Wall clock time and date at job start Sat Apr 11 2020 06:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 116.99462 * 2 1 4 4 O 1.20826 * 120.00326 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99878 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47314 * 179.97438 * 5 3 2 7 7 N 1.46501 * 109.46805 * 180.02562 * 6 5 3 8 8 C 1.37102 * 119.99958 * 263.24387 * 7 6 5 9 9 H 1.07993 * 119.99785 * 188.08383 * 8 7 6 10 10 C 1.38953 * 119.99666 * 8.08503 * 8 7 6 11 11 N 1.31409 * 120.00338 * 26.13176 * 10 8 7 12 12 Si 1.86807 * 119.99594 * 206.13185 * 10 8 7 13 13 H 1.48504 * 109.46826 * 84.98733 * 12 10 8 14 14 H 1.48492 * 109.46859 * 204.98535 * 12 10 8 15 15 H 1.48500 * 109.47183 * 324.98697 * 12 10 8 16 16 C 1.34774 * 120.00266 * 83.25180 * 7 6 5 17 17 O 1.21298 * 119.99727 * 359.97438 * 16 7 6 18 18 C 1.50699 * 120.00466 * 179.97438 * 16 7 6 19 19 C 1.52991 * 109.47250 * 179.97438 * 18 16 7 20 20 N 1.46905 * 109.47182 * 180.02562 * 19 18 16 21 21 C 1.46902 * 110.99741 * 293.95220 * 20 19 18 22 22 C 1.46898 * 111.00331 * 170.00031 * 20 19 18 23 23 C 1.52997 * 109.47363 * 69.99342 * 22 20 19 24 24 C 1.53001 * 109.47062 * 179.97438 * 23 22 20 25 25 C 1.52998 * 109.47262 * 300.00195 * 24 23 22 26 26 C 1.53004 * 109.46858 * 60.00208 * 25 24 23 27 27 C 1.52998 * 109.47102 * 190.00301 * 22 20 19 28 28 H 1.09001 * 109.47250 * 299.99889 * 1 2 3 29 29 H 1.08997 * 109.47202 * 60.00239 * 1 2 3 30 30 H 1.09008 * 109.46744 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47213 * 59.99498 * 5 3 2 32 32 H 1.09002 * 109.46971 * 300.00152 * 5 3 2 33 33 H 1.08995 * 109.46870 * 59.99965 * 6 5 3 34 34 H 1.08998 * 109.46799 * 299.99565 * 6 5 3 35 35 H 0.97003 * 119.99792 * 180.02562 * 11 10 8 36 36 H 1.09000 * 109.46917 * 59.99377 * 18 16 7 37 37 H 1.08999 * 109.46613 * 299.99532 * 18 16 7 38 38 H 1.09000 * 109.47620 * 59.99868 * 19 18 16 39 39 H 1.09008 * 109.47126 * 299.99461 * 19 18 16 40 40 H 1.09003 * 109.46750 * 296.04833 * 21 20 19 41 41 H 1.09000 * 109.46824 * 56.04378 * 21 20 19 42 42 H 1.08998 * 109.47213 * 176.04552 * 21 20 19 43 43 H 1.09008 * 109.47015 * 309.99757 * 22 20 19 44 44 H 1.09001 * 109.47424 * 300.00654 * 23 22 20 45 45 H 1.08999 * 109.46881 * 60.00366 * 23 22 20 46 46 H 1.09005 * 109.46920 * 180.02562 * 24 23 22 47 47 H 1.08999 * 109.46947 * 60.00439 * 24 23 22 48 48 H 1.08999 * 109.47338 * 300.00004 * 25 24 23 49 49 H 1.09003 * 109.46903 * 180.02562 * 25 24 23 50 50 H 1.09001 * 109.47040 * 179.97438 * 26 25 24 51 51 H 1.08999 * 109.47312 * 59.99781 * 26 25 24 52 52 H 1.08999 * 109.46769 * 299.99405 * 27 22 20 53 53 H 1.08991 * 109.47683 * 59.99625 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2751 -0.0006 6 6 4.0000 2.7423 -0.0011 7 7 5.4630 2.8189 -0.0023 8 6 6.1412 2.9944 1.1762 9 1 7.2047 3.1815 1.1645 10 6 5.4600 2.9316 2.3857 11 7 4.3522 2.2311 2.4804 12 14 6.1192 3.8429 3.8773 13 1 5.6460 5.2502 3.8464 14 1 5.6317 3.1837 5.1153 15 1 7.6039 3.8193 3.8555 16 6 6.1422 2.7171 -1.1619 17 8 5.5422 2.5615 -2.2045 18 6 7.6471 2.7965 -1.1632 19 6 8.1641 2.6530 -2.5960 20 7 9.6312 2.7298 -2.5972 21 6 10.0887 4.0659 -2.1927 22 6 10.1766 2.3619 -3.9106 23 6 9.8402 3.4549 -4.9269 24 6 10.4089 3.0719 -6.2947 25 6 11.9280 2.9214 -6.1916 26 6 12.2642 1.8282 -5.1752 27 6 11.6956 2.2107 -3.8078 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 3.9557 0.7811 -0.8908 32 1 3.9563 0.7807 0.8892 33 1 3.6106 3.2365 0.8889 34 1 3.6100 3.2361 -0.8911 35 1 3.8766 2.1876 3.3247 36 1 8.0539 1.9936 -0.5484 37 1 7.9605 3.7587 -0.7582 38 1 7.7574 3.4556 -3.2112 39 1 7.8508 1.6905 -3.0006 40 1 9.7580 4.8007 -2.9268 41 1 9.6703 4.3133 -1.2171 42 1 11.1771 4.0750 -2.1342 43 1 9.7386 1.4176 -4.2343 44 1 8.7580 3.5625 -5.0001 45 1 10.2782 4.3991 -4.6033 46 1 10.1696 3.8509 -7.0187 47 1 9.9713 2.1276 -6.6186 48 1 12.3655 3.8657 -5.8677 49 1 12.3331 2.6490 -7.1662 50 1 13.3464 1.7207 -5.1020 51 1 11.8267 0.8839 -5.4991 52 1 12.1336 3.1550 -3.4842 53 1 11.9352 1.4320 -3.0839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871343397.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:21 Heat of formation + Delta-G solvation = -139.842093 kcal Electronic energy + Delta-G solvation = -30819.750810 eV Core-core repulsion = 26690.724543 eV Total energy + Delta-G solvation = -4129.026267 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.50107 -40.76101 -40.12965 -37.66135 -37.10555 -36.62036 -33.55192 -33.09106 -31.88709 -31.59012 -29.63274 -28.70642 -27.38320 -26.81277 -25.29862 -23.81092 -23.09351 -21.82720 -21.45326 -20.89221 -20.23161 -19.00353 -18.43272 -17.91329 -17.49239 -17.39529 -16.90442 -16.48995 -16.26017 -16.05296 -15.74447 -15.36454 -15.14890 -15.11337 -14.93757 -14.70568 -14.37972 -14.22579 -13.80910 -13.74257 -13.55333 -13.29572 -13.19007 -13.15486 -13.01691 -12.93414 -12.79285 -12.62285 -12.43226 -12.23497 -12.08291 -11.98251 -11.95256 -11.82499 -11.75375 -11.70302 -11.51755 -11.36485 -11.14458 -10.96278 -10.91533 -10.33933 -9.83777 -9.14783 -8.35235 -5.82600 1.23483 1.43611 1.53324 1.61797 1.75250 2.07404 2.31230 2.75344 3.09575 3.26578 3.77108 3.87148 4.00529 4.04042 4.12092 4.19335 4.23293 4.28702 4.30953 4.31775 4.37747 4.45869 4.48584 4.52174 4.54610 4.60017 4.65040 4.67635 4.71612 4.73394 4.75789 4.81031 4.92710 5.09191 5.10309 5.12283 5.18899 5.21075 5.22674 5.26567 5.27491 5.28900 5.37824 5.38352 5.49185 5.56634 5.58447 5.76716 6.14101 6.23975 6.44188 6.77843 7.13032 7.57728 7.98995 8.67558 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011681 B = 0.002725 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.541228 B =10273.061911 C =12144.934887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.368 6.368 3 C 0.481 3.519 4 O -0.543 6.543 5 C -0.098 4.098 6 C 0.160 3.840 7 N -0.450 5.450 8 C -0.358 4.358 9 H 0.117 0.883 10 C 0.004 3.996 11 N -0.879 5.879 12 Si 0.982 3.018 13 H -0.282 1.282 14 H -0.286 1.286 15 H -0.256 1.256 16 C 0.442 3.558 17 O -0.640 6.640 18 C -0.100 4.100 19 C 0.090 3.910 20 N -0.540 5.540 21 C 0.015 3.985 22 C 0.084 3.916 23 C -0.150 4.150 24 C -0.113 4.113 25 C -0.116 4.116 26 C -0.115 4.115 27 C -0.103 4.103 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.136 0.864 31 H 0.079 0.921 32 H 0.126 0.874 33 H 0.088 0.912 34 H 0.028 0.972 35 H 0.272 0.728 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.023 0.977 39 H 0.059 0.941 40 H 0.029 0.971 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.041 0.959 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.058 0.942 48 H 0.063 0.937 49 H 0.072 0.928 50 H 0.076 0.924 51 H 0.060 0.940 52 H 0.067 0.933 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.572 -1.575 -8.400 13.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C 0.326 3.674 4 O -0.433 6.433 5 C -0.136 4.136 6 C 0.036 3.964 7 N -0.167 5.167 8 C -0.484 4.484 9 H 0.135 0.865 10 C -0.199 4.199 11 N -0.517 5.517 12 Si 0.806 3.194 13 H -0.208 1.208 14 H -0.212 1.212 15 H -0.180 1.180 16 C 0.233 3.767 17 O -0.529 6.529 18 C -0.140 4.140 19 C -0.038 4.038 20 N -0.263 5.263 21 C -0.133 4.133 22 C -0.024 4.024 23 C -0.189 4.189 24 C -0.152 4.152 25 C -0.153 4.153 26 C -0.153 4.153 27 C -0.141 4.141 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.154 0.846 31 H 0.098 0.902 32 H 0.144 0.856 33 H 0.106 0.894 34 H 0.047 0.953 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.042 0.958 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.060 0.940 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.077 0.923 48 H 0.082 0.918 49 H 0.091 0.909 50 H 0.095 0.905 51 H 0.079 0.921 52 H 0.085 0.915 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.080 -1.765 -8.360 13.214 hybrid contribution -1.025 1.019 0.347 1.487 sum 9.054 -0.746 -8.014 12.114 Atomic orbital electron populations 1.23549 0.74992 1.05729 1.02326 1.86515 1.25088 1.32832 1.84000 1.23886 0.92149 0.81059 0.70294 1.90561 1.67907 1.37341 1.47503 1.21571 0.86375 1.00798 1.04873 1.20752 0.81345 0.94172 1.00177 1.44013 1.04898 1.61167 1.06602 1.20042 0.95603 1.50065 0.82717 0.86527 1.25933 0.96586 0.96068 1.01349 1.70077 1.19236 1.34766 1.27611 0.85108 0.79365 0.78062 0.76862 1.20779 1.21187 1.17979 1.20853 0.91073 0.81773 0.83022 1.90505 1.71719 1.57797 1.32921 1.21227 0.90441 1.04094 0.98250 1.21540 0.86985 1.00382 0.94936 1.62216 1.07733 1.28142 1.28203 1.22555 1.01787 0.88569 1.00383 1.21791 0.96479 0.97584 0.86534 1.22182 0.99841 0.99951 0.96940 1.21464 0.96540 1.01436 0.95725 1.21529 0.94900 0.99260 0.99613 1.21510 1.01097 0.98626 0.94109 1.21509 0.92604 1.02143 0.97839 0.92278 0.92069 0.84557 0.90226 0.85629 0.89354 0.95321 0.91834 0.89045 0.89250 0.95842 0.92196 0.95298 0.91598 0.89637 0.91366 0.94016 0.91307 0.91741 0.92306 0.91812 0.90912 0.90490 0.92112 0.91475 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.56 113.37 1.20 1.91 16 2 O -0.37 -13.47 10.57 -51.43 -0.54 -14.02 16 3 C 0.48 20.97 7.96 71.24 0.57 21.53 16 4 O -0.54 -25.75 15.73 21.96 0.35 -25.40 16 5 C -0.10 -4.53 5.61 29.85 0.17 -4.36 16 6 C 0.16 8.10 3.81 86.38 0.33 8.43 16 7 N -0.45 -22.36 2.64 -635.54 -1.68 -24.04 16 8 C -0.36 -17.18 9.25 84.04 0.78 -16.40 16 9 H 0.12 5.19 6.47 -2.91 -0.02 5.17 16 10 C 0.00 0.18 4.88 84.93 0.41 0.59 16 11 N -0.88 -43.38 8.73 21.66 0.19 -43.19 16 12 Si 0.98 38.00 29.63 68.60 2.03 40.03 16 13 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 14 H -0.29 -11.08 7.11 99.48 0.71 -10.37 16 15 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 16 C 0.44 21.11 7.58 87.66 0.66 21.78 16 17 O -0.64 -33.74 15.68 -3.09 -0.05 -33.79 16 18 C -0.10 -3.82 4.01 29.84 0.12 -3.70 16 19 C 0.09 3.10 3.82 86.30 0.33 3.43 16 20 N -0.54 -15.00 4.71 -897.03 -4.23 -19.23 16 21 C 0.01 0.36 8.58 127.69 1.10 1.45 16 22 C 0.08 1.99 2.19 44.91 0.10 2.09 16 23 C -0.15 -3.36 4.45 30.59 0.14 -3.22 16 24 C -0.11 -2.04 5.92 30.59 0.18 -1.86 16 25 C -0.12 -1.68 5.92 30.59 0.18 -1.50 16 26 C -0.12 -1.73 5.92 30.58 0.18 -1.55 16 27 C -0.10 -1.92 5.12 30.58 0.16 -1.77 16 28 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 29 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 30 H 0.14 2.44 8.14 -2.38 -0.02 2.42 16 31 H 0.08 3.69 8.14 -2.38 -0.02 3.67 16 32 H 0.13 6.10 6.42 -2.39 -0.02 6.08 16 33 H 0.09 4.77 5.78 -2.39 -0.01 4.76 16 34 H 0.03 1.52 7.59 -2.39 -0.02 1.51 16 35 H 0.27 12.90 8.31 -92.71 -0.77 12.13 16 36 H 0.09 3.47 8.01 -2.39 -0.02 3.45 16 37 H 0.09 3.21 6.13 -2.39 -0.01 3.20 16 38 H 0.02 0.87 7.02 -2.39 -0.02 0.85 16 39 H 0.06 2.23 7.89 -2.38 -0.02 2.21 16 40 H 0.03 0.69 6.21 -2.39 -0.01 0.68 16 41 H 0.07 1.67 6.30 -2.39 -0.02 1.66 16 42 H 0.09 1.71 6.47 -2.39 -0.02 1.70 16 43 H 0.07 1.76 7.93 -2.38 -0.02 1.74 16 44 H 0.04 1.12 6.91 -2.39 -0.02 1.10 16 45 H 0.07 1.48 6.33 -2.39 -0.02 1.47 16 46 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 47 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 50 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.07 1.18 6.55 -2.39 -0.02 1.17 16 53 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -60.64 404.44 3.56 -57.08 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: 0.89 Total: 35.69 kcal Atomic # 6 Polarization: 20.27 SS G_CDS: 6.60 Total: 26.87 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -5.72 Total: -86.46 kcal Atomic # 8 Polarization: -72.96 SS G_CDS: -0.25 Total: -73.21 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Total: -60.64 3.56 -57.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871343397.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.759 kcal (2) G-P(sol) polarization free energy of solvation -60.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds