Wall clock time and date at job start Sat Apr 11 2020 06:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42909 * 113.99888 * 2 1 4 4 C 1.52994 * 109.47068 * 184.70092 * 3 2 1 5 5 N 1.46908 * 109.47036 * 69.22527 * 4 3 2 6 6 C 1.46905 * 110.99528 * 286.16334 * 5 4 3 7 7 C 1.50698 * 109.47142 * 302.52161 * 6 5 4 8 8 H 1.07994 * 120.00364 * 4.58701 * 7 6 5 9 9 C 1.37882 * 119.99880 * 184.59678 * 7 6 5 10 10 N 1.31519 * 119.99434 * 354.83124 * 9 7 6 11 11 Si 1.86793 * 119.99974 * 174.83920 * 9 7 6 12 12 H 1.48497 * 109.47103 * 94.99244 * 11 9 7 13 13 H 1.48500 * 109.46945 * 214.98867 * 11 9 7 14 14 H 1.48496 * 109.47458 * 334.98695 * 11 9 7 15 15 C 1.46896 * 110.99898 * 162.21217 * 5 4 3 16 16 C 1.53005 * 109.47040 * 189.99741 * 15 5 4 17 17 H 1.08997 * 110.57692 * 307.70827 * 16 15 5 18 18 C 1.54087 * 110.52125 * 184.99734 * 16 15 5 19 19 N 1.47092 * 103.77731 * 241.36794 * 18 16 15 20 20 C 1.46504 * 125.55957 * 179.97438 * 19 18 16 21 21 C 1.53001 * 109.46907 * 240.00265 * 20 19 18 22 22 C 1.52997 * 109.46897 * 180.02562 * 21 20 19 23 23 C 1.52996 * 109.47680 * 59.99742 * 22 21 20 24 24 C 1.53002 * 109.47050 * 300.00468 * 23 22 21 25 25 C 1.52994 * 109.47168 * 120.00215 * 20 19 18 26 26 C 1.34007 * 108.88168 * 0.24784 * 19 18 16 27 27 O 1.21504 * 123.06962 * 179.76198 * 26 19 18 28 28 O 1.33776 * 113.85351 * 359.56399 * 26 19 18 29 29 H 1.09005 * 109.46723 * 184.93185 * 1 2 3 30 30 H 1.09006 * 109.46765 * 304.92566 * 1 2 3 31 31 H 1.08995 * 109.47475 * 64.93277 * 1 2 3 32 32 H 1.08998 * 109.46689 * 64.70329 * 3 2 1 33 33 H 1.09001 * 109.46872 * 304.70667 * 3 2 1 34 34 H 1.09000 * 109.47582 * 309.22514 * 4 3 2 35 35 H 1.09000 * 109.47402 * 189.22296 * 4 3 2 36 36 H 1.08996 * 109.46970 * 62.52594 * 6 5 4 37 37 H 1.09004 * 109.46581 * 182.52125 * 6 5 4 38 38 H 0.97007 * 119.99339 * 179.97438 * 10 9 7 39 39 H 1.08997 * 109.47150 * 70.00064 * 15 5 4 40 40 H 1.09001 * 109.47150 * 309.99705 * 15 5 4 41 41 H 1.09002 * 110.56126 * 122.79827 * 18 16 15 42 42 H 1.08996 * 110.56871 * 359.94248 * 18 16 15 43 43 H 1.08997 * 109.46798 * 359.97438 * 20 19 18 44 44 H 1.09002 * 109.46964 * 299.99895 * 21 20 19 45 45 H 1.09003 * 109.47037 * 60.00186 * 21 20 19 46 46 H 1.09002 * 109.47067 * 299.99636 * 22 21 20 47 47 H 1.09001 * 109.47169 * 180.02562 * 22 21 20 48 48 H 1.08994 * 109.47641 * 180.02562 * 23 22 21 49 49 H 1.09002 * 109.46958 * 59.99826 * 23 22 21 50 50 H 1.09002 * 109.46716 * 299.99506 * 24 23 22 51 51 H 1.09003 * 109.47434 * 179.97438 * 24 23 22 52 52 H 1.09001 * 109.47487 * 300.00321 * 25 20 19 53 53 H 1.09002 * 109.47223 * 59.99787 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5310 1.1867 -0.1182 5 7 3.8814 0.7024 -1.4601 6 6 3.5732 -0.7271 -1.6009 7 6 4.3110 -1.5066 -0.5431 8 1 4.8862 -0.9864 0.2084 9 6 4.2519 -2.8842 -0.5350 10 7 3.4716 -3.5138 -1.3861 11 14 5.2800 -3.8558 0.6849 12 1 4.4618 -4.1670 1.8845 13 1 5.7332 -5.1210 0.0532 14 1 6.4622 -3.0522 1.0869 15 6 5.2938 0.9687 -1.7637 16 6 5.5602 0.6829 -3.2430 17 1 5.2120 -0.3150 -3.5092 18 6 7.0603 0.8343 -3.5608 19 7 7.1004 1.9192 -4.5533 20 6 8.3104 2.4530 -5.1837 21 6 8.4397 3.9426 -4.8592 22 6 9.7030 4.5001 -5.5180 23 6 9.6122 4.3144 -7.0340 24 6 9.4827 2.8248 -7.3584 25 6 8.2200 2.2672 -6.6996 26 6 5.8502 2.3438 -4.7824 27 8 5.5862 3.2401 -5.5591 28 8 4.9190 1.6879 -4.0808 29 1 -0.3633 -1.0239 0.0884 30 1 -0.3633 0.5884 0.8426 31 1 -0.3634 0.4354 -0.9308 32 1 1.7568 1.8160 0.9291 33 1 1.6234 1.8754 -0.8448 34 1 3.8998 0.4845 0.6293 35 1 3.9856 2.1638 0.0456 36 1 2.5005 -0.8807 -1.4836 37 1 3.8835 -1.0701 -2.5879 38 1 3.4304 -4.4830 -1.3806 39 1 5.9248 0.3258 -1.1501 40 1 5.5210 2.0129 -1.5487 41 1 7.4566 -0.0880 -3.9856 42 1 7.6151 1.1140 -2.6653 43 1 9.1827 1.9216 -4.8034 44 1 7.5673 4.4743 -5.2391 45 1 8.5041 4.0749 -3.7791 46 1 10.5756 3.9685 -5.1385 47 1 9.7955 5.5613 -5.2865 48 1 10.5123 4.7112 -7.5033 49 1 8.7396 4.8460 -7.4135 50 1 10.3553 2.2932 -6.9789 51 1 9.4176 2.6924 -8.4384 52 1 8.1278 1.2060 -6.9308 53 1 7.3476 2.7989 -7.0795 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827970638.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:40 Heat of formation + Delta-G solvation = -138.516658 kcal Electronic energy + Delta-G solvation = -31625.606548 eV Core-core repulsion = 27496.637757 eV Total energy + Delta-G solvation = -4128.968792 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.66061 -39.70118 -39.20773 -38.25430 -37.36630 -35.85355 -34.44474 -32.43248 -31.69626 -30.91646 -29.96448 -28.41304 -26.97378 -25.88013 -24.70207 -24.47966 -23.52988 -23.05418 -21.86010 -21.25017 -20.39987 -18.53207 -18.45743 -17.94916 -17.42917 -17.22690 -17.01418 -16.59332 -16.17640 -16.03095 -15.71696 -15.48915 -15.41041 -15.24049 -14.88363 -14.81281 -14.61387 -14.45419 -14.19551 -13.65861 -13.45329 -13.27639 -13.14146 -13.07320 -12.96188 -12.82980 -12.63189 -12.56910 -12.50870 -12.40948 -12.17797 -12.05455 -11.92109 -11.66632 -11.64423 -11.47056 -11.35291 -11.29258 -11.15741 -11.09656 -10.54021 -10.18444 -9.81680 -8.88729 -7.99294 -6.13714 1.42425 1.44940 1.53110 1.53799 1.70206 2.47576 2.54394 3.05532 3.16546 3.27349 3.52299 3.60847 3.76528 3.87120 3.98068 4.02057 4.21263 4.28923 4.31504 4.34648 4.42710 4.45946 4.51916 4.53758 4.57652 4.60893 4.61800 4.62979 4.67038 4.69971 4.81148 4.87335 4.90662 4.92230 4.98310 5.11302 5.15003 5.19702 5.26044 5.28207 5.31409 5.37889 5.39548 5.51796 5.63591 5.66107 6.02164 6.19442 6.36942 6.45847 6.51764 6.66831 7.03197 7.05504 7.54046 9.03703 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013570 B = 0.002963 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.816746 B = 9447.843551 C =10652.918639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.397 6.397 3 C 0.070 3.930 4 C 0.057 3.943 5 N -0.544 5.544 6 C 0.197 3.803 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.014 3.986 10 N -0.927 5.927 11 Si 0.946 3.054 12 H -0.287 1.287 13 H -0.287 1.287 14 H -0.260 1.260 15 C 0.060 3.940 16 C 0.078 3.922 17 H 0.100 0.900 18 C 0.080 3.920 19 N -0.620 5.620 20 C 0.176 3.824 21 C -0.134 4.134 22 C -0.108 4.108 23 C -0.123 4.123 24 C -0.108 4.108 25 C -0.136 4.136 26 C 0.634 3.366 27 O -0.568 6.568 28 O -0.336 6.336 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.041 0.959 35 H 0.094 0.906 36 H 0.030 0.970 37 H 0.000 1.000 38 H 0.258 0.742 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.113 0.887 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.046 0.954 45 H 0.067 0.933 46 H 0.084 0.916 47 H 0.070 0.930 48 H 0.081 0.919 49 H 0.044 0.956 50 H 0.084 0.916 51 H 0.068 0.932 52 H 0.063 0.937 53 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.571 12.572 -3.771 18.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.316 6.316 3 C -0.007 4.007 4 C -0.071 4.071 5 N -0.268 5.268 6 C 0.071 3.929 7 C -0.570 4.570 8 H 0.077 0.923 9 C -0.184 4.184 10 N -0.567 5.567 11 Si 0.773 3.227 12 H -0.214 1.214 13 H -0.213 1.213 14 H -0.184 1.184 15 C -0.069 4.069 16 C 0.023 3.977 17 H 0.118 0.882 18 C -0.043 4.043 19 N -0.366 5.366 20 C 0.076 3.924 21 C -0.172 4.172 22 C -0.145 4.145 23 C -0.161 4.161 24 C -0.145 4.145 25 C -0.174 4.174 26 C 0.388 3.612 27 O -0.457 6.457 28 O -0.246 6.246 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.112 0.888 36 H 0.048 0.952 37 H 0.018 0.982 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.131 0.869 42 H 0.138 0.862 43 H 0.143 0.857 44 H 0.064 0.936 45 H 0.086 0.914 46 H 0.103 0.897 47 H 0.089 0.911 48 H 0.100 0.900 49 H 0.063 0.937 50 H 0.103 0.897 51 H 0.087 0.913 52 H 0.082 0.918 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.961 12.974 -4.543 18.893 hybrid contribution -0.158 -1.299 1.050 1.678 sum 12.803 11.674 -3.493 17.675 Atomic orbital electron populations 1.22746 0.81436 1.02379 1.00137 1.88229 1.19861 1.28403 1.95095 1.22575 0.93809 0.84534 0.99775 1.22110 0.94531 0.99817 0.90670 1.62499 1.18202 1.19382 1.26699 1.19614 0.97045 0.82167 0.94104 1.21841 1.29814 0.91837 1.13495 0.92341 1.25653 0.96418 0.99053 0.97295 1.70110 1.39323 1.08423 1.38893 0.85733 0.79485 0.78448 0.79075 1.21362 1.21278 1.18396 1.22250 0.91254 1.01153 0.92206 1.24024 0.91331 0.91040 0.91314 0.88215 1.23011 0.94983 0.92179 0.94125 1.48407 1.05997 1.37693 1.44545 1.21178 0.83976 0.94778 0.92438 1.21932 0.99476 0.94778 1.01018 1.21465 0.96584 1.01454 0.95036 1.21586 1.01917 0.96284 0.96264 1.21458 0.96617 0.95997 1.00477 1.21934 0.99655 1.01201 0.94614 1.18886 0.81000 0.81285 0.79987 1.90912 1.83582 1.32119 1.39126 1.87393 1.33714 1.49037 1.54424 0.90723 0.92540 0.94356 0.91530 0.93622 0.94119 0.88765 0.95185 0.98223 0.93283 0.91403 0.90015 0.86928 0.86236 0.85698 0.93551 0.91385 0.89709 0.91139 0.90002 0.93707 0.89719 0.91316 0.91823 0.93614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 11.01 113.37 1.25 2.20 16 2 O -0.40 -16.57 7.94 -148.98 -1.18 -17.75 16 3 C 0.07 2.42 6.21 71.98 0.45 2.87 16 4 C 0.06 2.05 5.33 86.30 0.46 2.51 16 5 N -0.54 -22.26 4.65 -900.78 -4.19 -26.45 16 6 C 0.20 9.88 4.58 85.56 0.39 10.27 16 7 C -0.53 -27.41 7.35 25.60 0.19 -27.22 16 8 H 0.06 2.92 5.96 -2.91 -0.02 2.90 16 9 C 0.01 0.78 5.45 84.66 0.46 1.24 16 10 N -0.93 -54.09 13.29 21.45 0.29 -53.81 16 11 Si 0.95 42.15 29.54 68.60 2.03 44.18 16 12 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 13 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 14 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 15 C 0.06 2.01 4.35 86.31 0.38 2.38 16 16 C 0.08 2.57 3.84 30.96 0.12 2.69 16 17 H 0.10 3.79 6.21 -2.39 -0.01 3.77 16 18 C 0.08 1.82 7.31 86.63 0.63 2.45 16 19 N -0.62 -16.05 2.85 -927.37 -2.64 -18.69 16 20 C 0.18 3.49 2.79 44.99 0.13 3.61 16 21 C -0.13 -2.66 5.22 30.59 0.16 -2.50 16 22 C -0.11 -1.48 5.92 30.59 0.18 -1.30 16 23 C -0.12 -1.76 5.92 30.59 0.18 -1.58 16 24 C -0.11 -1.55 5.92 30.58 0.18 -1.36 16 25 C -0.14 -2.83 5.22 30.58 0.16 -2.67 16 26 C 0.63 22.63 8.31 129.91 1.08 23.71 16 27 O -0.57 -23.59 15.05 19.67 0.30 -23.30 16 28 O -0.34 -13.04 10.80 -47.36 -0.51 -13.55 16 29 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 30 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.04 1.65 5.87 -2.39 -0.01 1.64 16 35 H 0.09 2.76 7.77 -2.39 -0.02 2.74 16 36 H 0.03 1.72 5.69 -2.39 -0.01 1.71 16 37 H 0.00 -0.01 6.10 -2.39 -0.01 -0.03 16 38 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 39 H 0.07 2.29 6.84 -2.39 -0.02 2.27 16 40 H 0.08 2.41 7.84 -2.39 -0.02 2.39 16 41 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.12 2.07 7.73 -2.39 -0.02 2.06 16 43 H 0.13 1.66 8.10 -2.39 -0.02 1.65 16 44 H 0.05 1.27 6.78 -2.39 -0.02 1.26 16 45 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 52 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 53 H 0.04 1.29 6.82 -2.39 -0.02 1.28 16 Total: -1.00 -72.19 404.17 1.35 -70.84 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.88 Total: 21.21 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 6.39 Total: 17.32 kcal Atomic # 7 Polarization: -92.39 SS G_CDS: -6.55 Total: -98.94 kcal Atomic # 8 Polarization: -53.20 SS G_CDS: -1.40 Total: -54.59 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -72.19 1.35 -70.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827970638.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.681 kcal (2) G-P(sol) polarization free energy of solvation -72.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds