Wall clock time and date at job start Sat Apr 11 2020 06:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00170 * 2 1 4 4 C 1.53000 * 109.46717 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47228 * 65.00193 * 4 3 2 6 6 C 1.46495 * 120.00040 * 89.99162 * 5 4 3 7 7 C 1.50707 * 109.46777 * 84.12452 * 6 5 4 8 8 H 1.07993 * 120.00063 * 359.97438 * 7 6 5 9 9 C 1.37883 * 119.99540 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99199 * 180.02562 * 9 7 6 11 11 Si 1.86793 * 120.00420 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.47124 * 90.00175 * 11 9 7 13 13 H 1.48502 * 109.47072 * 210.00047 * 11 9 7 14 14 H 1.48496 * 109.47084 * 330.00154 * 11 9 7 15 15 C 1.34774 * 119.99880 * 269.72670 * 5 4 3 16 16 O 1.21282 * 120.00011 * 4.58834 * 15 5 4 17 17 C 1.50696 * 119.99989 * 184.59766 * 15 5 4 18 18 C 1.53000 * 109.47307 * 286.29383 * 17 15 5 19 19 C 1.53000 * 109.47329 * 180.02562 * 18 17 15 20 20 C 1.52998 * 109.47107 * 59.99678 * 19 18 17 21 21 C 1.50696 * 109.47143 * 179.97438 * 20 19 18 22 22 O 1.21286 * 119.99624 * 119.99751 * 21 20 19 23 23 N 1.34774 * 120.00508 * 300.00278 * 21 20 19 24 24 C 1.46499 * 120.00394 * 179.97438 * 23 21 20 25 25 C 1.46504 * 119.99771 * 359.97438 * 23 21 20 26 26 C 1.53000 * 109.47289 * 300.00346 * 20 19 18 27 27 C 1.52998 * 109.47089 * 166.29085 * 17 15 5 28 28 H 1.09001 * 109.46963 * 300.00818 * 1 2 3 29 29 H 1.09000 * 109.47015 * 59.99827 * 1 2 3 30 30 H 1.09000 * 109.47604 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46908 * 59.99718 * 3 2 1 32 32 H 1.08992 * 109.46795 * 299.99596 * 3 2 1 33 33 H 1.08994 * 109.47428 * 304.99800 * 4 3 2 34 34 H 1.09001 * 109.46927 * 184.99567 * 4 3 2 35 35 H 1.08994 * 109.47211 * 204.12253 * 6 5 4 36 36 H 1.09006 * 109.47521 * 324.12593 * 6 5 4 37 37 H 0.97002 * 119.99805 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.47417 * 46.28853 * 17 15 5 39 39 H 1.09002 * 109.46450 * 300.00063 * 18 17 15 40 40 H 1.08994 * 109.46915 * 59.99220 * 18 17 15 41 41 H 1.08996 * 109.46945 * 299.99996 * 19 18 17 42 42 H 1.08995 * 109.46657 * 179.97438 * 19 18 17 43 43 H 1.09011 * 109.47079 * 59.99887 * 20 19 18 44 44 H 1.09001 * 109.46951 * 89.99760 * 24 23 21 45 45 H 1.08993 * 109.47135 * 209.99922 * 24 23 21 46 46 H 1.09001 * 109.47138 * 330.00534 * 24 23 21 47 47 H 1.08992 * 109.47243 * 89.99673 * 25 23 21 48 48 H 1.08999 * 109.47149 * 210.00308 * 25 23 21 49 49 H 1.09007 * 109.46787 * 329.99643 * 25 23 21 50 50 H 1.09002 * 109.46450 * 299.99762 * 26 20 19 51 51 H 1.09004 * 109.47063 * 180.02562 * 26 20 19 52 52 H 1.08995 * 109.47447 * 299.99582 * 27 17 15 53 53 H 1.08999 * 109.47417 * 60.00094 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.2883 1.3996 -2.4130 7 6 5.7064 1.8986 -2.3071 8 1 6.3145 1.6213 -1.4588 9 6 6.2273 2.7092 -3.2933 10 7 7.4650 3.1443 -3.2011 11 14 5.1758 3.1883 -4.7609 12 1 4.4469 4.4462 -4.4581 13 1 6.0454 3.3934 -5.9471 14 1 4.1990 2.1063 -5.0443 15 6 4.1011 -0.7758 -1.3315 16 8 3.7689 -1.4730 -0.3964 17 6 4.6532 -1.4073 -2.5834 18 6 3.6025 -1.3420 -3.6937 19 6 4.1628 -1.9838 -4.9646 20 6 4.5182 -3.4452 -4.6839 21 6 5.0695 -4.0774 -5.9358 22 8 6.1927 -4.5351 -5.9400 23 7 4.3145 -4.1343 -7.0508 24 6 4.8507 -4.7484 -8.2680 25 6 2.9576 -3.5819 -7.0456 26 6 5.5689 -3.5105 -3.5737 27 6 5.0090 -2.8687 -2.3032 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8508 0.5684 0.8427 34 1 3.9786 2.1763 0.0901 35 1 4.1772 0.8113 -3.3239 36 1 3.6056 2.2488 -2.4434 37 1 7.8315 3.7149 -3.8947 38 1 5.5476 -0.8694 -2.8977 39 1 2.7081 -1.8800 -3.3794 40 1 3.3490 -0.3009 -3.8932 41 1 5.0574 -1.4463 -5.2789 42 1 3.4140 -1.9376 -5.7553 43 1 3.6235 -3.9828 -4.3694 44 1 4.6137 -5.8124 -8.2729 45 1 4.4049 -4.2729 -9.1416 46 1 5.9324 -4.6171 -8.2951 47 1 2.9910 -2.5334 -7.3412 48 1 2.3363 -4.1378 -7.7478 49 1 2.5359 -3.6637 -6.0438 50 1 6.4635 -2.9729 -3.8882 51 1 5.8224 -4.5517 -3.3741 52 1 5.7577 -2.9152 -1.5124 53 1 4.1147 -3.4067 -1.9890 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826016491.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:35 Heat of formation + Delta-G solvation = -138.129375 kcal Electronic energy + Delta-G solvation = -32236.022494 eV Core-core repulsion = 28107.070497 eV Total energy + Delta-G solvation = -4128.951998 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.67721 -40.78976 -38.80255 -37.96182 -36.70703 -36.61495 -34.53255 -32.89138 -31.90384 -31.03644 -29.36975 -28.76469 -27.44751 -27.02169 -25.04104 -24.53104 -23.59765 -23.18351 -21.20253 -20.16544 -19.76573 -19.03017 -17.98512 -17.89681 -17.56746 -17.18687 -16.92324 -16.75394 -16.52244 -16.19312 -15.93407 -15.44325 -15.35876 -14.99771 -14.94117 -14.63219 -14.27702 -14.15700 -13.85947 -13.75639 -13.50262 -13.41797 -13.33754 -13.21535 -13.09865 -12.95988 -12.86474 -12.66285 -12.57833 -12.42729 -12.38175 -12.17466 -12.05592 -11.91479 -11.79049 -11.63824 -11.39676 -11.04954 -10.78718 -10.75321 -10.52403 -10.26936 -9.65133 -9.31186 -8.27200 -6.33933 1.40277 1.41831 1.51736 1.58929 1.92175 2.08585 2.36250 2.37550 3.01022 3.07235 3.43482 3.64230 3.72536 3.84207 4.14606 4.17362 4.19741 4.23664 4.28306 4.37177 4.42935 4.44770 4.46324 4.50955 4.53985 4.55991 4.58512 4.59861 4.65734 4.70784 4.78858 4.84751 4.85944 4.88239 4.89889 4.93339 4.96422 5.02490 5.10465 5.12735 5.20873 5.23488 5.33836 5.46991 5.52832 5.55316 5.81081 6.22280 6.33981 6.39939 6.69189 6.79226 7.15401 7.29317 7.51721 8.89481 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008598 B = 0.004358 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3255.660351 B = 6423.770513 C = 8131.626239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.053 3.947 4 C 0.115 3.885 5 N -0.595 5.595 6 C 0.209 3.791 7 C -0.539 4.539 8 H 0.025 0.975 9 C 0.016 3.984 10 N -0.946 5.946 11 Si 0.936 3.064 12 H -0.263 1.263 13 H -0.289 1.289 14 H -0.226 1.226 15 C 0.520 3.480 16 O -0.573 6.573 17 C -0.106 4.106 18 C -0.102 4.102 19 C -0.113 4.113 20 C -0.096 4.096 21 C 0.512 3.488 22 O -0.587 6.587 23 N -0.621 5.621 24 C 0.081 3.919 25 C 0.063 3.937 26 C -0.091 4.091 27 C -0.085 4.085 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.040 0.960 37 H 0.266 0.734 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.051 0.949 42 H 0.112 0.888 43 H 0.125 0.875 44 H 0.061 0.939 45 H 0.098 0.902 46 H 0.051 0.949 47 H 0.072 0.928 48 H 0.096 0.904 49 H 0.088 0.912 50 H 0.046 0.954 51 H 0.069 0.931 52 H 0.047 0.953 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.037 -9.755 -8.206 22.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.319 6.319 3 C -0.024 4.024 4 C -0.008 4.008 5 N -0.325 5.325 6 C 0.087 3.913 7 C -0.578 4.578 8 H 0.044 0.956 9 C -0.182 4.182 10 N -0.586 5.586 11 Si 0.758 3.242 12 H -0.188 1.188 13 H -0.215 1.215 14 H -0.148 1.148 15 C 0.309 3.691 16 O -0.453 6.453 17 C -0.128 4.128 18 C -0.140 4.140 19 C -0.150 4.150 20 C -0.117 4.117 21 C 0.301 3.699 22 O -0.467 6.467 23 N -0.354 5.354 24 C -0.062 4.062 25 C -0.078 4.078 26 C -0.129 4.129 27 C -0.123 4.123 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.112 0.888 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.130 0.870 43 H 0.142 0.858 44 H 0.080 0.920 45 H 0.117 0.883 46 H 0.070 0.930 47 H 0.091 0.909 48 H 0.115 0.885 49 H 0.106 0.894 50 H 0.065 0.935 51 H 0.088 0.912 52 H 0.066 0.934 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.414 -10.407 -7.828 21.745 hybrid contribution 0.702 0.988 -0.189 1.227 sum -16.713 -9.419 -8.017 20.792 Atomic orbital electron populations 1.22854 0.80402 1.03107 1.00545 1.88102 1.20593 1.27780 1.95439 1.22938 0.93091 0.85138 1.01243 1.21443 0.93388 0.98984 0.87011 1.47851 1.65152 1.06028 1.13517 1.19892 0.94095 0.91439 0.85849 1.21576 0.98090 1.30603 1.07507 0.95650 1.25832 0.95988 0.95129 1.01248 1.70076 1.16766 1.35747 1.36013 0.85885 0.79485 0.80690 0.78136 1.18800 1.21535 1.14800 1.20776 0.76916 0.81982 0.89389 1.90585 1.51471 1.62204 1.41076 1.21320 1.00385 0.97190 0.93881 1.21597 0.97237 1.02117 0.93004 1.21788 1.02280 0.92493 0.98478 1.21303 1.00693 0.97780 0.91901 1.21077 0.84844 0.78230 0.85762 1.90665 1.21322 1.49755 1.84983 1.47901 1.16785 1.59299 1.11391 1.21742 0.99706 0.98347 0.86366 1.22313 0.80784 0.99735 1.04980 1.21244 0.97293 1.00920 0.93479 1.21206 1.01196 0.93150 0.96710 0.93159 0.93473 0.89472 0.90674 0.92590 0.91848 0.88822 0.91781 0.94155 0.92469 0.90382 0.89710 0.90489 0.93032 0.86998 0.85771 0.91999 0.88336 0.93011 0.90939 0.88537 0.89377 0.93467 0.91199 0.93367 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.40 -12.77 9.33 -137.43 -1.28 -14.05 16 3 C 0.05 1.55 6.28 71.98 0.45 2.00 16 4 C 0.11 4.16 5.87 86.38 0.51 4.66 16 5 N -0.60 -24.01 2.44 -826.16 -2.02 -26.03 16 6 C 0.21 8.73 3.79 85.64 0.32 9.05 16 7 C -0.54 -28.60 9.73 25.60 0.25 -28.35 16 8 H 0.03 1.57 8.06 -2.91 -0.02 1.55 16 9 C 0.02 0.88 5.47 84.66 0.46 1.35 16 10 N -0.95 -56.65 13.96 21.45 0.30 -56.35 16 11 Si 0.94 38.80 27.47 68.60 1.88 40.68 16 12 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 13 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 14 H -0.23 -7.92 6.54 99.48 0.65 -7.27 16 15 C 0.52 21.22 6.61 87.66 0.58 21.80 16 16 O -0.57 -25.69 14.61 8.52 0.12 -25.57 16 17 C -0.11 -3.77 1.70 -11.54 -0.02 -3.79 16 18 C -0.10 -2.76 4.87 30.59 0.15 -2.61 16 19 C -0.11 -2.61 4.84 30.59 0.15 -2.46 16 20 C -0.10 -2.27 1.72 -11.54 -0.02 -2.29 16 21 C 0.51 13.55 7.08 87.66 0.62 14.17 16 22 O -0.59 -20.89 15.56 -3.05 -0.05 -20.94 16 23 N -0.62 -11.64 3.27 -871.89 -2.85 -14.50 16 24 C 0.08 1.30 10.44 127.77 1.33 2.63 16 25 C 0.06 0.64 8.80 127.77 1.12 1.77 16 26 C -0.09 -2.72 4.49 30.58 0.14 -2.58 16 27 C -0.08 -2.74 4.59 30.58 0.14 -2.60 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 2.47 7.48 -2.39 -0.02 2.46 16 34 H 0.09 3.31 8.07 -2.39 -0.02 3.29 16 35 H 0.06 2.51 3.05 -2.39 -0.01 2.50 16 36 H 0.04 1.57 7.54 -2.38 -0.02 1.55 16 37 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 38 H 0.08 3.24 7.48 -2.39 -0.02 3.22 16 39 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.08 2.17 5.45 -2.39 -0.01 2.16 16 41 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.11 1.78 4.53 -2.39 -0.01 1.77 16 43 H 0.12 2.26 7.40 -2.38 -0.02 2.24 16 44 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.10 0.97 8.07 -2.39 -0.02 0.95 16 46 H 0.05 1.10 7.42 -2.39 -0.02 1.09 16 47 H 0.07 0.65 6.95 -2.39 -0.02 0.63 16 48 H 0.10 0.51 8.07 -2.39 -0.02 0.50 16 49 H 0.09 0.76 6.01 -2.38 -0.01 0.75 16 50 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 51 H 0.07 2.04 8.10 -2.38 -0.02 2.02 16 52 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 53 H 0.08 2.36 7.95 -2.39 -0.02 2.34 16 Total: -1.00 -77.58 406.00 4.37 -73.20 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.83 Total: 28.96 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 7.44 Total: 14.59 kcal Atomic # 7 Polarization: -92.30 SS G_CDS: -4.57 Total: -96.88 kcal Atomic # 8 Polarization: -59.35 SS G_CDS: -1.21 Total: -60.56 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 1.88 Total: 40.68 kcal Total: -77.58 4.37 -73.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826016491.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.927 kcal (2) G-P(sol) polarization free energy of solvation -77.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds