 24 51 51 H 1.09002 * 110.99737 * 153.85901 * 26 25 24 52 52 H 1.09007 * 110.69020 * 206.26987 * 27 26 25 53 53 H 1.09000 * 110.83837 * 83.14323 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7658 1.1376 5 6 1.6316 -2.2425 0.9705 6 6 2.1805 -3.0403 2.1550 7 7 1.8326 -4.4543 1.9947 8 6 2.7409 -5.3559 1.2819 9 6 3.7801 -5.8814 2.2385 10 1 4.0558 -5.3027 3.1077 11 6 4.3789 -7.1011 2.0040 12 7 5.2003 -7.6124 2.8948 13 14 4.0174 -8.0309 0.4247 14 1 2.9163 -8.9988 0.6610 15 1 3.6138 -7.0706 -0.6336 16 1 5.2349 -8.7623 -0.0088 17 6 0.6767 -4.9257 2.5029 18 8 -0.1205 -4.1626 3.0058 19 6 0.3749 -6.4011 2.4463 20 1 1.3033 -6.9716 2.4227 21 6 -0.4716 -6.8156 3.6687 22 6 -1.9316 -6.7732 3.1519 23 6 -1.7990 -7.3115 1.7049 24 6 -0.4697 -6.7184 1.2041 25 8 0.2087 -7.6709 0.3749 26 6 -0.1403 -7.2935 -0.9797 27 6 -0.1902 -5.7485 -0.8747 28 8 -0.7150 -5.5278 0.4513 29 1 -0.3634 0.4512 0.9233 30 1 -0.3634 0.5739 -0.8524 31 1 -0.3633 -1.0253 -0.0707 32 1 3.0827 1.3434 -0.0709 33 1 1.5896 1.9164 -0.8525 34 1 1.7043 1.8724 0.9232 35 1 1.5611 -0.3871 2.0629 36 1 3.0797 -0.6609 1.1756 37 1 2.0660 -2.6212 0.0453 38 1 0.5473 -2.3474 0.9325 39 1 1.7464 -2.6617 3.0805 40 1 3.2648 -2.9353 2.1926 41 1 3.2320 -4.8130 0.4743 42 1 2.1742 -6.1895 0.8672 43 1 5.6184 -8.4723 2.7317 44 1 -0.2098 -7.8237 3.9899 45 1 -0.3353 -6.1066 4.4852 46 1 -2.3112 -5.7516 3.1506 47 1 -2.5740 -7.4216 3.7478 48 1 -2.6285 -6.9623 1.0901 49 1 -1.7558 -8.4007 1.7030 50 1 -1.1137 -7.6971 -1.2585 51 1 0.6280 -7.6120 -1.6842 52 1 -0.8594 -5.3326 -1.6279 53 1 0.8079 -5.3209 -0.9700 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807025333.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:50 Heat of formation + Delta-G solvation = -138.905992 kcal Electronic energy + Delta-G solvation = -33381.271524 eV Core-core repulsion = 29252.285849 eV Total energy + Delta-G solvation = -4128.985674 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.24994 -40.43211 -38.70348 -37.42704 -36.63106 -36.06954 -34.75126 -33.19486 -30.88488 -30.32816 -29.82774 -28.50681 -27.76044 -26.88291 -24.59947 -24.18681 -24.04558 -22.21447 -21.78567 -21.70297 -19.70318 -19.07798 -18.43289 -18.07647 -17.74061 -17.07027 -16.79762 -16.52927 -16.35830 -16.05417 -15.94238 -15.67403 -15.26583 -15.18782 -14.89524 -14.82593 -14.66253 -14.21215 -13.98548 -13.79700 -13.59245 -13.54529 -13.31653 -13.20021 -13.07023 -12.97848 -12.84463 -12.62222 -12.52635 -12.45527 -12.29534 -12.25254 -12.08472 -12.07211 -11.91289 -11.78129 -11.69019 -11.52387 -11.12917 -10.82146 -10.67310 -10.51478 -9.38779 -9.34668 -8.34679 -6.41042 1.33997 1.41497 1.45779 1.73099 2.16333 2.31720 2.52804 2.87981 3.01553 3.05220 3.39867 3.49197 3.67577 3.75281 3.95601 4.02301 4.07717 4.11825 4.19955 4.22897 4.33174 4.39333 4.41454 4.45568 4.48736 4.53704 4.56331 4.59531 4.60230 4.64753 4.65520 4.73590 4.77620 4.78941 4.86293 4.89305 4.89581 4.95447 4.98325 5.00128 5.08214 5.10237 5.13641 5.26142 5.37892 5.43748 5.78839 6.01865 6.09792 6.11912 6.13874 6.60213 6.69346 7.24373 7.37905 8.81396 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009062 B = 0.005158 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3089.088731 B = 5427.101526 C = 6714.246529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.560 5.560 3 C 0.024 3.976 4 C 0.065 3.935 5 C -0.107 4.107 6 C 0.122 3.878 7 N -0.595 5.595 8 C 0.222 3.778 9 C -0.543 4.543 10 H 0.033 0.967 11 C 0.028 3.972 12 N -0.935 5.935 13 Si 0.928 3.072 14 H -0.257 1.257 15 H -0.243 1.243 16 H -0.284 1.284 17 C 0.545 3.455 18 O -0.580 6.580 19 C -0.135 4.135 20 H 0.091 0.909 21 C -0.105 4.105 22 C -0.107 4.107 23 C -0.132 4.132 24 C 0.269 3.731 25 O -0.387 6.387 26 C 0.010 3.990 27 C 0.010 3.990 28 O -0.380 6.380 29 H 0.023 0.977 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.027 0.973 35 H 0.032 0.968 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.035 0.965 42 H 0.049 0.951 43 H 0.269 0.731 44 H 0.085 0.915 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.101 0.899 48 H 0.094 0.906 49 H 0.100 0.900 50 H 0.107 0.893 51 H 0.120 0.880 52 H 0.131 0.869 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.637 6.005 -10.063 17.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.284 5.284 3 C -0.123 4.123 4 C -0.064 4.064 5 C -0.146 4.146 6 C -0.002 4.002 7 N -0.324 5.324 8 C 0.100 3.900 9 C -0.582 4.582 10 H 0.051 0.949 11 C -0.172 4.172 12 N -0.574 5.574 13 Si 0.751 3.249 14 H -0.182 1.182 15 H -0.166 1.166 16 H -0.210 1.210 17 C 0.334 3.666 18 O -0.461 6.461 19 C -0.156 4.156 20 H 0.109 0.891 21 C -0.143 4.143 22 C -0.144 4.144 23 C -0.170 4.170 24 C 0.191 3.809 25 O -0.308 6.308 26 C -0.066 4.066 27 C -0.065 4.065 28 O -0.302 6.302 29 H 0.042 0.958 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.053 0.947 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.103 0.897 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.119 0.881 48 H 0.113 0.887 49 H 0.119 0.881 50 H 0.125 0.875 51 H 0.138 0.862 52 H 0.149 0.851 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.711 6.060 -10.061 18.054 hybrid contribution 0.624 -0.162 0.534 0.837 sum -13.087 5.898 -9.527 17.229 Atomic orbital electron populations 1.22412 0.87052 1.02067 1.00829 1.61977 1.08578 1.14866 1.42956 1.22437 1.01151 0.87688 1.01059 1.21971 1.00511 0.92500 0.91389 1.21688 1.00578 0.94387 0.97921 1.21286 0.99992 0.80438 0.98461 1.48038 1.19709 1.09655 1.55023 1.19558 0.88477 0.90023 0.91922 1.21479 1.22097 1.04594 1.09998 0.94900 1.25736 0.94329 0.97581 0.99505 1.70049 1.31794 1.19219 1.36346 0.85988 0.78339 0.80013 0.80601 1.18156 1.16581 1.21000 1.20027 0.80540 0.89789 0.76240 1.90521 1.48042 1.59488 1.48058 1.22388 1.01298 0.94285 0.97662 0.89112 1.22247 0.95465 1.01615 0.94979 1.22382 0.95203 1.01716 0.95105 1.22919 0.94784 1.01710 0.97547 1.23646 0.91393 0.78299 0.87552 1.89303 1.72015 1.51723 1.17788 1.24705 1.04279 0.93473 0.84136 1.24452 1.00808 0.96453 0.84834 1.88955 1.80499 1.36617 1.24085 0.95834 0.89847 0.92374 0.90859 0.90052 0.95485 0.95001 0.89951 0.91829 0.92891 0.92117 0.90798 0.94707 0.93342 0.92208 0.89668 0.92072 0.91934 0.88105 0.88738 0.88145 0.87535 0.86176 0.85150 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 9.32 127.69 1.19 1.75 16 2 N -0.56 -13.66 5.02 -948.84 -4.76 -18.42 16 3 C 0.02 0.46 9.57 127.69 1.22 1.68 16 4 C 0.06 1.76 4.96 86.30 0.43 2.18 16 5 C -0.11 -3.48 5.46 30.59 0.17 -3.31 16 6 C 0.12 4.70 5.39 86.38 0.47 5.16 16 7 N -0.59 -26.01 2.46 -826.16 -2.03 -28.04 16 8 C 0.22 10.26 4.21 85.64 0.36 10.62 16 9 C -0.54 -30.20 9.52 25.60 0.24 -29.95 16 10 H 0.03 2.07 8.06 -2.91 -0.02 2.04 16 11 C 0.03 1.59 5.47 84.65 0.46 2.05 16 12 N -0.94 -56.52 13.96 21.45 0.30 -56.22 16 13 Si 0.93 41.93 27.09 68.60 1.86 43.79 16 14 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 15 H -0.24 -9.89 6.93 99.48 0.69 -9.20 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 17 C 0.55 24.04 5.31 87.66 0.47 24.50 16 18 O -0.58 -27.02 15.69 -3.01 -0.05 -27.07 16 19 C -0.13 -5.44 2.22 -10.90 -0.02 -5.46 16 20 H 0.09 4.25 6.13 -2.39 -0.01 4.24 16 21 C -0.11 -3.64 6.05 31.72 0.19 -3.45 16 22 C -0.11 -2.97 6.85 31.93 0.22 -2.75 16 23 C -0.13 -3.50 6.28 31.58 0.20 -3.30 16 24 C 0.27 9.05 1.10 31.09 0.03 9.09 16 25 O -0.39 -12.97 10.15 -126.22 -1.28 -14.25 16 26 C 0.01 0.23 7.94 72.65 0.58 0.80 16 27 C 0.01 0.27 8.08 72.65 0.59 0.86 16 28 O -0.38 -12.80 9.34 -125.41 -1.17 -13.97 16 29 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.08 1.53 8.12 -2.39 -0.02 1.51 16 31 H 0.06 1.49 6.47 -2.38 -0.02 1.47 16 32 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16 33 H 0.08 1.26 8.12 -2.38 -0.02 1.24 16 34 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.03 0.87 8.12 -2.38 -0.02 0.85 16 36 H 0.08 2.10 8.06 -2.39 -0.02 2.08 16 37 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.05 1.89 6.55 -2.39 -0.02 1.87 16 39 H 0.06 2.42 7.51 -2.38 -0.02 2.40 16 40 H 0.07 2.84 8.07 -2.39 -0.02 2.82 16 41 H 0.03 1.55 8.11 -2.39 -0.02 1.53 16 42 H 0.05 2.20 3.57 -2.39 -0.01 2.19 16 43 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 44 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 45 H 0.06 2.29 7.50 -2.39 -0.02 2.27 16 46 H 0.06 1.95 8.10 -2.39 -0.02 1.93 16 47 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 48 H 0.09 2.18 8.06 -2.39 -0.02 2.16 16 49 H 0.10 2.36 8.07 -2.39 -0.02 2.34 16 50 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 52 H 0.13 2.42 8.14 -2.38 -0.02 2.40 16 53 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -71.23 410.91 0.51 -70.73 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: 0.85 Total: 33.00 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 6.79 Total: 10.46 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -6.49 Total: -102.69 kcal Atomic # 8 Polarization: -52.79 SS G_CDS: -2.50 Total: -55.29 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.86 Total: 43.79 kcal Total: -71.23 0.51 -70.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807025333.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.177 kcal (2) G-P(sol) polarization free energy of solvation -71.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds