Wall clock time and date at job start Sat Apr 11 2020 06:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45206 * 109.47091 * 2 1 4 4 C 1.34228 * 117.00001 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00094 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99603 * 180.02562 * 4 3 2 7 7 H 1.08994 * 109.47301 * 60.00009 * 6 4 3 8 8 C 1.53001 * 109.46880 * 299.99284 * 6 4 3 9 9 C 1.53001 * 109.46592 * 180.02562 * 6 4 3 10 10 C 1.53948 * 113.74199 * 278.73593 * 9 6 4 11 11 N 1.47808 * 86.03709 * 222.08617 * 10 9 6 12 12 C 1.34783 * 134.45378 * 204.64408 * 11 10 9 13 13 O 1.21585 * 119.99834 * 179.86958 * 12 11 10 14 14 N 1.34772 * 120.00195 * 359.86614 * 12 11 10 15 15 C 1.46497 * 120.00072 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47115 * 180.02562 * 15 14 12 17 17 C 1.53003 * 109.46886 * 299.99601 * 16 15 14 18 18 C 1.53000 * 109.47481 * 59.99625 * 16 15 14 19 19 C 1.53009 * 109.47178 * 180.02562 * 16 15 14 20 20 C 1.50695 * 109.46991 * 179.97438 * 19 16 15 21 21 H 1.07993 * 120.00213 * 359.97438 * 20 19 16 22 22 C 1.37885 * 119.99703 * 179.97438 * 20 19 16 23 23 N 1.31513 * 119.99949 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 119.99890 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47168 * 90.00160 * 24 22 20 26 26 H 1.48501 * 109.47020 * 210.00371 * 24 22 20 27 27 H 1.48506 * 109.47296 * 330.00061 * 24 22 20 28 28 C 1.47582 * 91.05356 * 24.55074 * 11 10 9 29 29 H 1.08992 * 109.47056 * 300.00206 * 1 2 3 30 30 H 1.09004 * 109.47006 * 60.00090 * 1 2 3 31 31 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47142 * 239.99963 * 2 1 3 33 33 H 1.09004 * 109.47006 * 119.99910 * 2 1 3 34 34 H 1.08994 * 109.47746 * 300.00453 * 8 6 4 35 35 H 1.09001 * 109.46635 * 60.01149 * 8 6 4 36 36 H 1.09007 * 109.46672 * 180.02562 * 8 6 4 37 37 H 1.09000 * 112.94653 * 50.32963 * 9 6 4 38 38 H 1.08997 * 113.76998 * 336.35270 * 10 9 6 39 39 H 1.08999 * 113.76913 * 107.74792 * 10 9 6 40 40 H 0.97003 * 119.99897 * 0.02562 * 14 12 11 41 41 H 1.09005 * 109.46835 * 299.99837 * 15 14 12 42 42 H 1.08996 * 109.47509 * 59.99889 * 15 14 12 43 43 H 1.08991 * 109.46868 * 60.00209 * 17 16 15 44 44 H 1.09005 * 109.46671 * 180.02562 * 17 16 15 45 45 H 1.08996 * 109.46992 * 300.00008 * 17 16 15 46 46 H 1.09006 * 109.46680 * 60.00053 * 18 16 15 47 47 H 1.08997 * 109.47395 * 179.97438 * 18 16 15 48 48 H 1.08991 * 109.47221 * 300.00372 * 18 16 15 49 49 H 1.09003 * 109.46223 * 299.99695 * 19 16 15 50 50 H 1.08997 * 109.47118 * 59.99225 * 19 16 15 51 51 H 0.97001 * 119.99908 * 179.97438 * 23 22 20 52 52 H 1.08999 * 113.76442 * 221.15586 * 28 11 10 53 53 H 1.08998 * 113.86860 * 89.76528 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9206 2.9375 0.0012 7 1 3.5844 3.4694 0.8911 8 6 3.4496 3.6847 -1.2482 9 6 5.4486 2.8574 0.0010 10 6 6.0564 2.6106 1.3937 11 7 7.0710 3.6170 1.0164 12 6 8.3379 3.8701 1.4005 13 8 8.9517 4.7932 0.9010 14 7 8.9243 3.1002 2.3384 15 6 10.3011 3.3757 2.7563 16 6 10.7227 2.3629 3.8228 17 6 9.7906 2.4767 5.0308 18 6 10.6384 0.9487 3.2450 19 6 12.1605 2.6511 4.2598 20 6 12.5755 1.6539 5.3107 21 1 11.8830 0.8913 5.6349 22 6 13.8394 1.7153 5.8584 23 7 14.2014 0.8455 6.7759 24 14 15.0374 3.0340 5.2971 25 1 14.8800 4.2406 6.1484 26 1 16.4268 2.5230 5.4147 27 1 14.7579 3.3868 3.8819 28 6 6.1412 4.2315 0.0489 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7859 3.1529 -2.1381 35 1 2.3611 3.7418 -1.2485 36 1 3.8666 4.6919 -1.2479 37 1 5.8393 2.1957 -0.7719 38 1 5.4124 2.9229 2.2158 39 1 6.4596 1.6065 1.5254 40 1 8.4348 2.3635 2.7367 41 1 10.9652 3.2942 1.8957 42 1 10.3613 4.3833 3.1676 43 1 8.7663 2.2717 4.7199 44 1 10.0913 1.7555 5.7908 45 1 9.8507 3.4842 5.4425 46 1 11.3025 0.8678 2.3844 47 1 10.9392 0.2273 4.0047 48 1 9.6141 0.7438 2.9341 49 1 12.8247 2.5703 3.3993 50 1 12.2201 3.6585 4.6715 51 1 15.0907 0.8884 7.1609 52 1 6.6121 4.5190 -0.8911 53 1 5.5215 5.0213 0.4734 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875582860.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:30 Heat of formation + Delta-G solvation = -122.357638 kcal Electronic energy + Delta-G solvation = -30041.051719 eV Core-core repulsion = 25912.783635 eV Total energy + Delta-G solvation = -4128.268084 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.97565 -41.19758 -39.74759 -38.48001 -37.57532 -35.20761 -34.75000 -33.92069 -32.43823 -30.19682 -29.42974 -28.02402 -27.73140 -26.88471 -25.81819 -24.54048 -23.91021 -22.68648 -21.16976 -20.62884 -19.85073 -18.93684 -18.70534 -18.62607 -17.80110 -17.52624 -17.30421 -16.70649 -16.28720 -15.79781 -15.63682 -15.46170 -15.21507 -15.06869 -14.66667 -14.49310 -14.22034 -14.19304 -14.06060 -13.90841 -13.71508 -13.46573 -13.21304 -13.14230 -12.93987 -12.87247 -12.84582 -12.63342 -12.58263 -12.46861 -12.32408 -12.18266 -11.95240 -11.80181 -11.77847 -11.54227 -11.47809 -11.34356 -11.26307 -11.09853 -10.92556 -10.71003 -10.23880 -9.52582 -8.22940 -6.23085 1.21372 1.35549 1.38215 1.43978 1.48775 1.70417 2.13485 2.38739 2.87604 3.12250 3.26572 3.60291 3.69317 3.88655 4.00264 4.03757 4.03892 4.11477 4.13360 4.21452 4.30040 4.39734 4.43383 4.46550 4.55427 4.58258 4.63218 4.69191 4.75160 4.82029 4.85352 4.91780 4.95348 4.95986 5.00170 5.03047 5.06318 5.19079 5.25380 5.27190 5.34448 5.36823 5.38379 5.48168 5.53325 5.55069 5.66426 5.74853 6.19907 6.37334 6.75947 6.83211 6.98649 7.39460 7.55148 8.92533 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019557 B = 0.001968 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.373058 B =14226.772639 C =15330.632295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.358 6.358 4 C 0.465 3.535 5 O -0.537 6.537 6 C -0.065 4.065 7 H 0.141 0.859 8 C -0.143 4.143 9 C -0.093 4.093 10 C 0.103 3.897 11 N -0.671 5.671 12 C 0.720 3.280 13 O -0.640 6.640 14 N -0.726 5.726 15 C 0.159 3.841 16 C -0.058 4.058 17 C -0.121 4.121 18 C -0.122 4.122 19 C -0.002 4.002 20 C -0.502 4.502 21 H 0.052 0.948 22 C 0.005 3.995 23 N -0.950 5.950 24 Si 0.935 3.065 25 H -0.271 1.271 26 H -0.288 1.288 27 H -0.253 1.253 28 C 0.136 3.864 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.405 0.595 41 H 0.050 0.950 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.047 0.953 45 H 0.046 0.954 46 H 0.043 0.957 47 H 0.047 0.953 48 H 0.062 0.938 49 H 0.014 0.986 50 H 0.015 0.985 51 H 0.263 0.737 52 H 0.080 0.920 53 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.820 3.598 -16.841 37.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.309 3.691 5 O -0.426 6.426 6 C -0.084 4.084 7 H 0.158 0.842 8 C -0.200 4.200 9 C -0.113 4.113 10 C -0.019 4.019 11 N -0.410 5.410 12 C 0.423 3.577 13 O -0.522 6.522 14 N -0.381 5.381 15 C 0.034 3.966 16 C -0.059 4.059 17 C -0.178 4.178 18 C -0.179 4.179 19 C -0.040 4.040 20 C -0.541 4.541 21 H 0.070 0.930 22 C -0.191 4.191 23 N -0.592 5.592 24 Si 0.760 3.240 25 H -0.196 1.196 26 H -0.214 1.214 27 H -0.177 1.177 28 C 0.014 3.986 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.126 0.874 39 H 0.097 0.903 40 H 0.242 0.758 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.066 0.934 48 H 0.081 0.919 49 H 0.033 0.967 50 H 0.033 0.967 51 H 0.072 0.928 52 H 0.098 0.902 53 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -31.830 3.939 -17.031 36.314 hybrid contribution 1.213 -0.457 0.478 1.382 sum -30.617 3.482 -16.552 34.978 Atomic orbital electron populations 1.21815 0.90661 1.04149 1.03791 1.23228 0.96915 0.79521 1.02337 1.86503 1.24183 1.33219 1.83584 1.24187 0.80588 0.93143 0.71189 1.90698 1.61063 1.44374 1.46451 1.21109 0.93106 0.89263 1.04953 0.84173 1.21798 1.02983 1.01084 0.94173 1.22900 0.92734 0.97562 0.98077 1.23545 0.87531 0.92791 0.98011 1.49154 1.09779 1.36716 1.45348 1.15639 0.80828 0.81584 0.79676 1.90873 1.65001 1.35020 1.61305 1.45019 1.15596 1.35187 1.42340 1.21137 0.80852 0.98155 0.96441 1.20570 0.96174 0.94839 0.94272 1.21676 0.97697 1.01400 0.97069 1.21677 1.00553 0.95656 1.00017 1.19553 0.93039 0.95920 0.95492 1.21352 0.98560 1.14012 1.20130 0.92966 1.25835 1.00264 0.97924 0.95068 1.70039 1.20695 1.38528 1.29895 0.85886 0.78178 0.79804 0.80153 1.19623 1.21390 1.17674 1.23261 0.87126 0.95850 0.92322 0.91188 0.91121 0.88759 0.91629 0.91591 0.92479 0.90152 0.88911 0.88275 0.87411 0.90315 0.75824 0.93178 0.92777 0.91768 0.93431 0.93493 0.93760 0.93374 0.91917 0.96719 0.96689 0.92841 0.90178 0.87033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 10.29 71.98 0.74 -0.05 16 2 C 0.05 0.57 6.19 71.98 0.45 1.01 16 3 O -0.36 -4.46 10.12 -51.40 -0.52 -4.98 16 4 C 0.46 6.41 7.24 71.24 0.52 6.92 16 5 O -0.54 -11.10 15.59 21.96 0.34 -10.76 16 6 C -0.06 -0.49 2.56 -11.54 -0.03 -0.52 16 7 H 0.14 0.41 7.98 -2.39 -0.02 0.40 16 8 C -0.14 -0.65 8.95 71.98 0.64 -0.01 16 9 C -0.09 -1.11 2.68 -10.13 -0.03 -1.14 16 10 C 0.10 1.51 7.93 86.44 0.69 2.20 16 11 N -0.67 -14.61 3.61 -854.03 -3.09 -17.70 16 12 C 0.72 22.55 8.76 179.05 1.57 24.12 16 13 O -0.64 -25.72 17.07 -3.98 -0.07 -25.79 16 14 N -0.73 -21.34 4.96 -478.55 -2.37 -23.71 16 15 C 0.16 5.52 4.56 86.38 0.39 5.91 16 16 C -0.06 -2.17 0.54 -52.18 -0.03 -2.19 16 17 C -0.12 -4.21 8.05 71.98 0.58 -3.63 16 18 C -0.12 -4.33 8.05 71.98 0.58 -3.75 16 19 C 0.00 -0.10 3.11 29.85 0.09 -0.01 16 20 C -0.50 -27.77 8.20 25.60 0.21 -27.56 16 21 H 0.05 3.10 5.92 -2.91 -0.02 3.08 16 22 C 0.01 0.31 5.47 84.66 0.46 0.78 16 23 N -0.95 -59.14 13.96 21.45 0.30 -58.84 16 24 Si 0.93 45.14 27.47 68.60 1.88 47.03 16 25 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 26 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 27 H -0.25 -11.61 6.54 99.48 0.65 -10.96 16 28 C 0.14 1.91 7.54 86.49 0.65 2.56 16 29 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.07 0.34 8.14 -2.38 -0.02 0.32 16 31 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.07 0.74 8.13 -2.39 -0.02 0.72 16 33 H 0.07 0.76 8.13 -2.38 -0.02 0.74 16 34 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.08 0.29 8.11 -2.39 -0.02 0.27 16 36 H 0.09 0.17 7.51 -2.38 -0.02 0.15 16 37 H 0.10 1.52 7.91 -2.39 -0.02 1.50 16 38 H 0.11 1.09 7.99 -2.39 -0.02 1.07 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.41 10.05 5.77 -92.71 -0.54 9.52 16 41 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 42 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.06 1.77 6.86 -2.39 -0.02 1.75 16 44 H 0.05 1.89 6.61 -2.38 -0.02 1.88 16 45 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 47 H 0.05 1.95 6.62 -2.39 -0.02 1.93 16 48 H 0.06 1.80 6.86 -2.39 -0.02 1.78 16 49 H 0.01 0.69 7.20 -2.39 -0.02 0.67 16 50 H 0.01 0.69 7.57 -2.39 -0.02 0.67 16 51 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 52 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 53 H 0.11 0.98 8.10 -2.39 -0.02 0.96 16 Total: -1.00 -77.93 420.68 4.26 -73.67 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.30 Total: 16.44 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 7.49 Total: 4.65 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -5.16 Total: -100.25 kcal Atomic # 8 Polarization: -41.28 SS G_CDS: -0.25 Total: -41.53 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.03 kcal Total: -77.93 4.26 -73.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875582860.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.687 kcal (2) G-P(sol) polarization free energy of solvation -77.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds