Wall clock time and date at job start Sat Apr 11 2020 06:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34236 * 116.99825 * 2 1 4 4 O 1.20825 * 119.99842 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99723 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47117 * 179.97438 * 5 3 2 7 7 N 1.46504 * 109.47284 * 179.97438 * 6 5 3 8 8 C 1.36936 * 119.99951 * 274.32879 * 7 6 5 9 9 H 1.07994 * 120.00079 * 337.81049 * 8 7 6 10 10 C 1.38819 * 119.99548 * 157.81318 * 8 7 6 11 11 N 1.31612 * 120.00393 * 7.72926 * 10 8 7 12 12 Si 1.86802 * 119.99523 * 187.72420 * 10 8 7 13 13 H 1.48498 * 109.47346 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46780 * 120.00291 * 12 10 8 15 15 H 1.48502 * 109.47226 * 239.99854 * 12 10 8 16 16 C 1.46502 * 119.99658 * 94.32862 * 7 6 5 17 17 C 1.50709 * 109.46779 * 269.99833 * 16 7 6 18 18 O 1.21283 * 120.00106 * 0.02562 * 17 16 7 19 19 N 1.34772 * 119.99587 * 180.02562 * 17 16 7 20 20 C 1.46502 * 120.00580 * 0.02562 * 19 17 16 21 21 C 1.46504 * 120.00060 * 180.02562 * 19 17 16 22 22 C 1.52998 * 109.47032 * 270.00162 * 21 19 17 23 23 C 1.52992 * 109.47257 * 294.99743 * 22 21 19 24 24 C 1.52998 * 109.47257 * 179.97438 * 23 22 21 25 25 C 1.53004 * 109.46863 * 60.00026 * 24 23 22 26 26 C 1.52994 * 109.46998 * 299.99689 * 25 24 23 27 27 C 1.52998 * 109.47060 * 60.00431 * 26 25 24 28 28 H 1.09010 * 109.47398 * 300.00169 * 1 2 3 29 29 H 1.08998 * 109.47155 * 60.00088 * 1 2 3 30 30 H 1.08999 * 109.47335 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47517 * 59.99558 * 5 3 2 32 32 H 1.09006 * 109.47574 * 299.99567 * 5 3 2 33 33 H 1.09005 * 109.46811 * 60.00332 * 6 5 3 34 34 H 1.08995 * 109.47375 * 299.99936 * 6 5 3 35 35 H 0.96993 * 120.00205 * 180.02562 * 11 10 8 36 36 H 1.08999 * 109.47160 * 150.00122 * 16 7 6 37 37 H 1.09000 * 109.47372 * 29.99580 * 16 7 6 38 38 H 1.08999 * 109.47014 * 270.00310 * 20 19 17 39 39 H 1.09003 * 109.46802 * 29.99450 * 20 19 17 40 40 H 1.08992 * 109.47687 * 149.99764 * 20 19 17 41 41 H 1.09006 * 109.46423 * 29.99873 * 21 19 17 42 42 H 1.08994 * 109.47435 * 149.99885 * 21 19 17 43 43 H 1.09005 * 109.46973 * 55.00072 * 22 21 19 44 44 H 1.09005 * 109.46883 * 299.99968 * 23 22 21 45 45 H 1.09001 * 109.47138 * 60.00044 * 23 22 21 46 46 H 1.08994 * 109.47595 * 300.00024 * 24 23 22 47 47 H 1.09005 * 109.47254 * 179.97438 * 24 23 22 48 48 H 1.09004 * 109.46574 * 179.97438 * 25 24 23 49 49 H 1.08996 * 109.47077 * 60.00426 * 25 24 23 50 50 H 1.08994 * 109.47200 * 299.99842 * 26 25 24 51 51 H 1.09001 * 109.46973 * 180.02562 * 26 25 24 52 52 H 1.09005 * 109.47254 * 179.97438 * 27 26 25 53 53 H 1.09005 * 109.47148 * 59.99871 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4631 2.8188 -0.0011 8 6 6.1515 2.7657 1.1815 9 1 5.6572 3.0248 2.1061 10 6 7.4846 2.3789 1.1918 11 7 8.1298 2.2106 0.0570 12 14 8.3629 2.0974 2.8162 13 1 7.4230 2.3509 3.9376 14 1 8.8443 0.6942 2.8820 15 1 9.5196 3.0229 2.9204 16 6 6.1896 2.9523 -1.2662 17 6 6.5129 1.5831 -1.8067 18 8 6.1698 0.5933 -1.1955 19 7 7.1833 1.4586 -2.9692 20 6 7.5982 2.6542 -3.7073 21 6 7.4971 0.1277 -3.4950 22 6 8.8564 -0.3252 -2.9582 23 6 9.9517 0.5937 -3.5029 24 6 11.3109 0.1412 -2.9656 25 6 11.5827 -1.2967 -3.4122 26 6 10.4874 -2.2156 -2.8674 27 6 9.1282 -1.7631 -3.4047 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.9557 0.7809 -0.8908 32 1 3.9564 0.7807 0.8892 33 1 3.6107 3.2364 0.8890 34 1 3.6101 3.2360 -0.8910 35 1 9.0612 1.9400 0.0642 36 1 7.1144 3.5041 -1.0977 37 1 5.5715 3.4901 -1.9852 38 1 6.8106 2.9433 -4.4030 39 1 7.7807 3.4688 -3.0063 40 1 8.5120 2.4402 -4.2615 41 1 6.7284 -0.5779 -3.1796 42 1 7.5307 0.1657 -4.5837 43 1 8.8509 -0.2782 -1.8692 44 1 9.9570 0.5466 -4.5919 45 1 9.7582 1.6180 -3.1844 46 1 11.3052 0.1885 -1.8767 47 1 12.0913 0.7956 -3.3541 48 1 12.5513 -1.6189 -3.0298 49 1 11.5885 -1.3440 -4.5011 50 1 10.4818 -2.1683 -1.7785 51 1 10.6813 -3.2401 -3.1852 52 1 8.3479 -2.4180 -3.0169 53 1 9.1339 -1.8105 -4.4937 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879473441.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:08 Heat of formation + Delta-G solvation = -126.289755 kcal Electronic energy + Delta-G solvation = -32198.888630 eV Core-core repulsion = 28070.450037 eV Total energy + Delta-G solvation = -4128.438593 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.45201 -40.58879 -39.18961 -37.74590 -37.08531 -35.80352 -33.90592 -32.67783 -31.65712 -31.46811 -29.07363 -28.43765 -27.82202 -26.21474 -25.45638 -23.45261 -23.11796 -22.18405 -21.42659 -20.56642 -19.85514 -18.86620 -18.42497 -17.57436 -17.54142 -17.24991 -16.90896 -16.61848 -16.40695 -15.74753 -15.35204 -15.18537 -15.11485 -14.88100 -14.79284 -14.52488 -14.28985 -13.86937 -13.71583 -13.50518 -13.32782 -13.30387 -13.18015 -12.93400 -12.88335 -12.85063 -12.75082 -12.66677 -12.36550 -12.30284 -12.00579 -11.97274 -11.96377 -11.80962 -11.74613 -11.59509 -11.47809 -11.30646 -11.03588 -10.82766 -10.72488 -10.03722 -9.05005 -8.75444 -7.82679 -5.23564 1.18197 1.42307 1.48406 1.53993 1.83262 2.44991 2.52262 2.78035 3.39377 3.64622 3.81410 3.91009 3.95475 4.05971 4.20168 4.23022 4.31277 4.33421 4.37923 4.38939 4.48263 4.54458 4.60159 4.61674 4.66230 4.68088 4.69852 4.74713 4.78141 4.84611 4.85677 4.97428 5.01108 5.06556 5.10267 5.12989 5.17257 5.24571 5.27139 5.36565 5.38266 5.42369 5.43884 5.51667 5.59188 5.66414 5.70064 6.18566 6.36314 6.75323 6.98771 7.22100 7.81731 8.13093 8.28636 9.18748 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010057 B = 0.003878 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.345810 B = 7217.820746 C = 8498.469899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.372 6.372 3 C 0.472 3.528 4 O -0.536 6.536 5 C -0.116 4.116 6 C 0.169 3.831 7 N -0.587 5.587 8 C -0.257 4.257 9 H 0.070 0.930 10 C -0.027 4.027 11 N -0.901 5.901 12 Si 0.954 3.046 13 H -0.273 1.273 14 H -0.307 1.307 15 H -0.288 1.288 16 C 0.166 3.834 17 C 0.533 3.467 18 O -0.582 6.582 19 N -0.627 5.627 20 C 0.084 3.916 21 C 0.130 3.870 22 C -0.091 4.091 23 C -0.102 4.102 24 C -0.119 4.119 25 C -0.110 4.110 26 C -0.118 4.118 27 C -0.106 4.106 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.130 0.870 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.244 0.756 36 H 0.103 0.897 37 H 0.050 0.950 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.082 0.918 41 H 0.045 0.955 42 H 0.093 0.907 43 H 0.023 0.977 44 H 0.079 0.921 45 H 0.054 0.946 46 H 0.029 0.971 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.079 0.921 50 H 0.033 0.967 51 H 0.076 0.924 52 H 0.046 0.954 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.079 -4.247 -12.200 12.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.289 6.289 3 C 0.316 3.684 4 O -0.426 6.426 5 C -0.157 4.157 6 C 0.042 3.958 7 N -0.307 5.307 8 C -0.387 4.387 9 H 0.087 0.913 10 C -0.223 4.223 11 N -0.548 5.548 12 Si 0.785 3.215 13 H -0.198 1.198 14 H -0.236 1.236 15 H -0.215 1.215 16 C 0.036 3.964 17 C 0.323 3.677 18 O -0.461 6.461 19 N -0.363 5.363 20 C -0.059 4.059 21 C 0.007 3.993 22 C -0.110 4.110 23 C -0.139 4.139 24 C -0.156 4.156 25 C -0.147 4.147 26 C -0.156 4.156 27 C -0.144 4.144 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.148 0.852 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.121 0.879 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.111 0.889 43 H 0.042 0.958 44 H 0.098 0.902 45 H 0.072 0.928 46 H 0.048 0.952 47 H 0.090 0.910 48 H 0.082 0.918 49 H 0.098 0.902 50 H 0.052 0.948 51 H 0.094 0.906 52 H 0.064 0.936 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.345 -4.456 -11.853 12.668 hybrid contribution 0.487 -0.425 1.515 1.647 sum 0.142 -4.881 -10.339 11.434 Atomic orbital electron populations 1.23552 0.74989 1.05580 1.02590 1.86573 1.25150 1.33388 1.83779 1.24282 0.92353 0.81052 0.70664 1.90578 1.67818 1.36938 1.47253 1.22184 0.84925 1.03505 1.05077 1.20698 0.83438 0.91201 1.00417 1.43979 1.00570 1.83397 1.02739 1.19378 0.93856 1.38571 0.86883 0.91263 1.25431 0.98296 0.99634 0.98923 1.69810 1.09317 1.51508 1.24125 0.85407 0.78476 0.76237 0.81427 1.19828 1.23557 1.21532 1.20806 0.97543 0.92426 0.85586 1.21835 0.74904 0.93144 0.77851 1.90439 1.56251 1.41501 1.57940 1.47919 1.58252 1.06632 1.23447 1.21842 1.00509 0.87139 0.96360 1.21284 0.95287 0.84600 0.98151 1.21359 0.95403 0.95706 0.98578 1.21545 0.93459 0.98551 1.00379 1.21511 0.97476 0.97365 0.99297 1.21489 0.97853 0.93946 1.01447 1.21511 0.95119 0.99729 0.99240 1.21478 0.96763 0.94657 1.01483 0.91926 0.91746 0.85169 0.88751 0.89742 0.93248 0.92252 0.94581 0.87895 0.93253 0.91957 0.92140 0.89957 0.93655 0.88856 0.95834 0.90213 0.92781 0.95179 0.91028 0.91754 0.90234 0.94831 0.90561 0.93561 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.79 16 2 O -0.37 -12.28 10.57 -51.48 -0.54 -12.82 16 3 C 0.47 17.71 7.96 71.23 0.57 18.27 16 4 O -0.54 -21.26 15.73 21.97 0.35 -20.91 16 5 C -0.12 -4.86 5.55 29.85 0.17 -4.70 16 6 C 0.17 7.32 5.01 86.38 0.43 7.75 16 7 N -0.59 -28.74 2.07 -706.31 -1.46 -30.20 16 8 C -0.26 -13.80 9.70 84.04 0.81 -12.99 16 9 H 0.07 3.71 7.84 -2.91 -0.02 3.68 16 10 C -0.03 -1.44 5.41 84.86 0.46 -0.98 16 11 N -0.90 -48.53 8.21 21.65 0.18 -48.35 16 12 Si 0.95 45.70 29.56 68.60 2.03 47.73 16 13 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 14 H -0.31 -15.51 7.11 99.48 0.71 -14.80 16 15 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 16 C 0.17 7.45 4.02 85.64 0.34 7.80 16 17 C 0.53 24.10 5.63 87.66 0.49 24.59 16 18 O -0.58 -30.94 13.47 -3.04 -0.04 -30.98 16 19 N -0.63 -22.45 2.70 -846.75 -2.28 -24.74 16 20 C 0.08 2.30 9.31 127.77 1.19 3.49 16 21 C 0.13 4.17 4.90 86.38 0.42 4.59 16 22 C -0.09 -2.88 2.39 -10.80 -0.03 -2.91 16 23 C -0.10 -2.73 4.19 30.59 0.13 -2.60 16 24 C -0.12 -3.05 5.92 30.59 0.18 -2.87 16 25 C -0.11 -2.34 5.92 30.59 0.18 -2.16 16 26 C -0.12 -2.89 5.92 30.59 0.18 -2.70 16 27 C -0.11 -2.75 5.20 30.59 0.16 -2.59 16 28 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 30 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.09 4.24 6.39 -2.39 -0.02 4.22 16 32 H 0.08 3.84 8.14 -2.38 -0.02 3.82 16 33 H 0.05 2.15 8.03 -2.38 -0.02 2.13 16 34 H 0.06 2.38 7.80 -2.39 -0.02 2.36 16 35 H 0.24 13.32 8.31 -92.71 -0.77 12.55 16 36 H 0.10 5.02 5.50 -2.39 -0.01 5.01 16 37 H 0.05 1.95 7.83 -2.39 -0.02 1.93 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 1.82 6.44 -2.39 -0.02 1.80 16 40 H 0.08 1.85 5.98 -2.39 -0.01 1.84 16 41 H 0.04 1.68 7.42 -2.38 -0.02 1.67 16 42 H 0.09 2.27 8.07 -2.39 -0.02 2.25 16 43 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 44 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 45 H 0.05 1.64 5.89 -2.39 -0.01 1.63 16 46 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 48 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 49 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 52 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 53 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -67.79 408.84 5.98 -61.80 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 0.87 Total: 24.69 kcal Atomic # 6 Polarization: 26.89 SS G_CDS: 6.89 Total: 33.78 kcal Atomic # 7 Polarization: -99.72 SS G_CDS: -3.57 Total: -103.29 kcal Atomic # 8 Polarization: -64.48 SS G_CDS: -0.24 Total: -64.72 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -67.79 5.98 -61.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879473441.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.488 kcal (2) G-P(sol) polarization free energy of solvation -67.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds