Wall clock time and date at job start Sat Apr 11 2020 06:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46897 * 111.00008 * 2 1 4 4 C 1.46895 * 111.00291 * 123.95688 * 2 1 3 5 5 C 1.52996 * 109.47285 * 169.99855 * 4 2 1 6 6 C 1.53009 * 109.47280 * 179.97438 * 5 4 2 7 7 N 1.46497 * 109.47037 * 179.97438 * 6 5 4 8 8 C 1.46495 * 120.00335 * 270.00052 * 7 6 5 9 9 C 1.50701 * 109.47234 * 273.52280 * 8 7 6 10 10 H 1.08005 * 119.99998 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00334 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99564 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00250 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.46872 * 89.99785 * 13 11 9 15 15 H 1.48496 * 109.46851 * 210.00065 * 13 11 9 16 16 H 1.48499 * 109.46681 * 329.99692 * 13 11 9 17 17 C 1.34778 * 119.99377 * 90.00487 * 7 6 5 18 18 O 1.21279 * 120.00420 * 4.97697 * 17 7 6 19 19 C 1.50705 * 119.99517 * 184.97370 * 17 7 6 20 20 H 1.08996 * 109.47046 * 32.29486 * 19 17 7 21 21 C 1.52997 * 109.47447 * 272.29366 * 19 17 7 22 22 C 1.52999 * 109.47463 * 180.02562 * 21 19 17 23 23 C 1.53003 * 109.46768 * 60.00167 * 22 21 19 24 24 C 1.53007 * 109.47006 * 299.99992 * 23 22 21 25 25 H 1.09001 * 109.46907 * 299.99935 * 24 23 22 26 26 C 1.50701 * 109.46656 * 180.02562 * 24 23 22 27 27 O 1.20827 * 119.99767 * 239.99939 * 26 24 23 28 28 O 1.34225 * 120.00188 * 60.00269 * 26 24 23 29 29 C 1.52999 * 109.46979 * 60.00417 * 24 23 22 30 30 H 1.09002 * 109.47057 * 296.04414 * 1 2 3 31 31 H 1.09003 * 109.47151 * 56.04265 * 1 2 3 32 32 H 1.08997 * 109.47157 * 176.04384 * 1 2 3 33 33 H 1.09004 * 109.47389 * 183.95465 * 3 2 1 34 34 H 1.09007 * 109.47199 * 303.95674 * 3 2 1 35 35 H 1.08999 * 109.47090 * 63.95738 * 3 2 1 36 36 H 1.09004 * 109.46853 * 49.99584 * 4 2 1 37 37 H 1.09003 * 109.46799 * 290.00178 * 4 2 1 38 38 H 1.09004 * 109.47396 * 60.00062 * 5 4 2 39 39 H 1.08997 * 109.47047 * 299.99955 * 5 4 2 40 40 H 1.09004 * 109.46679 * 59.99839 * 6 5 4 41 41 H 1.09003 * 109.46978 * 300.00430 * 6 5 4 42 42 H 1.09000 * 109.47255 * 33.51572 * 8 7 6 43 43 H 1.08999 * 109.47148 * 153.52223 * 8 7 6 44 44 H 0.96997 * 119.99723 * 179.97438 * 12 11 9 45 45 H 1.09002 * 109.46877 * 60.00009 * 21 19 17 46 46 H 1.09007 * 109.47230 * 300.00549 * 21 19 17 47 47 H 1.08996 * 109.47037 * 300.00123 * 22 21 19 48 48 H 1.09001 * 109.46980 * 179.97438 * 22 21 19 49 49 H 1.09001 * 109.46948 * 180.02562 * 23 22 21 50 50 H 1.08996 * 109.47377 * 60.00165 * 23 22 21 51 51 H 0.96706 * 117.00125 * 180.02562 * 28 26 24 52 52 H 1.08996 * 109.47265 * 59.99912 * 29 24 23 53 53 H 1.09001 * 109.46609 * 180.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5044 -0.9554 0.9702 6 6 4.0529 -1.7527 2.1553 7 7 5.4977 -1.9345 1.9948 8 6 6.0139 -3.1061 1.2828 9 6 6.1541 -4.2573 2.2452 10 1 5.8858 -4.1289 3.2835 11 6 6.6257 -5.4742 1.8006 12 7 6.9528 -5.6304 0.5363 13 14 6.8001 -6.9010 2.9937 14 1 5.5367 -7.6808 3.0206 15 1 7.9147 -7.7790 2.5557 16 1 7.0876 -6.3770 4.3531 17 6 6.3519 -1.0238 2.5022 18 8 5.9304 -0.1023 3.1687 19 6 7.8307 -1.1506 2.2414 20 1 7.9896 -1.5973 1.2600 21 6 8.4636 -2.0387 3.3145 22 6 9.9651 -2.1669 3.0501 23 6 10.6102 -0.7801 3.0903 24 6 9.9773 0.1081 2.0171 25 1 10.1367 -0.3385 1.0356 26 6 10.6132 1.4738 2.0564 27 8 9.9350 2.4499 2.2737 28 8 11.9329 1.6059 1.8497 29 6 8.4758 0.2362 2.2816 30 1 -0.3633 0.4512 0.9233 31 1 -0.3633 0.5740 -0.8524 32 1 -0.3633 -1.0252 -0.0709 33 1 3.0828 1.3432 -0.0709 34 1 1.5897 1.9164 -0.8525 35 1 1.7044 1.8723 0.9233 36 1 1.5089 -1.7407 1.1755 37 1 1.7975 -0.2248 2.0627 38 1 3.9910 0.0193 0.9322 39 1 3.7023 -1.4965 0.0450 40 1 3.5664 -2.7274 2.1938 41 1 3.8550 -1.2111 3.0804 42 1 5.3227 -3.3809 0.4861 43 1 6.9878 -2.8706 0.8538 44 1 7.2850 -6.4864 0.2236 45 1 8.0037 -3.0265 3.2862 46 1 8.3047 -1.5920 4.2960 47 1 10.1244 -2.6134 2.0686 48 1 10.4160 -2.7993 3.8149 49 1 11.6799 -0.8714 2.9015 50 1 10.4510 -0.3336 4.0718 51 1 12.2953 2.5018 1.8850 52 1 8.3166 0.6827 3.2631 53 1 8.0249 0.8686 1.5168 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830600310.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:46 Heat of formation + Delta-G solvation = -168.667722 kcal Electronic energy + Delta-G solvation = -31396.543288 eV Core-core repulsion = 27266.267048 eV Total energy + Delta-G solvation = -4130.276240 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.76149 -40.92907 -38.86844 -38.28369 -37.07374 -36.83927 -34.73116 -33.31940 -32.12047 -31.77936 -29.18661 -28.52066 -27.37068 -25.50415 -24.98747 -24.63590 -23.17025 -22.22972 -21.78468 -20.81917 -19.90220 -18.94691 -18.44628 -18.11353 -17.58364 -17.04432 -16.78138 -16.53471 -16.31665 -16.20772 -15.96883 -15.55903 -15.40264 -15.06844 -14.83745 -14.55598 -14.49866 -14.25923 -13.90994 -13.50251 -13.42545 -13.38417 -13.27956 -13.08818 -12.95066 -12.85407 -12.67441 -12.61524 -12.55681 -12.41831 -12.38719 -12.31416 -12.14525 -11.88438 -11.78713 -11.65031 -11.60495 -11.52233 -11.36667 -11.08267 -10.60071 -10.38344 -9.43168 -9.34916 -8.13603 -6.25455 1.19902 1.44600 1.48460 1.56149 1.76033 2.04503 2.34907 2.49514 3.02553 3.17123 3.50272 3.70005 3.85033 3.88969 4.01284 4.10065 4.16128 4.21619 4.24438 4.39852 4.40704 4.43941 4.45630 4.47752 4.50525 4.60239 4.61920 4.64935 4.70233 4.74900 4.78850 4.95687 4.97484 4.99486 5.00983 5.05885 5.12035 5.17435 5.18514 5.23613 5.30229 5.33131 5.50373 5.52310 5.62721 5.72319 5.88655 6.02092 6.09529 6.12684 6.62291 6.87044 7.01772 7.34289 7.47147 8.92062 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.006515 B = 0.004423 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4296.911347 B = 6329.224040 C = 9992.289129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.564 5.564 3 C 0.023 3.977 4 C 0.066 3.934 5 C -0.113 4.113 6 C 0.120 3.880 7 N -0.596 5.596 8 C 0.251 3.749 9 C -0.534 4.534 10 H 0.050 0.950 11 C 0.031 3.969 12 N -0.916 5.916 13 Si 0.947 3.053 14 H -0.281 1.281 15 H -0.281 1.281 16 H -0.270 1.270 17 C 0.515 3.485 18 O -0.598 6.598 19 C -0.092 4.092 20 H 0.097 0.903 21 C -0.112 4.112 22 C -0.107 4.107 23 C -0.100 4.100 24 C -0.076 4.076 25 H 0.129 0.871 26 C 0.493 3.507 27 O -0.553 6.553 28 O -0.504 6.504 29 C -0.074 4.074 30 H 0.028 0.972 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.025 0.975 36 H 0.083 0.917 37 H 0.034 0.966 38 H 0.048 0.952 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.016 0.984 43 H 0.039 0.961 44 H 0.267 0.733 45 H 0.075 0.925 46 H 0.052 0.948 47 H 0.072 0.928 48 H 0.083 0.917 49 H 0.100 0.900 50 H 0.065 0.935 51 H 0.427 0.573 52 H 0.060 0.940 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.685 9.341 -0.048 9.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.288 5.288 3 C -0.125 4.125 4 C -0.063 4.063 5 C -0.152 4.152 6 C -0.004 4.004 7 N -0.325 5.325 8 C 0.131 3.869 9 C -0.572 4.572 10 H 0.069 0.931 11 C -0.170 4.170 12 N -0.555 5.555 13 Si 0.773 3.227 14 H -0.207 1.207 15 H -0.206 1.206 16 H -0.195 1.195 17 C 0.304 3.696 18 O -0.481 6.481 19 C -0.113 4.113 20 H 0.115 0.885 21 C -0.150 4.150 22 C -0.144 4.144 23 C -0.138 4.138 24 C -0.095 4.095 25 H 0.147 0.853 26 C 0.337 3.663 27 O -0.443 6.443 28 O -0.318 6.318 29 C -0.113 4.113 30 H 0.047 0.953 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.044 0.956 36 H 0.102 0.898 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.034 0.966 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.071 0.929 47 H 0.091 0.909 48 H 0.102 0.898 49 H 0.119 0.881 50 H 0.083 0.917 51 H 0.288 0.712 52 H 0.078 0.922 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.341 9.299 -0.243 9.592 hybrid contribution -0.305 0.137 1.164 1.211 sum 2.036 9.436 0.921 9.697 Atomic orbital electron populations 1.22431 0.85834 1.02933 1.01085 1.61960 1.09232 1.14353 1.43222 1.22425 1.00596 0.88545 1.00932 1.21965 0.94219 0.98737 0.91351 1.21747 0.95444 0.99573 0.98389 1.21269 0.80680 1.00331 0.98088 1.48220 1.06106 1.23534 1.54659 1.19173 0.94789 0.81474 0.91485 1.21512 1.44007 0.96185 0.95530 0.93131 1.25482 0.94788 1.00413 0.96330 1.69998 1.44297 1.25772 1.15409 0.85727 0.77732 0.79626 0.79641 1.20657 1.20600 1.19477 1.20930 0.89683 0.80770 0.78187 1.90565 1.80197 1.35501 1.41832 1.21198 0.90262 0.97385 1.02490 0.88472 1.21544 0.97138 0.99988 0.96356 1.21461 0.93020 0.96556 1.03376 1.21529 1.00961 0.94255 0.97040 1.21073 0.93963 0.89896 1.04606 0.85344 1.23525 0.80348 0.91779 0.70650 1.90727 1.64600 1.42342 1.46668 1.84498 1.23674 1.40568 1.83030 1.21098 0.92794 0.94829 1.02532 0.95325 0.90159 0.90822 0.92462 0.89903 0.95607 0.89822 0.94731 0.93285 0.92048 0.90422 0.91786 0.96564 0.94308 0.92404 0.90681 0.92921 0.90906 0.89824 0.88132 0.91661 0.71162 0.92157 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.57 127.69 1.22 1.71 16 2 N -0.56 -14.49 5.02 -948.86 -4.76 -19.26 16 3 C 0.02 0.55 9.32 127.69 1.19 1.74 16 4 C 0.07 1.82 4.96 86.30 0.43 2.25 16 5 C -0.11 -3.75 5.46 30.60 0.17 -3.58 16 6 C 0.12 4.51 5.46 86.38 0.47 4.98 16 7 N -0.60 -25.01 2.46 -826.14 -2.03 -27.04 16 8 C 0.25 11.54 4.99 85.63 0.43 11.97 16 9 C -0.53 -26.27 7.52 25.60 0.19 -26.08 16 10 H 0.05 2.57 7.81 -2.91 -0.02 2.54 16 11 C 0.03 1.53 5.46 84.66 0.46 1.99 16 12 N -0.92 -47.96 13.29 21.45 0.28 -47.67 16 13 Si 0.95 40.05 29.54 68.60 2.03 42.08 16 14 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 15 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 16 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 17 C 0.51 21.60 6.75 87.66 0.59 22.19 16 18 O -0.60 -27.80 15.69 -3.03 -0.05 -27.85 16 19 C -0.09 -3.27 1.81 -11.54 -0.02 -3.29 16 20 H 0.10 3.45 6.06 -2.39 -0.01 3.44 16 21 C -0.11 -3.77 5.17 30.59 0.16 -3.61 16 22 C -0.11 -2.71 5.92 30.60 0.18 -2.53 16 23 C -0.10 -2.16 5.14 30.60 0.16 -2.00 16 24 C -0.08 -1.86 2.63 -11.54 -0.03 -1.89 16 25 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 26 C 0.49 12.00 7.63 71.24 0.54 12.54 16 27 O -0.55 -17.72 16.74 21.96 0.37 -17.36 16 28 O -0.50 -8.38 13.33 -51.37 -0.68 -9.06 16 29 C -0.07 -2.39 3.34 30.59 0.10 -2.29 16 30 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.08 1.34 8.12 -2.39 -0.02 1.32 16 32 H 0.07 1.36 8.12 -2.39 -0.02 1.34 16 33 H 0.06 1.53 6.47 -2.38 -0.02 1.52 16 34 H 0.08 1.64 8.12 -2.38 -0.02 1.62 16 35 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.08 2.17 8.06 -2.38 -0.02 2.15 16 37 H 0.03 0.95 8.12 -2.39 -0.02 0.93 16 38 H 0.05 1.75 6.55 -2.38 -0.02 1.73 16 39 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.08 2.88 8.07 -2.38 -0.02 2.86 16 41 H 0.06 2.47 7.36 -2.39 -0.02 2.45 16 42 H 0.02 0.81 8.10 -2.39 -0.02 0.79 16 43 H 0.04 1.82 5.64 -2.39 -0.01 1.80 16 44 H 0.27 13.34 8.31 -92.71 -0.77 12.57 16 45 H 0.07 2.97 6.03 -2.39 -0.01 2.96 16 46 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 47 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.10 1.69 8.11 -2.39 -0.02 1.67 16 50 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 51 H 0.43 3.41 9.10 -74.05 -0.67 2.74 16 52 H 0.06 2.18 7.82 -2.39 -0.02 2.16 16 53 H 0.06 1.92 8.10 -2.39 -0.02 1.90 16 Total: -1.00 -64.93 417.71 1.61 -63.32 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.21 Total: 28.74 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 6.24 Total: 14.10 kcal Atomic # 7 Polarization: -87.47 SS G_CDS: -6.51 Total: -93.97 kcal Atomic # 8 Polarization: -53.90 SS G_CDS: -0.36 Total: -54.27 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Total: -64.93 1.61 -63.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830600310.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.348 kcal (2) G-P(sol) polarization free energy of solvation -64.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds