Wall clock time and date at job start Sat Apr 11 2020 06:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46503 * 120.00222 * 2 1 4 4 C 1.50697 * 109.46535 * 269.99585 * 3 2 1 5 5 H 1.07996 * 120.00601 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99941 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99605 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00095 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.46971 * 90.00488 * 8 6 4 10 10 H 1.48504 * 109.46899 * 209.99894 * 8 6 4 11 11 H 1.48495 * 109.47257 * 330.00129 * 8 6 4 12 12 C 1.34777 * 119.99840 * 179.97438 * 2 1 3 13 13 O 1.21282 * 120.00263 * 175.33827 * 12 2 1 14 14 C 1.50698 * 120.00045 * 355.61818 * 12 2 1 15 15 H 1.09003 * 109.46983 * 316.96705 * 14 12 2 16 16 C 1.53003 * 109.47417 * 76.96250 * 14 12 2 17 17 C 1.52995 * 109.47123 * 179.97438 * 16 14 12 18 18 C 1.52997 * 109.47535 * 300.00671 * 17 16 14 19 19 H 1.09004 * 109.47268 * 299.99696 * 18 17 16 20 20 N 1.46504 * 109.47409 * 180.02562 * 18 17 16 21 21 C 1.34777 * 120.00080 * 84.99854 * 20 18 17 22 22 O 1.21521 * 119.99816 * 359.97438 * 21 20 18 23 23 O 1.34634 * 120.00158 * 180.02562 * 21 20 18 24 24 C 1.45203 * 116.99963 * 179.97438 * 23 21 20 25 25 C 1.53002 * 109.46869 * 60.00148 * 24 23 21 26 26 C 1.53008 * 109.46696 * 179.97438 * 24 23 21 27 27 C 1.52992 * 109.47388 * 299.99643 * 24 23 21 28 28 C 1.52998 * 109.47273 * 59.99814 * 18 17 16 29 29 C 1.52997 * 109.47341 * 196.96983 * 14 12 2 30 30 H 1.08996 * 109.47430 * 270.91519 * 1 2 3 31 31 H 1.09003 * 109.47021 * 30.91003 * 1 2 3 32 32 H 1.08995 * 109.47489 * 150.90505 * 1 2 3 33 33 H 1.08988 * 109.47235 * 29.99712 * 3 2 1 34 34 H 1.09002 * 109.46902 * 150.00033 * 3 2 1 35 35 H 0.96999 * 120.00071 * 179.97438 * 7 6 4 36 36 H 1.08994 * 109.47268 * 300.00178 * 16 14 12 37 37 H 1.09003 * 109.46673 * 60.00265 * 16 14 12 38 38 H 1.08995 * 109.47387 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.47083 * 60.00574 * 17 16 14 40 40 H 0.96997 * 120.00094 * 264.99639 * 20 18 17 41 41 H 1.08994 * 109.47359 * 59.99658 * 25 24 23 42 42 H 1.09001 * 109.46972 * 180.02562 * 25 24 23 43 43 H 1.08999 * 109.46880 * 299.99204 * 25 24 23 44 44 H 1.09001 * 109.47040 * 60.00394 * 26 24 23 45 45 H 1.09001 * 109.46519 * 180.02562 * 26 24 23 46 46 H 1.09000 * 109.47145 * 300.00126 * 26 24 23 47 47 H 1.08997 * 109.47072 * 59.99728 * 27 24 23 48 48 H 1.08993 * 109.47312 * 180.02562 * 27 24 23 49 49 H 1.09001 * 109.47175 * 300.00112 * 27 24 23 50 50 H 1.09001 * 109.46857 * 180.02562 * 28 18 17 51 51 H 1.09003 * 109.46994 * 60.00312 * 28 18 17 52 52 H 1.09003 * 109.46856 * 299.99800 * 29 14 12 53 53 H 1.09002 * 109.47402 * 59.99797 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0982 1.0956 -2.2417 6 6 3.1261 2.8778 -1.6729 7 7 3.5534 3.6180 -0.6733 8 14 3.4381 3.4165 -3.4341 9 1 2.3081 4.2588 -3.9017 10 1 4.6982 4.2000 -3.4962 11 1 3.5563 2.2191 -4.3044 12 6 2.1388 -1.1672 0.0005 13 8 3.3486 -1.1691 -0.0848 14 6 1.3886 -2.4703 0.1008 15 1 0.6045 -2.3812 0.8528 16 6 0.7603 -2.8028 -1.2541 17 6 -0.0008 -4.1261 -1.1523 18 6 0.9666 -5.2414 -0.7513 19 1 1.7507 -5.3302 -1.5034 20 7 0.2379 -6.5087 -0.6545 21 6 0.0368 -7.2564 -1.7577 22 8 0.4595 -6.8791 -2.8327 23 8 -0.6333 -8.4207 -1.6688 24 6 -0.8131 -9.1733 -2.8975 25 6 0.5553 -9.5300 -3.4818 26 6 -1.5905 -10.4571 -2.6001 27 6 -1.5928 -8.3262 -3.9050 28 6 1.5949 -4.9090 0.6036 29 6 2.3556 -3.5860 0.5021 30 1 -0.3634 0.0164 1.0275 31 1 -0.3633 0.8817 -0.5279 32 1 -0.3634 -0.8979 -0.4997 33 1 1.6085 2.0283 0.5137 34 1 3.1499 1.1383 0.5138 35 1 4.0303 4.4438 -0.8506 36 1 0.0713 -2.0080 -1.5399 37 1 1.5443 -2.8919 -2.0060 38 1 -0.4481 -4.3632 -2.1176 39 1 -0.7849 -4.0374 -0.4003 40 1 -0.0998 -6.8096 0.2035 41 1 1.1107 -10.1335 -2.7640 42 1 0.4204 -10.0946 -4.4044 43 1 1.1094 -8.6156 -3.6937 44 1 -2.5653 -10.2033 -2.1835 45 1 -1.7250 -11.0223 -3.5224 46 1 -1.0346 -11.0605 -1.8824 47 1 -1.0387 -7.4118 -4.1168 48 1 -1.7281 -8.8913 -4.8272 49 1 -2.5676 -8.0721 -3.4887 50 1 2.2844 -5.7034 0.8890 51 1 0.8108 -4.8203 1.3556 52 1 3.1397 -3.6751 -0.2498 53 1 2.8031 -3.3492 1.4674 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864994959.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:58 Heat of formation + Delta-G solvation = -159.229485 kcal Electronic energy + Delta-G solvation = -30786.844133 eV Core-core repulsion = 26656.977166 eV Total energy + Delta-G solvation = -4129.866967 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.88065 -41.16180 -39.34354 -37.73227 -36.59685 -35.57032 -34.84059 -34.49332 -31.85871 -31.02131 -29.42589 -28.33949 -28.26098 -27.35932 -25.62595 -24.16893 -23.75876 -22.59050 -21.41427 -20.76231 -19.92000 -19.09800 -18.67795 -17.79150 -17.73141 -17.22044 -17.12523 -16.73318 -16.29601 -16.00707 -15.68636 -15.44353 -15.10627 -14.95935 -14.74292 -14.50232 -14.23510 -14.18949 -13.69187 -13.52036 -13.42123 -13.30825 -13.26175 -13.06646 -13.01805 -12.87912 -12.82730 -12.80785 -12.54455 -12.50720 -12.48553 -12.27586 -12.23797 -12.19362 -12.00492 -11.71707 -11.47348 -11.34660 -11.28264 -11.06544 -10.65172 -10.43127 -10.11768 -9.38800 -8.23312 -6.37659 1.18981 1.33971 1.37186 1.47516 1.81514 1.85174 2.32396 2.47816 3.05602 3.15906 3.61905 3.66111 3.73269 3.78672 3.83168 3.98026 4.03374 4.16762 4.28680 4.33585 4.39106 4.43793 4.51084 4.56513 4.63775 4.66032 4.72509 4.78348 4.79340 4.84346 4.87534 4.91264 4.94354 4.97676 5.05388 5.10364 5.14579 5.18685 5.20646 5.23792 5.29819 5.30974 5.35508 5.39248 5.49961 5.56910 5.64312 5.85833 6.06260 6.48851 6.69748 6.82668 7.28146 7.42025 7.52112 8.83376 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018995 B = 0.002153 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.711028 B =13001.465813 C =13683.527658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.540 4.540 5 H 0.049 0.951 6 C 0.006 3.994 7 N -0.927 5.927 8 Si 0.966 3.034 9 H -0.262 1.262 10 H -0.280 1.280 11 H -0.276 1.276 12 C 0.496 3.504 13 O -0.599 6.599 14 C -0.092 4.092 15 H 0.126 0.874 16 C -0.105 4.105 17 C -0.114 4.114 18 C 0.164 3.836 19 H 0.064 0.936 20 N -0.692 5.692 21 C 0.643 3.357 22 O -0.595 6.595 23 O -0.367 6.367 24 C 0.126 3.874 25 C -0.181 4.181 26 C -0.135 4.135 27 C -0.180 4.180 28 C -0.108 4.108 29 C -0.094 4.094 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.024 0.976 34 H -0.004 1.004 35 H 0.267 0.733 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.419 0.581 41 H 0.062 0.938 42 H 0.088 0.912 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.099 0.901 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.087 0.913 49 H 0.064 0.936 50 H 0.085 0.915 51 H 0.104 0.896 52 H 0.047 0.953 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.087 -28.797 1.315 33.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.342 5.342 3 C 0.137 3.863 4 C -0.578 4.578 5 H 0.068 0.932 6 C -0.193 4.193 7 N -0.567 5.567 8 Si 0.790 3.210 9 H -0.186 1.186 10 H -0.205 1.205 11 H -0.201 1.201 12 C 0.285 3.715 13 O -0.480 6.480 14 C -0.113 4.113 15 H 0.144 0.856 16 C -0.143 4.143 17 C -0.152 4.152 18 C 0.060 3.940 19 H 0.082 0.918 20 N -0.351 5.351 21 C 0.397 3.603 22 O -0.486 6.486 23 O -0.282 6.282 24 C 0.090 3.910 25 C -0.238 4.238 26 C -0.192 4.192 27 C -0.238 4.238 28 C -0.145 4.145 29 C -0.133 4.133 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.042 0.958 34 H 0.014 0.986 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.117 0.883 40 H 0.257 0.743 41 H 0.081 0.919 42 H 0.106 0.894 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.118 0.882 46 H 0.089 0.911 47 H 0.078 0.922 48 H 0.106 0.894 49 H 0.083 0.917 50 H 0.104 0.896 51 H 0.122 0.878 52 H 0.066 0.934 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.223 -28.508 0.755 32.327 hybrid contribution 0.772 1.001 -0.712 1.450 sum -14.452 -27.507 0.044 31.073 Atomic orbital electron populations 1.22120 0.78052 1.04145 1.02835 1.48199 1.08335 1.06366 1.71251 1.18740 0.91033 0.80694 0.95850 1.21682 1.36715 1.06330 0.93111 0.93230 1.25856 0.94999 0.96517 1.01907 1.70044 1.39008 1.14787 1.32894 0.85441 0.78184 0.78124 0.79216 1.18646 1.20512 1.20125 1.21499 0.87717 0.86621 0.75672 1.90628 1.17198 1.88109 1.52112 1.21388 0.99054 0.90246 1.00617 0.85568 1.21512 0.99583 0.98462 0.94791 1.21833 0.98290 0.92330 1.02768 1.20951 0.93267 0.80713 0.99045 0.91768 1.44716 1.59559 1.21577 1.09256 1.18356 0.77422 0.79967 0.84590 1.90927 1.55739 1.73696 1.28267 1.86303 1.70110 1.31937 1.39823 1.22367 0.96440 0.91263 0.80948 1.22480 0.96324 1.02746 1.02272 1.21878 1.00022 0.93193 1.04098 1.22469 1.00191 1.01395 0.99700 1.21713 1.00815 0.96452 0.95567 1.21236 0.97036 0.93022 1.01961 0.90788 0.91832 0.88377 0.95762 0.98600 0.92410 0.89870 0.93852 0.92224 0.88317 0.74319 0.91871 0.89362 0.92269 0.91000 0.88242 0.91100 0.92181 0.89419 0.91738 0.89641 0.87768 0.93440 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.07 9.89 127.77 1.26 3.33 16 2 N -0.61 -26.10 2.86 -851.16 -2.43 -28.53 16 3 C 0.26 14.23 5.13 85.63 0.44 14.67 16 4 C -0.54 -31.96 9.39 25.60 0.24 -31.72 16 5 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 6 C 0.01 0.36 5.46 84.66 0.46 0.82 16 7 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 8 Si 0.97 46.17 29.54 68.60 2.03 48.20 16 9 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 12 C 0.50 20.66 6.87 87.66 0.60 21.26 16 13 O -0.60 -31.77 15.64 -3.04 -0.05 -31.82 16 14 C -0.09 -2.45 1.70 -11.54 -0.02 -2.47 16 15 H 0.13 2.44 7.55 -2.39 -0.02 2.43 16 16 C -0.11 -2.60 4.91 30.59 0.15 -2.45 16 17 C -0.11 -2.11 5.49 30.59 0.17 -1.94 16 18 C 0.16 3.04 2.45 44.99 0.11 3.15 16 19 H 0.06 1.61 7.58 -2.39 -0.02 1.60 16 20 N -0.69 -11.05 5.08 -570.12 -2.90 -13.95 16 21 C 0.64 13.95 8.02 129.79 1.04 14.99 16 22 O -0.60 -16.82 11.54 19.77 0.23 -16.59 16 23 O -0.37 -6.85 9.94 -55.43 -0.55 -7.40 16 24 C 0.13 1.96 1.13 -10.79 -0.01 1.95 16 25 C -0.18 -2.97 8.37 71.98 0.60 -2.36 16 26 C -0.13 -1.21 8.85 71.98 0.64 -0.57 16 27 C -0.18 -2.91 8.37 71.98 0.60 -2.30 16 28 C -0.11 -1.64 5.39 30.58 0.16 -1.47 16 29 C -0.09 -2.31 4.63 30.58 0.14 -2.17 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 32 H 0.10 2.22 4.35 -2.39 -0.01 2.21 16 33 H 0.02 1.35 8.07 -2.39 -0.02 1.33 16 34 H 0.00 -0.26 7.49 -2.39 -0.02 -0.28 16 35 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.08 1.98 5.68 -2.39 -0.01 1.97 16 37 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.42 4.10 8.71 -92.71 -0.81 3.29 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.06 1.36 5.88 -2.39 -0.01 1.34 16 44 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.06 1.36 5.88 -2.39 -0.01 1.34 16 48 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 51 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 52 H 0.05 1.45 7.92 -2.39 -0.02 1.43 16 53 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -82.04 412.57 3.29 -78.75 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.08 Total: 15.39 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 6.59 Total: 12.71 kcal Atomic # 7 Polarization: -94.20 SS G_CDS: -5.04 Total: -99.24 kcal Atomic # 8 Polarization: -55.44 SS G_CDS: -0.37 Total: -55.81 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -82.04 3.29 -78.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864994959.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.479 kcal (2) G-P(sol) polarization free energy of solvation -82.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds