Wall clock time and date at job start Sat Apr 11 2020 06:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45204 * 109.47004 * 2 1 4 4 C 1.34233 * 116.99847 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99776 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99906 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.46959 * 299.99818 * 6 4 3 8 8 C 1.52997 * 109.47078 * 59.99730 * 6 4 3 9 9 C 1.53000 * 109.47083 * 179.97438 * 6 4 3 10 10 C 1.53954 * 113.74039 * 156.67226 * 9 6 4 11 11 N 1.47574 * 86.11744 * 222.05136 * 10 9 6 12 12 C 1.34775 * 134.49162 * 204.64327 * 11 10 9 13 13 O 1.21598 * 119.99982 * 179.97438 * 12 11 10 14 14 N 1.34770 * 120.00120 * 359.97438 * 12 11 10 15 15 C 1.46499 * 120.00310 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47345 * 180.02562 * 15 14 12 17 17 C 1.52994 * 109.47130 * 299.99792 * 16 15 14 18 18 C 1.52996 * 109.47011 * 60.00092 * 16 15 14 19 19 C 1.53000 * 109.47235 * 179.97438 * 16 15 14 20 20 C 1.50696 * 109.47454 * 179.97438 * 19 16 15 21 21 H 1.08001 * 119.99732 * 0.02562 * 20 19 16 22 22 C 1.37877 * 120.00262 * 180.02562 * 20 19 16 23 23 N 1.31506 * 119.99904 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99888 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47175 * 90.00167 * 24 22 20 26 26 H 1.48500 * 109.47060 * 210.00095 * 24 22 20 27 27 H 1.48504 * 109.47261 * 330.00221 * 24 22 20 28 28 C 1.47585 * 91.01633 * 24.64091 * 11 10 9 29 29 H 1.09002 * 109.46953 * 60.00228 * 1 2 3 30 30 H 1.09005 * 109.47031 * 179.97438 * 1 2 3 31 31 H 1.08989 * 109.47526 * 300.00073 * 1 2 3 32 32 H 1.08997 * 109.47813 * 239.99906 * 2 1 3 33 33 H 1.09002 * 109.46953 * 119.99772 * 2 1 3 34 34 H 1.08998 * 109.47533 * 179.97438 * 8 6 4 35 35 H 1.08996 * 109.47853 * 300.00179 * 8 6 4 36 36 H 1.09002 * 109.47153 * 60.00207 * 8 6 4 37 37 H 1.08999 * 112.94811 * 288.40930 * 9 6 4 38 38 H 1.08996 * 113.76731 * 336.35316 * 10 9 6 39 39 H 1.08993 * 113.76563 * 107.74431 * 10 9 6 40 40 H 0.97000 * 119.99860 * 0.02562 * 14 12 11 41 41 H 1.09004 * 109.46977 * 299.99625 * 15 14 12 42 42 H 1.09000 * 109.47306 * 59.99733 * 15 14 12 43 43 H 1.09000 * 109.46773 * 60.00031 * 17 16 15 44 44 H 1.09006 * 109.47289 * 179.97438 * 17 16 15 45 45 H 1.08995 * 109.47316 * 300.00213 * 17 16 15 46 46 H 1.09004 * 109.47650 * 60.00191 * 18 16 15 47 47 H 1.09004 * 109.47479 * 179.97438 * 18 16 15 48 48 H 1.09000 * 109.47132 * 300.00116 * 18 16 15 49 49 H 1.08996 * 109.47221 * 300.00385 * 19 16 15 50 50 H 1.09000 * 109.47089 * 59.99909 * 19 16 15 51 51 H 0.97007 * 120.00088 * 179.97438 * 23 22 20 52 52 H 1.09004 * 113.77038 * 221.05983 * 28 11 10 53 53 H 1.08999 * 113.77067 * 89.66191 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0012 7 1 3.5851 3.4698 -0.8888 8 6 3.4486 3.6840 1.2504 9 6 5.4486 2.8574 0.0023 10 6 6.1357 4.1173 -0.5550 11 7 7.0495 3.1896 -1.2495 12 6 8.3081 3.2811 -1.7226 13 8 8.8240 2.3241 -2.2671 14 7 8.9950 4.4333 -1.5922 15 6 10.3629 4.5329 -2.1070 16 6 10.9106 5.9348 -1.8318 17 6 10.0274 6.9729 -2.5269 18 6 10.9129 6.1945 -0.3241 19 6 12.3395 6.0387 -2.3689 20 6 12.8787 7.4196 -2.0985 21 1 12.2639 8.1500 -1.5936 22 6 14.1569 7.7506 -2.4955 23 7 14.9057 6.8610 -3.1098 24 14 14.8255 9.4622 -2.1596 25 1 15.4991 9.4796 -0.8363 26 1 15.8019 9.8285 -3.2169 27 1 13.7071 10.4392 -2.1586 28 6 6.0315 2.1215 -1.2178 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8655 4.6911 1.2511 35 1 2.3601 3.7411 1.2501 36 1 3.7842 3.1517 2.1404 37 1 5.8557 2.5185 0.9550 38 1 5.5063 4.6997 -1.2278 39 1 6.6227 4.7255 0.2071 40 1 8.5836 5.1966 -1.1575 41 1 10.9924 3.7937 -1.6115 42 1 10.3614 4.3474 -3.1811 43 1 9.0096 6.8987 -2.1438 44 1 10.4173 7.9717 -2.3305 45 1 10.0257 6.7878 -3.6010 46 1 11.5423 5.4550 0.1711 47 1 11.3035 7.1931 -0.1279 48 1 9.8951 6.1204 0.0589 49 1 12.9685 5.2991 -1.8735 50 1 12.3383 5.8534 -3.4431 51 1 15.8049 7.0940 -3.3896 52 1 6.4356 1.1363 -0.9848 53 1 5.3715 2.1177 -2.0852 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875582861.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:32 Heat of formation + Delta-G solvation = -125.054886 kcal Electronic energy + Delta-G solvation = -29922.236867 eV Core-core repulsion = 25793.851822 eV Total energy + Delta-G solvation = -4128.385045 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.02089 -41.18834 -39.71315 -38.44096 -37.56602 -35.23456 -34.76945 -33.86536 -32.44677 -30.08368 -28.93932 -27.94864 -27.44344 -27.14478 -25.80383 -24.84174 -23.96496 -22.76617 -21.18365 -20.70346 -19.86368 -18.79419 -18.64882 -18.34908 -17.80977 -17.50818 -17.18341 -16.71476 -16.45792 -15.87702 -15.69450 -15.37218 -15.01246 -14.97605 -14.58644 -14.50691 -14.30310 -14.08152 -13.92637 -13.82271 -13.69428 -13.44961 -13.22839 -13.03434 -12.87789 -12.84759 -12.70581 -12.57366 -12.51276 -12.47425 -12.32625 -12.21654 -12.02221 -11.95608 -11.86828 -11.53157 -11.49061 -11.33319 -11.18533 -10.95731 -10.84355 -10.50156 -10.25972 -9.53177 -8.12354 -6.20590 1.20987 1.42056 1.44801 1.44861 1.55263 1.68221 2.12119 2.45615 2.93293 3.22156 3.25926 3.61165 3.72816 3.95106 4.01024 4.02299 4.09210 4.10265 4.15503 4.23307 4.33174 4.38291 4.42218 4.49321 4.59185 4.60626 4.70394 4.73004 4.76266 4.85173 4.85824 4.94745 4.97537 4.99903 5.04671 5.11900 5.13667 5.18220 5.23761 5.39982 5.40587 5.49132 5.51229 5.53062 5.54637 5.59498 5.81503 5.90978 6.20711 6.31975 6.75550 6.94255 7.02946 7.47242 7.55576 9.00281 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.033540 B = 0.001734 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.627474 B =16147.364268 C =16664.343443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.358 6.358 4 C 0.461 3.539 5 O -0.537 6.537 6 C -0.065 4.065 7 H 0.141 0.859 8 C -0.140 4.140 9 C -0.091 4.091 10 C 0.114 3.886 11 N -0.671 5.671 12 C 0.717 3.283 13 O -0.648 6.648 14 N -0.718 5.718 15 C 0.161 3.839 16 C -0.064 4.064 17 C -0.119 4.119 18 C -0.119 4.119 19 C 0.040 3.960 20 C -0.513 4.513 21 H 0.075 0.925 22 C -0.007 4.007 23 N -0.940 5.940 24 Si 0.961 3.039 25 H -0.276 1.276 26 H -0.291 1.291 27 H -0.257 1.257 28 C 0.131 3.869 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.106 0.894 40 H 0.410 0.590 41 H 0.039 0.961 42 H 0.040 0.960 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.035 0.965 46 H 0.034 0.966 47 H 0.059 0.941 48 H 0.069 0.931 49 H -0.016 1.016 50 H -0.015 1.015 51 H 0.259 0.741 52 H 0.056 0.944 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.680 -4.866 11.007 36.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.020 4.020 3 O -0.274 6.274 4 C 0.305 3.695 5 O -0.427 6.427 6 C -0.085 4.085 7 H 0.158 0.842 8 C -0.197 4.197 9 C -0.110 4.110 10 C -0.007 4.007 11 N -0.411 5.411 12 C 0.420 3.580 13 O -0.531 6.531 14 N -0.374 5.374 15 C 0.036 3.964 16 C -0.065 4.065 17 C -0.176 4.176 18 C -0.176 4.176 19 C 0.002 3.998 20 C -0.551 4.551 21 H 0.093 0.907 22 C -0.203 4.203 23 N -0.581 5.581 24 Si 0.786 3.214 25 H -0.202 1.202 26 H -0.217 1.217 27 H -0.181 1.181 28 C 0.008 3.992 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.124 0.876 38 H 0.136 0.864 39 H 0.125 0.875 40 H 0.247 0.753 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.078 0.922 48 H 0.088 0.912 49 H 0.002 0.998 50 H 0.003 0.997 51 H 0.068 0.932 52 H 0.074 0.926 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -33.752 -5.859 10.470 35.821 hybrid contribution 1.281 0.047 -0.300 1.316 sum -32.472 -5.812 10.170 34.520 Atomic orbital electron populations 1.21811 0.90556 1.04154 1.03829 1.23220 0.96978 0.79581 1.02244 1.86503 1.24167 1.33157 1.83608 1.24319 0.80598 0.93330 0.71211 1.90710 1.61053 1.44495 1.46410 1.21155 0.93010 0.89094 1.05198 0.84189 1.21787 1.02873 1.01311 0.93757 1.22949 0.92889 0.96463 0.98707 1.23588 0.88819 0.93062 0.95258 1.49173 1.10452 1.19118 1.62333 1.15726 0.80696 0.83147 0.78456 1.90882 1.70508 1.39851 1.51871 1.44906 1.15429 1.13278 1.63781 1.21072 0.80754 0.97332 0.97194 1.20721 0.96182 0.92251 0.97300 1.21665 0.98118 0.98789 0.99004 1.21673 1.00859 1.01755 0.93347 1.18969 0.90833 0.96002 0.93975 1.21594 0.98720 0.98328 1.36459 0.90657 1.25979 0.97837 1.01148 0.95359 1.70135 1.09751 1.36455 1.41738 0.85504 0.78366 0.79992 0.77511 1.20197 1.21708 1.18116 1.23124 0.86223 0.92075 0.97748 0.91208 0.88761 0.91015 0.91816 0.91621 0.88312 0.90364 0.92545 0.87582 0.86401 0.87539 0.75275 0.94283 0.94130 0.91152 0.92297 0.94600 0.94695 0.92240 0.91177 0.99757 0.99683 0.93232 0.92560 0.89582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.29 71.98 0.74 -0.09 16 2 C 0.05 0.60 6.19 71.98 0.45 1.04 16 3 O -0.36 -4.68 10.12 -51.45 -0.52 -5.20 16 4 C 0.46 6.80 7.06 71.24 0.50 7.30 16 5 O -0.54 -11.93 14.66 21.96 0.32 -11.61 16 6 C -0.07 -0.50 2.60 -11.54 -0.03 -0.53 16 7 H 0.14 0.43 7.94 -2.39 -0.02 0.42 16 8 C -0.14 -0.52 9.12 71.98 0.66 0.14 16 9 C -0.09 -1.11 2.90 -10.13 -0.03 -1.14 16 10 C 0.11 1.21 8.00 86.48 0.69 1.91 16 11 N -0.67 -15.88 3.61 -854.67 -3.08 -18.96 16 12 C 0.72 24.37 8.76 179.06 1.57 25.93 16 13 O -0.65 -29.42 17.07 -4.02 -0.07 -29.49 16 14 N -0.72 -21.70 4.96 -478.53 -2.37 -24.07 16 15 C 0.16 6.17 4.56 86.38 0.39 6.57 16 16 C -0.06 -2.46 0.54 -52.18 -0.03 -2.49 16 17 C -0.12 -3.96 8.05 71.98 0.58 -3.38 16 18 C -0.12 -4.00 8.05 71.98 0.58 -3.42 16 19 C 0.04 2.06 4.04 29.85 0.12 2.18 16 20 C -0.51 -27.53 7.65 25.60 0.20 -27.34 16 21 H 0.08 3.74 5.68 -2.91 -0.02 3.72 16 22 C -0.01 -0.37 5.46 84.66 0.46 0.10 16 23 N -0.94 -57.70 13.29 21.45 0.28 -57.41 16 24 Si 0.96 43.53 29.54 68.60 2.03 45.56 16 25 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 26 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 27 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 28 C 0.13 2.77 6.92 86.48 0.60 3.37 16 29 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.09 0.27 8.14 -2.38 -0.02 0.25 16 31 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 33 H 0.07 0.78 8.13 -2.39 -0.02 0.76 16 34 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 35 H 0.08 0.24 8.11 -2.39 -0.02 0.23 16 36 H 0.06 0.31 8.14 -2.39 -0.02 0.30 16 37 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.12 0.61 7.96 -2.39 -0.02 0.59 16 39 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.41 9.33 5.77 -92.71 -0.54 8.79 16 41 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 42 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.07 1.74 6.86 -2.39 -0.02 1.73 16 44 H 0.06 2.08 6.62 -2.38 -0.02 2.06 16 45 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 47 H 0.06 2.10 6.62 -2.38 -0.02 2.08 16 48 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 49 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 50 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 51 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 52 H 0.06 1.54 8.06 -2.38 -0.02 1.52 16 53 H 0.09 1.61 8.10 -2.39 -0.02 1.59 16 Total: -1.00 -81.90 423.75 4.38 -77.52 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.35 Total: 13.52 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 7.45 Total: 10.14 kcal Atomic # 7 Polarization: -95.28 SS G_CDS: -5.17 Total: -100.45 kcal Atomic # 8 Polarization: -46.02 SS G_CDS: -0.27 Total: -46.29 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -81.90 4.38 -77.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875582861.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.533 kcal (2) G-P(sol) polarization free energy of solvation -81.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds