Wall clock time and date at job start Sat Apr 11 2020 06:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47134 * 2 1 4 4 C 1.52998 * 109.47356 * 240.00224 * 2 1 3 5 5 O 1.45200 * 109.47282 * 119.99985 * 2 1 3 6 6 C 1.34642 * 116.99678 * 59.99910 * 5 2 1 7 7 O 1.21505 * 120.00222 * 0.02562 * 6 5 2 8 8 N 1.34783 * 119.99658 * 180.02562 * 6 5 2 9 9 C 1.46500 * 119.99423 * 180.02562 * 8 6 5 10 10 H 1.08998 * 112.91024 * 23.75211 * 9 8 6 11 11 C 1.53778 * 113.60924 * 155.00218 * 9 8 6 12 12 C 1.53781 * 87.08383 * 89.11172 * 11 9 8 13 13 H 1.08995 * 113.61804 * 270.79872 * 12 11 9 14 14 C 1.50700 * 113.61390 * 139.97755 * 12 11 9 15 15 O 1.21283 * 120.00275 * 0.02562 * 14 12 11 16 16 N 1.34777 * 120.00075 * 180.02562 * 14 12 11 17 17 C 1.46499 * 120.00065 * 180.02562 * 16 14 12 18 18 C 1.53004 * 109.47198 * 180.02562 * 17 16 14 19 19 C 1.52998 * 109.47200 * 59.99818 * 18 17 16 20 20 C 1.53005 * 109.46471 * 299.99791 * 18 17 16 21 21 C 1.50701 * 109.47211 * 180.02562 * 18 17 16 22 22 H 1.08002 * 119.99761 * 359.97438 * 21 18 17 23 23 C 1.37871 * 119.99694 * 180.27574 * 21 18 17 24 24 N 1.31514 * 120.00482 * 359.71466 * 23 21 18 25 25 Si 1.86801 * 119.99746 * 179.72062 * 23 21 18 26 26 H 1.48504 * 109.47209 * 89.99886 * 25 23 21 27 27 H 1.48501 * 109.47358 * 209.99377 * 25 23 21 28 28 H 1.48496 * 109.47341 * 329.99989 * 25 23 21 29 29 C 1.53776 * 87.07799 * 25.43325 * 12 11 9 30 30 H 1.08992 * 109.47187 * 299.99849 * 1 2 3 31 31 H 1.09005 * 109.47014 * 60.00250 * 1 2 3 32 32 H 1.09005 * 109.47022 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47500 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47269 * 299.99958 * 3 2 1 35 35 H 1.08999 * 109.47238 * 59.99723 * 3 2 1 36 36 H 1.09004 * 109.46923 * 299.99636 * 4 2 1 37 37 H 1.09005 * 109.47446 * 59.99790 * 4 2 1 38 38 H 1.09006 * 109.47407 * 180.02562 * 4 2 1 39 39 H 0.96999 * 120.00224 * 0.02562 * 8 6 5 40 40 H 1.08996 * 113.61801 * 334.56512 * 11 9 8 41 41 H 1.09007 * 113.61720 * 203.66188 * 11 9 8 42 42 H 0.97000 * 120.00140 * 0.02562 * 16 14 12 43 43 H 1.09000 * 109.47602 * 60.00059 * 17 16 14 44 44 H 1.09007 * 109.47337 * 299.99774 * 17 16 14 45 45 H 1.09004 * 109.46783 * 180.02562 * 19 18 17 46 46 H 1.09005 * 109.46870 * 300.00189 * 19 18 17 47 47 H 1.08998 * 109.47156 * 60.00128 * 19 18 17 48 48 H 1.08995 * 109.47438 * 299.99599 * 20 18 17 49 49 H 1.08996 * 109.47069 * 60.00459 * 20 18 17 50 50 H 1.09004 * 109.46658 * 179.97438 * 20 18 17 51 51 H 0.96995 * 120.00207 * 179.97438 * 24 23 21 52 52 H 1.09004 * 113.62133 * 89.11622 * 29 12 11 53 53 H 1.09004 * 113.61128 * 220.01866 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5036 8 7 2.0672 -2.6655 2.4172 9 6 1.6740 -4.0669 2.5830 10 1 1.4213 -4.5512 1.6398 11 6 2.6470 -4.8809 3.4522 12 6 1.8053 -4.4458 4.6634 13 1 2.1346 -3.5075 5.1096 14 6 1.6025 -5.5384 5.6814 15 8 2.0869 -6.6352 5.4985 16 7 0.8829 -5.2968 6.7950 17 6 0.6862 -6.3588 7.7848 18 6 -0.1604 -5.8263 8.9427 19 6 -1.5194 -5.3663 8.4114 20 6 0.5576 -4.6448 9.5981 21 6 -0.3622 -6.9186 9.9612 22 1 0.0698 -7.8950 9.7987 23 6 -1.1035 -6.6731 11.0975 24 7 -1.6299 -5.4842 11.2953 25 14 -1.3602 -8.0293 12.3562 26 1 -0.2670 -7.9860 13.3604 27 1 -2.6653 -7.8325 13.0368 28 1 -1.3522 -9.3474 11.6724 29 6 0.6273 -4.2863 3.6880 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6766 1.9563 0.8899 36 1 1.6767 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1393 38 1 3.1301 -0.7216 -1.2490 39 1 2.6262 -2.2364 3.0837 40 1 3.6620 -4.4837 3.4605 41 1 2.6127 -5.9532 3.2591 42 1 0.4951 -4.4197 6.9412 43 1 1.6544 -6.6869 8.1631 44 1 0.1743 -7.2004 7.3180 45 1 -2.1224 -4.9865 9.2364 46 1 -1.3730 -4.5761 7.6750 47 1 -2.0309 -6.2079 7.9445 48 1 1.5257 -4.9726 9.9767 49 1 0.7039 -3.8547 8.8617 50 1 -0.0457 -4.2652 10.4228 51 1 -2.1517 -5.3117 12.0945 52 1 0.0406 -5.1960 3.5593 53 1 0.0116 -3.4090 3.8867 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854908994.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:53 Heat of formation + Delta-G solvation = -130.649484 kcal Electronic energy + Delta-G solvation = -30218.249721 eV Core-core repulsion = 26089.622075 eV Total energy + Delta-G solvation = -4128.627645 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.00108 -41.22476 -39.49325 -38.12225 -37.54419 -35.27855 -34.95812 -33.87328 -32.67969 -28.31997 -28.29156 -28.23531 -27.55721 -27.30687 -26.72868 -25.91855 -23.77549 -21.93935 -21.12187 -20.61791 -20.21826 -19.38479 -18.41827 -17.71260 -17.49194 -17.16364 -16.80178 -16.57541 -16.52118 -16.17348 -15.61119 -15.35914 -15.11771 -15.02043 -14.77106 -14.44111 -14.27568 -14.01349 -13.76341 -13.39469 -13.32398 -13.17144 -13.11475 -13.02967 -12.87730 -12.83509 -12.82013 -12.67821 -12.59983 -12.45644 -12.27373 -12.24568 -12.13801 -11.71739 -11.56653 -11.47682 -11.35166 -11.24461 -11.08266 -10.76316 -10.62037 -10.39661 -10.17124 -9.89551 -8.02352 -6.17871 1.14358 1.41780 1.44898 1.52868 1.69708 1.77248 2.35953 2.52121 3.13664 3.21105 3.39170 3.49278 3.76886 3.79157 3.84787 3.87361 3.99040 4.23693 4.44512 4.49671 4.52742 4.60114 4.65735 4.69778 4.72750 4.76964 4.81174 4.85810 4.87776 4.91499 4.92310 4.96996 5.01540 5.06346 5.06609 5.12386 5.19015 5.20286 5.32447 5.35977 5.39117 5.48036 5.62250 5.64525 5.67406 5.67876 6.15958 6.22565 6.42379 6.43955 6.73105 6.86523 7.36832 7.37821 7.49750 8.96327 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023276 B = 0.001875 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.656734 B =14931.785406 C =15569.549053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.125 3.875 3 C -0.136 4.136 4 C -0.180 4.180 5 O -0.367 6.367 6 C 0.649 3.351 7 O -0.592 6.592 8 N -0.681 5.681 9 C 0.147 3.853 10 H 0.103 0.897 11 C -0.112 4.112 12 C -0.131 4.131 13 H 0.141 0.859 14 C 0.512 3.488 15 O -0.592 6.592 16 N -0.709 5.709 17 C 0.147 3.853 18 C 0.050 3.950 19 C -0.120 4.120 20 C -0.120 4.120 21 C -0.527 4.527 22 H 0.043 0.957 23 C 0.027 3.973 24 N -0.899 5.899 25 Si 0.944 3.056 26 H -0.279 1.279 27 H -0.283 1.283 28 H -0.277 1.277 29 C -0.130 4.130 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.419 0.581 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.408 0.592 43 H 0.037 0.963 44 H 0.035 0.965 45 H 0.062 0.938 46 H 0.038 0.962 47 H 0.016 0.984 48 H 0.018 0.982 49 H 0.038 0.962 50 H 0.061 0.939 51 H 0.260 0.740 52 H 0.089 0.911 53 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.452 15.918 -22.377 28.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.089 3.911 3 C -0.193 4.193 4 C -0.237 4.237 5 O -0.282 6.282 6 C 0.402 3.598 7 O -0.482 6.482 8 N -0.340 5.340 9 C 0.042 3.958 10 H 0.121 0.879 11 C -0.150 4.150 12 C -0.152 4.152 13 H 0.159 0.841 14 C 0.300 3.700 15 O -0.473 6.473 16 N -0.360 5.360 17 C 0.023 3.977 18 C 0.049 3.951 19 C -0.178 4.178 20 C -0.178 4.178 21 C -0.566 4.566 22 H 0.061 0.939 23 C -0.173 4.173 24 N -0.537 5.537 25 Si 0.771 3.229 26 H -0.205 1.205 27 H -0.209 1.209 28 H -0.202 1.202 29 C -0.169 4.169 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.119 0.881 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.256 0.744 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.245 0.755 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.080 0.920 46 H 0.057 0.943 47 H 0.035 0.965 48 H 0.037 0.963 49 H 0.057 0.943 50 H 0.080 0.920 51 H 0.069 0.931 52 H 0.108 0.892 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.323 15.064 -22.812 28.300 hybrid contribution -0.356 -0.659 1.496 1.673 sum 6.966 14.405 -21.316 26.653 Atomic orbital electron populations 1.22479 0.94107 1.03679 1.03529 1.22397 0.94473 0.92695 0.81526 1.21885 1.02478 0.90701 1.04269 1.22476 1.01675 1.02223 0.97320 1.86318 1.71515 1.22975 1.47382 1.18242 0.78504 0.80838 0.82193 1.90904 1.42083 1.70913 1.44338 1.44306 1.54925 1.11507 1.23276 1.21641 0.95708 0.79417 0.99008 0.87939 1.23167 0.98970 1.01230 0.91668 1.22943 1.00429 0.98346 0.93435 0.84142 1.21128 0.77124 0.89541 0.82242 1.90648 1.51482 1.27112 1.78039 1.46180 1.53118 1.16054 1.20661 1.21234 0.98256 0.89306 0.88885 1.18367 0.91914 0.94073 0.90720 1.21664 0.99028 0.97882 0.99222 1.21662 0.98243 0.97206 1.00660 1.21272 1.32696 0.97484 1.05137 0.93854 1.25453 0.95308 0.97266 0.99250 1.69902 1.34895 1.21454 1.27477 0.85776 0.77373 0.80176 0.79574 1.20481 1.20862 1.20173 1.23351 0.96025 1.03504 0.94030 0.92021 0.89269 0.91928 0.91103 0.88119 0.91265 0.91919 0.89264 0.91851 0.74383 0.88383 0.88458 0.75462 0.94448 0.94654 0.91956 0.94349 0.96461 0.96309 0.94263 0.92016 0.93054 0.89228 0.89244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.75 8.37 71.98 0.60 -2.15 16 2 C 0.13 1.84 1.13 -10.80 -0.01 1.83 16 3 C -0.14 -1.21 8.85 71.98 0.64 -0.57 16 4 C -0.18 -2.61 8.37 71.98 0.60 -2.01 16 5 O -0.37 -6.66 9.94 -55.51 -0.55 -7.21 16 6 C 0.65 13.27 8.06 129.79 1.05 14.31 16 7 O -0.59 -15.22 11.48 19.82 0.23 -14.99 16 8 N -0.68 -10.62 5.27 -567.60 -2.99 -13.61 16 9 C 0.15 2.53 4.32 45.52 0.20 2.72 16 10 H 0.10 2.03 7.47 -2.39 -0.02 2.01 16 11 C -0.11 -1.99 7.15 31.12 0.22 -1.77 16 12 C -0.13 -2.56 4.03 -11.02 -0.04 -2.60 16 13 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 14 C 0.51 15.77 7.35 87.66 0.64 16.42 16 15 O -0.59 -23.28 15.90 -3.04 -0.05 -23.32 16 16 N -0.71 -23.15 4.96 -463.04 -2.30 -25.44 16 17 C 0.15 6.16 4.50 86.38 0.39 6.54 16 18 C 0.05 2.27 0.50 -52.93 -0.03 2.25 16 19 C -0.12 -5.27 8.08 71.98 0.58 -4.69 16 20 C -0.12 -5.21 8.08 71.98 0.58 -4.63 16 21 C -0.53 -27.76 8.01 25.60 0.21 -27.56 16 22 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 23 C 0.03 1.42 5.15 84.65 0.44 1.85 16 24 N -0.90 -47.66 9.35 21.45 0.20 -47.45 16 25 Si 0.94 42.57 29.54 68.60 2.03 44.60 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 27 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 28 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 29 C -0.13 -2.41 7.43 31.12 0.23 -2.18 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.06 1.31 5.88 -2.38 -0.01 1.30 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.06 1.27 5.88 -2.38 -0.01 1.25 16 37 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.42 4.54 8.81 -92.71 -0.82 3.73 16 40 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.10 2.13 7.43 -2.38 -0.02 2.11 16 42 H 0.41 11.51 6.16 -92.71 -0.57 10.94 16 43 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 45 H 0.06 3.05 6.06 -2.38 -0.01 3.04 16 46 H 0.04 1.39 6.86 -2.38 -0.02 1.37 16 47 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 50 H 0.06 3.00 6.08 -2.38 -0.01 2.99 16 51 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 52 H 0.09 1.89 8.09 -2.38 -0.02 1.87 16 53 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -65.76 412.77 2.38 -63.38 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: -0.48 Total: 26.29 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 6.29 Total: -2.22 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -5.08 Total: -86.51 kcal Atomic # 8 Polarization: -45.15 SS G_CDS: -0.37 Total: -45.52 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -65.76 2.38 -63.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854908994.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.273 kcal (2) G-P(sol) polarization free energy of solvation -65.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds