Wall clock time and date at job start Sat Apr 11 2020 06:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45206 * 109.47091 * 2 1 4 4 C 1.34228 * 117.00001 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00094 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99603 * 180.02562 * 4 3 2 7 7 H 1.08994 * 109.47301 * 60.00009 * 6 4 3 8 8 C 1.53001 * 109.46880 * 299.99284 * 6 4 3 9 9 C 1.53001 * 109.46592 * 180.02562 * 6 4 3 10 10 C 1.53948 * 113.74199 * 278.73593 * 9 6 4 11 11 N 1.47808 * 86.03709 * 222.08617 * 10 9 6 12 12 C 1.34783 * 134.45378 * 204.64408 * 11 10 9 13 13 O 1.21585 * 119.99834 * 179.86958 * 12 11 10 14 14 N 1.34772 * 120.00195 * 359.86614 * 12 11 10 15 15 C 1.46497 * 120.00072 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47115 * 180.02562 * 15 14 12 17 17 C 1.53003 * 109.46886 * 299.99601 * 16 15 14 18 18 C 1.53000 * 109.47481 * 59.99625 * 16 15 14 19 19 C 1.53009 * 109.47178 * 180.02562 * 16 15 14 20 20 C 1.50695 * 109.46991 * 179.97438 * 19 16 15 21 21 H 1.07993 * 120.00213 * 359.97438 * 20 19 16 22 22 C 1.37885 * 119.99703 * 179.97438 * 20 19 16 23 23 N 1.31513 * 119.99949 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 119.99890 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47168 * 90.00160 * 24 22 20 26 26 H 1.48501 * 109.47020 * 210.00371 * 24 22 20 27 27 H 1.48506 * 109.47296 * 330.00061 * 24 22 20 28 28 C 1.47582 * 91.05356 * 24.55074 * 11 10 9 29 29 H 1.08992 * 109.47056 * 300.00206 * 1 2 3 30 30 H 1.09004 * 109.47006 * 60.00090 * 1 2 3 31 31 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47142 * 239.99963 * 2 1 3 33 33 H 1.09004 * 109.47006 * 119.99910 * 2 1 3 34 34 H 1.08994 * 109.47746 * 300.00453 * 8 6 4 35 35 H 1.09001 * 109.46635 * 60.01149 * 8 6 4 36 36 H 1.09007 * 109.46672 * 180.02562 * 8 6 4 37 37 H 1.09000 * 112.94653 * 50.32963 * 9 6 4 38 38 H 1.08997 * 113.76998 * 336.35270 * 10 9 6 39 39 H 1.08999 * 113.76913 * 107.74792 * 10 9 6 40 40 H 0.97003 * 119.99897 * 0.02562 * 14 12 11 41 41 H 1.09005 * 109.46835 * 299.99837 * 15 14 12 42 42 H 1.08996 * 109.47509 * 59.99889 * 15 14 12 43 43 H 1.08991 * 109.46868 * 60.00209 * 17 16 15 44 44 H 1.09005 * 109.46671 * 180.02562 * 17 16 15 45 45 H 1.08996 * 109.46992 * 300.00008 * 17 16 15 46 46 H 1.09006 * 109.46680 * 60.00053 * 18 16 15 47 47 H 1.08997 * 109.47395 * 179.97438 * 18 16 15 48 48 H 1.08991 * 109.47221 * 300.00372 * 18 16 15 49 49 H 1.09003 * 109.46223 * 299.99695 * 19 16 15 50 50 H 1.08997 * 109.47118 * 59.99225 * 19 16 15 51 51 H 0.97001 * 119.99908 * 179.97438 * 23 22 20 52 52 H 1.08999 * 113.76442 * 221.15586 * 28 11 10 53 53 H 1.08998 * 113.86860 * 89.76528 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9206 2.9375 0.0012 7 1 3.5844 3.4694 0.8911 8 6 3.4496 3.6847 -1.2482 9 6 5.4486 2.8574 0.0010 10 6 6.0564 2.6106 1.3937 11 7 7.0710 3.6170 1.0164 12 6 8.3379 3.8701 1.4005 13 8 8.9517 4.7932 0.9010 14 7 8.9243 3.1002 2.3384 15 6 10.3011 3.3757 2.7563 16 6 10.7227 2.3629 3.8228 17 6 9.7906 2.4767 5.0308 18 6 10.6384 0.9487 3.2450 19 6 12.1605 2.6511 4.2598 20 6 12.5755 1.6539 5.3107 21 1 11.8830 0.8913 5.6349 22 6 13.8394 1.7153 5.8584 23 7 14.2014 0.8455 6.7759 24 14 15.0374 3.0340 5.2971 25 1 14.8800 4.2406 6.1484 26 1 16.4268 2.5230 5.4147 27 1 14.7579 3.3868 3.8819 28 6 6.1412 4.2315 0.0489 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7859 3.1529 -2.1381 35 1 2.3611 3.7418 -1.2485 36 1 3.8666 4.6919 -1.2479 37 1 5.8393 2.1957 -0.7719 38 1 5.4124 2.9229 2.2158 39 1 6.4596 1.6065 1.5254 40 1 8.4348 2.3635 2.7367 41 1 10.9652 3.2942 1.8957 42 1 10.3613 4.3833 3.1676 43 1 8.7663 2.2717 4.7199 44 1 10.0913 1.7555 5.7908 45 1 9.8507 3.4842 5.4425 46 1 11.3025 0.8678 2.3844 47 1 10.9392 0.2273 4.0047 48 1 9.6141 0.7438 2.9341 49 1 12.8247 2.5703 3.3993 50 1 12.2201 3.6585 4.6715 51 1 15.0907 0.8884 7.1609 52 1 6.6121 4.5190 -0.8911 53 1 5.5215 5.0213 0.4734 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875582860.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:31 Heat of formation + Delta-G solvation = -100.751857 kcal Electronic energy + Delta-G solvation = -30040.114822 eV Core-core repulsion = 25912.783635 eV Total energy + Delta-G solvation = -4127.331187 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.29474 -40.29150 -38.64836 -37.15693 -36.81688 -34.19034 -33.50449 -32.12087 -31.97288 -29.09080 -27.72173 -26.91446 -26.52436 -25.66749 -25.32390 -23.68870 -22.51860 -21.84053 -20.35944 -19.71625 -18.54082 -18.07517 -17.47998 -17.21939 -16.92867 -16.79386 -16.12772 -15.78586 -14.98987 -14.72687 -14.50099 -14.15113 -13.98915 -13.92486 -13.66417 -13.50764 -13.35354 -13.19420 -12.99300 -12.76608 -12.68453 -12.65457 -12.40056 -12.25826 -12.19091 -12.07612 -11.95821 -11.46035 -11.21586 -11.15643 -11.08883 -10.98525 -10.98095 -10.68188 -10.58893 -10.44628 -10.02478 -9.93860 -9.72160 -9.48234 -8.99114 -8.96734 -8.51683 -8.49567 -6.02126 -3.99176 1.79195 2.14960 2.47499 3.33643 3.33824 3.41517 3.46332 3.78209 3.98591 4.13969 4.20850 4.44106 4.47953 4.48986 4.61097 4.67451 4.75549 4.78655 4.97015 5.06295 5.15314 5.22572 5.24144 5.27595 5.28442 5.30700 5.36211 5.41904 5.47699 5.55892 5.58025 5.63335 5.67939 5.84828 6.03238 6.15859 6.17044 6.22650 6.36772 6.54813 6.62828 6.77757 6.95509 7.04369 7.07865 7.22960 7.24479 7.33103 7.40014 7.80422 8.12573 8.55113 8.75533 9.02010 9.60633 11.10572 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019557 B = 0.001968 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.373058 B =14226.772639 C =15330.632295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.358 6.358 4 C 0.465 3.535 5 O -0.500 6.500 6 C -0.074 4.074 7 H 0.115 0.885 8 C -0.145 4.145 9 C -0.108 4.108 10 C 0.107 3.893 11 N -0.667 5.667 12 C 0.726 3.274 13 O -0.593 6.593 14 N -0.733 5.733 15 C 0.145 3.855 16 C -0.063 4.063 17 C -0.127 4.127 18 C -0.128 4.128 19 C -0.002 4.002 20 C -0.510 4.510 21 H 0.078 0.922 22 C 0.066 3.934 23 N -0.904 5.904 24 Si 0.875 3.125 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.265 1.265 28 C 0.138 3.862 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.395 0.605 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.029 0.971 44 H 0.072 0.928 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.072 0.928 48 H 0.030 0.970 49 H 0.019 0.981 50 H 0.014 0.986 51 H 0.262 0.738 52 H 0.085 0.915 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.184 2.207 -15.684 34.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.275 6.275 4 C 0.307 3.693 5 O -0.387 6.387 6 C -0.093 4.093 7 H 0.132 0.868 8 C -0.203 4.203 9 C -0.128 4.128 10 C -0.017 4.017 11 N -0.407 5.407 12 C 0.429 3.571 13 O -0.471 6.471 14 N -0.388 5.388 15 C 0.021 3.979 16 C -0.064 4.064 17 C -0.185 4.185 18 C -0.185 4.185 19 C -0.039 4.039 20 C -0.548 4.548 21 H 0.096 0.904 22 C -0.135 4.135 23 N -0.543 5.543 24 Si 0.703 3.297 25 H -0.204 1.204 26 H -0.215 1.215 27 H -0.190 1.190 28 C 0.015 3.985 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.132 0.868 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.230 0.770 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.048 0.952 44 H 0.091 0.909 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.091 0.909 48 H 0.049 0.951 49 H 0.037 0.963 50 H 0.032 0.968 51 H 0.072 0.928 52 H 0.103 0.897 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -29.108 2.563 -15.855 33.245 hybrid contribution 0.542 0.066 0.145 0.565 sum -28.566 2.629 -15.710 32.706 Atomic orbital electron populations 1.21812 0.92527 1.03107 1.03546 1.23057 0.95425 0.80047 1.02775 1.86496 1.24523 1.32551 1.83959 1.23685 0.80623 0.92595 0.72377 1.90705 1.60347 1.43020 1.44623 1.21080 0.94914 0.90381 1.02974 0.86754 1.21777 1.02404 1.00693 0.95402 1.23134 0.91428 0.98727 0.99471 1.23251 0.88358 0.93799 0.96265 1.49007 1.10593 1.35834 1.45315 1.15468 0.79607 0.82120 0.79907 1.90912 1.63355 1.33086 1.59756 1.45273 1.16501 1.34820 1.42173 1.21512 0.79587 0.99210 0.97559 1.20706 0.98413 0.93959 0.93292 1.21763 0.96138 1.02233 0.98337 1.21759 0.98671 0.96969 1.01084 1.19589 0.90251 0.97177 0.96926 1.21082 0.99271 1.14345 1.20109 0.90406 1.25003 0.98129 0.95661 0.94703 1.69904 1.20074 1.36303 1.28044 0.86851 0.80526 0.82379 0.79976 1.20395 1.21523 1.18951 1.22961 0.87874 0.94655 0.93032 0.91401 0.91474 0.90156 0.91177 0.91062 0.91771 0.90945 0.90482 0.86824 0.89972 0.89676 0.77024 0.92025 0.92022 0.95157 0.90903 0.93411 0.93386 0.90904 0.95116 0.96311 0.96769 0.92826 0.89707 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 10.29 37.16 0.38 -0.16 16 2 C 0.06 0.35 6.19 37.16 0.23 0.58 16 3 O -0.36 -2.55 10.12 -39.25 -0.40 -2.95 16 4 C 0.46 3.63 7.24 36.01 0.26 3.89 16 5 O -0.50 -5.40 15.59 -18.75 -0.29 -5.69 16 6 C -0.07 -0.39 2.56 -91.77 -0.24 -0.62 16 7 H 0.11 0.43 7.98 -51.93 -0.41 0.01 16 8 C -0.15 -0.55 8.95 37.16 0.33 -0.22 16 9 C -0.11 -0.77 2.68 -89.69 -0.24 -1.01 16 10 C 0.11 0.93 7.93 -2.84 -0.02 0.90 16 11 N -0.67 -7.99 3.61 -183.91 -0.66 -8.65 16 12 C 0.73 11.88 8.76 -86.92 -0.76 11.12 16 13 O -0.59 -12.09 17.07 5.29 0.09 -12.00 16 14 N -0.73 -11.40 4.96 -65.23 -0.32 -11.72 16 15 C 0.14 2.59 4.56 -4.04 -0.02 2.57 16 16 C -0.06 -1.20 0.54 -154.50 -0.08 -1.28 16 17 C -0.13 -2.28 8.05 37.16 0.30 -1.98 16 18 C -0.13 -2.31 8.05 37.16 0.30 -2.01 16 19 C 0.00 -0.04 3.11 -27.88 -0.09 -0.12 16 20 C -0.51 -13.85 8.20 -34.44 -0.28 -14.13 16 21 H 0.08 2.23 5.92 -52.49 -0.31 1.92 16 22 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 23 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 24 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 28 C 0.14 1.15 7.54 -2.96 -0.02 1.13 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 33 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.25 8.11 -51.93 -0.42 -0.18 16 36 H 0.08 0.21 7.51 -51.93 -0.39 -0.18 16 37 H 0.11 0.94 7.91 -51.93 -0.41 0.53 16 38 H 0.08 0.58 7.99 -51.93 -0.41 0.16 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.39 5.40 5.77 -40.82 -0.24 5.16 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 44 H 0.07 1.45 6.61 -51.93 -0.34 1.11 16 45 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 48 H 0.03 0.46 6.86 -51.93 -0.36 0.11 16 49 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 50 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 51 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 52 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 53 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 LS Contribution 420.68 15.07 6.34 6.34 Total: -1.00 -35.04 420.68 -8.61 -43.65 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -9.42 Total: 0.15 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -0.05 Total: 0.43 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -0.21 Total: -47.07 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.60 Total: -20.64 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -35.04 -8.61 -43.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875582860.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.102 kcal (2) G-P(sol) polarization free energy of solvation -35.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds