Wall clock time and date at job start Sat Apr 11 2020 06:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45201 * 109.46994 * 2 1 4 4 C 1.34226 * 116.99967 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99714 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00107 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.47010 * 59.99957 * 6 4 3 8 8 C 1.50703 * 109.47164 * 179.97438 * 6 4 3 9 9 O 1.21282 * 119.99487 * 84.83048 * 8 6 4 10 10 N 1.34773 * 120.00332 * 264.83316 * 8 6 4 11 11 C 1.46498 * 120.00069 * 185.51203 * 10 8 6 12 12 C 1.52998 * 109.47289 * 179.97438 * 11 10 8 13 13 H 1.09002 * 109.49683 * 55.05790 * 12 11 10 14 14 C 1.53037 * 109.50054 * 175.15647 * 12 11 10 15 15 C 1.53042 * 109.53711 * 181.31569 * 14 12 11 16 16 C 1.53188 * 109.31550 * 298.63530 * 15 14 12 17 17 N 1.46921 * 108.77445 * 54.63563 * 16 15 14 18 18 C 1.36940 * 120.63023 * 126.37359 * 17 16 15 19 19 H 1.08006 * 119.99805 * 207.08462 * 18 17 16 20 20 C 1.38811 * 120.00306 * 27.08362 * 18 17 16 21 21 N 1.31618 * 119.99317 * 28.43149 * 20 18 17 22 22 Si 1.86797 * 120.00308 * 208.43239 * 20 18 17 23 23 H 1.48496 * 109.47142 * 94.96415 * 22 20 18 24 24 H 1.48494 * 109.46850 * 214.96819 * 22 20 18 25 25 H 1.48506 * 109.46851 * 334.96685 * 22 20 18 26 26 C 1.46927 * 118.73923 * 306.39243 * 17 16 15 27 27 C 1.52994 * 109.47082 * 299.99850 * 6 4 3 28 28 C 1.53002 * 109.47112 * 66.26776 * 27 6 4 29 29 C 1.53002 * 109.47268 * 186.26341 * 27 6 4 30 30 H 1.09000 * 109.46815 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46797 * 299.99631 * 1 2 3 32 32 H 1.08995 * 109.47356 * 59.99793 * 1 2 3 33 33 H 1.09001 * 109.46797 * 240.00369 * 2 1 3 34 34 H 1.08995 * 109.47356 * 120.00207 * 2 1 3 35 35 H 0.97004 * 119.99631 * 5.50284 * 10 8 6 36 36 H 1.09010 * 109.46918 * 299.99233 * 11 10 8 37 37 H 1.08999 * 109.47509 * 59.99456 * 11 10 8 38 38 H 1.09005 * 109.46167 * 301.33461 * 14 12 11 39 39 H 1.09001 * 109.45762 * 61.29471 * 14 12 11 40 40 H 1.09003 * 109.49455 * 178.68676 * 15 14 12 41 41 H 1.09000 * 109.52624 * 58.60607 * 15 14 12 42 42 H 1.09005 * 109.58715 * 294.84785 * 16 15 14 43 43 H 1.08992 * 109.70608 * 174.49570 * 16 15 14 44 44 H 0.97006 * 119.99401 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.58629 * 293.81851 * 26 17 16 46 46 H 1.09002 * 109.58778 * 173.39930 * 26 17 16 47 47 H 1.09000 * 109.47364 * 306.26550 * 27 6 4 48 48 H 1.08998 * 109.47400 * 60.00160 * 28 27 6 49 49 H 1.09008 * 109.46895 * 180.02562 * 28 27 6 50 50 H 1.09004 * 109.46691 * 299.99499 * 28 27 6 51 51 H 1.09006 * 109.46868 * 61.67898 * 29 27 6 52 52 H 1.08994 * 109.47583 * 181.68116 * 29 27 6 53 53 H 1.09005 * 109.47319 * 301.68969 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.5851 3.4698 0.8888 8 6 5.4257 2.8586 -0.0010 9 8 6.0263 2.7318 -1.0471 10 7 6.1041 2.9288 1.1614 11 6 7.5684 2.9739 1.1533 12 6 8.0842 3.0514 2.5916 13 1 7.6792 2.2200 3.1686 14 6 9.6128 2.9768 2.5909 15 6 10.1280 3.0212 4.0312 16 6 9.7089 4.3448 4.6787 17 7 8.2524 4.4918 4.5541 18 6 7.4785 4.7324 5.6580 19 1 6.4452 4.4182 5.6719 20 6 8.0219 5.3800 6.7589 21 7 9.0119 6.2323 6.5984 22 14 7.3482 5.0419 8.4680 23 1 8.1684 3.9926 9.1248 24 1 7.3988 6.2872 9.2752 25 1 5.9417 4.5770 8.3626 26 6 7.6419 4.3753 3.2228 27 6 3.4487 3.6840 -1.2504 28 6 1.9362 3.9013 -1.1737 29 6 4.1550 5.0387 -1.3323 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 5.6228 2.9496 2.0033 36 1 7.9569 2.0743 0.6756 37 1 7.9019 3.8519 0.6002 38 1 9.9307 2.0465 2.1200 39 1 10.0173 3.8221 2.0342 40 1 11.2154 2.9446 4.0311 41 1 9.7048 2.1901 4.5954 42 1 10.2045 5.1727 4.1716 43 1 9.9872 4.3427 5.7325 44 1 9.3920 6.6846 7.3679 45 1 7.9688 5.2057 2.5970 46 1 6.5560 4.3909 3.3161 47 1 3.6869 3.0959 -2.1368 48 1 1.6980 4.4893 -0.2874 49 1 1.5999 4.4328 -2.0640 50 1 1.4330 2.9361 -1.1155 51 1 5.2306 4.8832 -1.4169 52 1 3.7967 5.5831 -2.2059 53 1 3.9411 5.6150 -0.4321 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878948804.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:04 Heat of formation + Delta-G solvation = -145.840501 kcal Electronic energy + Delta-G solvation = -31137.352308 eV Core-core repulsion = 27008.065930 eV Total energy + Delta-G solvation = -4129.286377 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.22293 -40.70653 -39.42800 -37.77649 -36.98242 -36.19301 -34.70634 -32.64400 -32.35042 -32.13678 -30.18763 -28.11607 -27.25251 -26.70412 -24.53559 -23.84129 -22.98179 -22.54668 -21.99502 -21.09014 -20.48804 -19.11476 -18.73006 -18.25574 -17.92682 -17.41718 -16.98899 -16.76418 -16.39378 -15.78383 -15.60520 -15.33570 -15.18135 -15.02718 -14.76751 -14.53801 -14.47811 -14.09134 -13.91908 -13.78371 -13.68912 -13.59176 -13.34009 -13.01509 -13.00674 -12.95666 -12.95440 -12.63039 -12.52087 -12.33705 -12.25321 -11.98286 -11.91730 -11.83271 -11.75771 -11.60585 -11.55192 -11.44940 -11.38815 -11.10933 -10.94199 -10.49352 -10.13055 -8.73777 -7.91026 -5.27614 0.94922 1.04041 1.46202 1.50014 1.57922 1.80609 2.18107 2.51843 3.20860 3.26623 3.55275 3.58999 3.65758 3.90280 3.96616 4.00282 4.01014 4.05704 4.07252 4.26295 4.28207 4.35572 4.37321 4.54751 4.57261 4.58573 4.74627 4.79387 4.84285 4.85725 4.87936 4.94926 4.97798 4.99472 5.06917 5.09447 5.13756 5.19848 5.20593 5.30107 5.33234 5.37518 5.37862 5.42966 5.50581 5.52506 5.68457 5.72139 6.35362 6.40800 6.52529 7.07852 7.12509 7.85773 8.39436 9.15388 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011665 B = 0.002735 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.679288 B =10235.314397 C =11053.170276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 O -0.338 6.338 4 C 0.482 3.518 5 O -0.533 6.533 6 C -0.100 4.100 7 H 0.156 0.844 8 C 0.534 3.466 9 O -0.562 6.562 10 N -0.713 5.713 11 C 0.138 3.862 12 C -0.101 4.101 13 H 0.073 0.927 14 C -0.097 4.097 15 C -0.129 4.129 16 C 0.174 3.826 17 N -0.607 5.607 18 C -0.268 4.268 19 H 0.070 0.930 20 C -0.043 4.043 21 N -0.925 5.925 22 Si 0.954 3.046 23 H -0.289 1.289 24 H -0.298 1.298 25 H -0.264 1.264 26 C 0.154 3.846 27 C -0.068 4.068 28 C -0.150 4.150 29 C -0.150 4.150 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.410 0.590 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.053 0.947 42 H -0.003 1.003 43 H 0.040 0.960 44 H 0.250 0.750 45 H 0.010 0.990 46 H 0.058 0.942 47 H 0.066 0.934 48 H 0.072 0.928 49 H 0.073 0.927 50 H 0.073 0.927 51 H 0.040 0.960 52 H 0.078 0.922 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.212 -8.953 -15.136 23.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.025 4.025 3 O -0.255 6.255 4 C 0.325 3.675 5 O -0.422 6.422 6 C -0.122 4.122 7 H 0.174 0.826 8 C 0.319 3.681 9 O -0.441 6.441 10 N -0.365 5.365 11 C 0.014 3.986 12 C -0.121 4.121 13 H 0.091 0.909 14 C -0.135 4.135 15 C -0.168 4.168 16 C 0.048 3.952 17 N -0.330 5.330 18 C -0.398 4.398 19 H 0.087 0.913 20 C -0.240 4.240 21 N -0.570 5.570 22 Si 0.782 3.218 23 H -0.216 1.216 24 H -0.225 1.225 25 H -0.189 1.189 26 C 0.029 3.971 27 C -0.087 4.087 28 C -0.207 4.207 29 C -0.207 4.207 30 H 0.115 0.885 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.247 0.753 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.015 0.985 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.028 0.972 46 H 0.077 0.923 47 H 0.085 0.915 48 H 0.091 0.909 49 H 0.092 0.908 50 H 0.092 0.908 51 H 0.059 0.941 52 H 0.097 0.903 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.528 -9.232 -15.759 23.973 hybrid contribution 0.200 -0.014 1.572 1.585 sum -15.328 -9.246 -14.188 22.841 Atomic orbital electron populations 1.21823 0.89932 1.04375 1.04032 1.23371 0.97348 0.79207 1.02532 1.86562 1.22289 1.33454 1.83152 1.23142 0.81502 0.91185 0.71668 1.90731 1.61301 1.43946 1.46254 1.21539 0.91713 0.92410 1.06579 0.82611 1.20012 0.89097 0.75317 0.83650 1.90673 1.70857 1.49902 1.32668 1.46011 1.08012 1.73724 1.08710 1.21295 0.78860 1.01767 0.96640 1.21722 0.97062 0.99416 0.93940 0.90888 1.21333 0.93729 1.02100 0.96361 1.21977 1.00140 0.98264 0.96423 1.20573 0.83513 0.93011 0.98133 1.44329 1.03073 1.82724 1.02869 1.19447 0.96176 1.30904 0.93241 0.91275 1.25640 0.99873 0.96030 1.02455 1.70318 1.30560 1.26331 1.29797 0.85460 0.78689 0.76739 0.80890 1.21636 1.22484 1.18872 1.21010 0.96654 0.93773 0.85704 1.20906 0.98014 0.96392 0.93422 1.22030 0.91701 1.03488 1.03491 1.21900 0.99780 0.95436 1.03625 0.88457 0.90995 0.90842 0.91523 0.91417 0.75328 0.91617 0.91676 0.90426 0.92286 0.91049 0.92822 0.98463 0.94152 0.94139 0.97231 0.92327 0.91529 0.90927 0.90836 0.90809 0.94128 0.90346 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 10.29 71.98 0.74 -0.47 16 2 C 0.05 0.73 6.19 71.98 0.45 1.17 16 3 O -0.34 -6.13 7.43 -51.37 -0.38 -6.51 16 4 C 0.48 11.30 7.23 71.23 0.51 11.82 16 5 O -0.53 -16.51 15.78 21.97 0.35 -16.17 16 6 C -0.10 -2.10 2.24 -12.29 -0.03 -2.12 16 7 H 0.16 2.30 8.13 -2.39 -0.02 2.29 16 8 C 0.53 14.84 5.00 87.66 0.44 15.28 16 9 O -0.56 -19.55 15.40 -3.04 -0.05 -19.60 16 10 N -0.71 -18.78 5.33 -463.06 -2.47 -21.24 16 11 C 0.14 3.90 5.07 86.38 0.44 4.34 16 12 C -0.10 -3.15 2.38 -10.72 -0.03 -3.18 16 13 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 14 C -0.10 -2.98 5.17 30.62 0.16 -2.82 16 15 C -0.13 -4.63 6.08 30.67 0.19 -4.44 16 16 C 0.17 8.17 5.43 86.36 0.47 8.64 16 17 N -0.61 -29.37 2.99 -699.11 -2.09 -31.46 16 18 C -0.27 -14.28 9.50 84.03 0.80 -13.48 16 19 H 0.07 3.55 7.97 -2.91 -0.02 3.53 16 20 C -0.04 -2.37 4.58 84.86 0.39 -1.98 16 21 N -0.93 -54.49 11.92 21.65 0.26 -54.23 16 22 Si 0.95 43.89 29.64 68.60 2.03 45.93 16 23 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 24 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 25 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 26 C 0.15 5.95 5.60 86.36 0.48 6.44 16 27 C -0.07 -1.25 2.13 -10.79 -0.02 -1.28 16 28 C -0.15 -1.92 8.87 71.98 0.64 -1.29 16 29 C -0.15 -2.75 8.79 71.98 0.63 -2.12 16 30 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 34 H 0.07 1.07 8.13 -2.39 -0.02 1.05 16 35 H 0.41 9.50 7.70 -92.71 -0.71 8.79 16 36 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 43 H 0.04 2.15 6.35 -2.39 -0.02 2.13 16 44 H 0.25 14.24 8.31 -92.70 -0.77 13.47 16 45 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.06 2.13 7.13 -2.39 -0.02 2.11 16 47 H 0.07 1.46 8.05 -2.39 -0.02 1.44 16 48 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.07 0.78 8.14 -2.38 -0.02 0.77 16 50 H 0.07 0.99 5.51 -2.38 -0.01 0.97 16 51 H 0.04 0.97 6.41 -2.38 -0.02 0.95 16 52 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 53 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -71.95 416.45 4.08 -67.87 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.16 Total: 20.91 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 6.26 Total: 14.50 kcal Atomic # 7 Polarization: -102.64 SS G_CDS: -4.30 Total: -106.94 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -0.08 Total: -42.28 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.93 kcal Total: -71.95 4.08 -67.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878948804.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.967 kcal (2) G-P(sol) polarization free energy of solvation -71.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds