Wall clock time and date at job start Sat Apr 11 2020 06:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.46770 * 2 1 4 4 C 1.42899 * 113.99836 * 182.97474 * 3 2 1 5 5 H 1.09000 * 109.47121 * 346.84755 * 4 3 2 6 6 C 1.50702 * 109.47155 * 226.84933 * 4 3 2 7 7 O 1.21277 * 120.00016 * 329.51259 * 6 4 3 8 8 N 1.34773 * 119.99958 * 149.51437 * 6 4 3 9 9 C 1.46969 * 120.59671 * 175.02074 * 8 6 4 10 10 C 1.53368 * 108.63357 * 235.24707 * 9 8 6 11 11 H 1.08999 * 109.75047 * 70.40169 * 10 9 8 12 12 C 1.53002 * 109.60775 * 190.82564 * 10 9 8 13 13 N 1.46956 * 108.63862 * 310.57357 * 10 9 8 14 14 C 1.36941 * 120.59724 * 235.20849 * 13 10 9 15 15 H 1.07992 * 120.00441 * 125.20002 * 14 13 10 16 16 C 1.38814 * 119.99559 * 305.20722 * 14 13 10 17 17 N 1.31623 * 119.99972 * 166.12062 * 16 14 13 18 18 Si 1.86806 * 119.99856 * 346.11441 * 16 14 13 19 19 H 1.48500 * 109.47305 * 273.53941 * 18 16 14 20 20 H 1.48496 * 109.46983 * 33.54911 * 18 16 14 21 21 H 1.48506 * 109.46903 * 153.54082 * 18 16 14 22 22 C 1.46967 * 118.81359 * 55.47628 * 13 10 9 23 23 H 1.09006 * 109.60658 * 64.26675 * 22 13 10 24 24 C 1.52996 * 109.61130 * 184.77910 * 22 13 10 25 25 C 1.46969 * 120.59803 * 355.04036 * 8 6 4 26 26 C 1.53001 * 109.47437 * 106.84691 * 4 3 2 27 27 H 1.08995 * 110.80181 * 65.23636 * 26 4 3 28 28 C 1.54812 * 110.90600 * 301.61180 * 26 4 3 29 29 C 1.54099 * 104.18638 * 220.91901 * 28 26 4 30 30 O 1.43738 * 107.29391 * 357.96841 * 29 28 26 31 31 C 1.44422 * 107.00049 * 26.49272 * 30 29 28 32 32 H 1.08997 * 109.47274 * 299.99844 * 1 2 3 33 33 H 1.09006 * 109.47347 * 59.99739 * 1 2 3 34 34 H 1.08998 * 109.47366 * 179.97438 * 1 2 3 35 35 H 1.08997 * 109.46750 * 240.00110 * 2 1 3 36 36 H 1.09000 * 109.46760 * 119.99931 * 2 1 3 37 37 H 1.08997 * 109.61243 * 115.49964 * 9 8 6 38 38 H 1.09001 * 109.60595 * 354.99031 * 9 8 6 39 39 H 1.09001 * 109.47304 * 179.14538 * 12 10 9 40 40 H 1.08999 * 109.47248 * 299.14902 * 12 10 9 41 41 H 1.09002 * 109.46785 * 59.14719 * 12 10 9 42 42 H 0.96994 * 119.99573 * 179.97438 * 17 16 14 43 43 H 1.09005 * 109.47310 * 64.35303 * 24 22 13 44 44 H 1.09004 * 109.47326 * 184.34570 * 24 22 13 45 45 H 1.09001 * 109.47432 * 304.34925 * 24 22 13 46 46 H 1.09002 * 109.61160 * 244.50011 * 25 8 6 47 47 H 1.09010 * 109.60714 * 5.00444 * 25 8 6 48 48 H 1.09001 * 110.48796 * 339.59927 * 28 26 4 49 49 H 1.09007 * 110.48856 * 102.10897 * 28 26 4 50 50 H 1.08998 * 109.87588 * 117.39547 * 29 28 26 51 51 H 1.08997 * 109.87596 * 238.54325 * 29 28 26 52 52 H 1.09002 * 110.65241 * 201.48226 * 31 30 29 53 53 H 1.08997 * 110.60614 * 78.46895 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4291 1.4608 -0.0677 5 1 3.8809 0.4882 0.1274 6 6 3.9038 2.4512 0.9641 7 8 3.1914 3.3777 1.2882 8 7 5.1200 2.3075 1.5268 9 6 5.6409 3.3235 2.4523 10 6 7.0029 3.8041 1.9364 11 1 6.8659 4.3968 1.0319 12 6 7.6872 4.6543 3.0087 13 7 7.8322 2.6289 1.6351 14 6 9.0684 2.4833 2.2061 15 1 9.3062 1.5857 2.7575 16 6 10.0157 3.4895 2.0762 17 7 11.0900 3.4841 2.8367 18 14 9.7660 4.8512 0.8220 19 1 10.3003 4.4166 -0.4936 20 1 8.3164 5.1469 0.6945 21 1 10.4829 6.0728 1.2683 22 6 7.3138 1.6157 0.7053 23 1 7.1960 2.0546 -0.2855 24 6 8.2865 0.4367 0.6361 25 6 5.9495 1.1323 1.2255 26 6 3.8367 1.9418 -1.4618 27 1 3.4729 2.9530 -1.6441 28 6 3.3297 0.9673 -2.5526 29 6 4.5020 0.8718 -3.5482 30 8 5.5359 1.7519 -3.0765 31 6 5.3737 1.8653 -1.6459 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 5.7583 2.8884 3.4447 38 1 4.9495 4.1649 2.4985 39 1 8.6613 4.9820 2.6457 40 1 7.0702 5.5251 3.2304 41 1 7.8175 4.0614 3.9140 42 1 11.7521 4.1871 2.7456 43 1 8.3360 -0.0511 1.6096 44 1 7.9394 -0.2774 -0.1107 45 1 9.2770 0.7985 0.3601 46 1 6.0889 0.5412 2.1307 47 1 5.4619 0.5265 0.4616 48 1 3.1151 -0.0103 -2.1209 49 1 2.4428 1.3702 -3.0419 50 1 4.8747 -0.1519 -3.5847 51 1 4.1729 1.1841 -4.5392 52 1 5.8502 2.7731 -1.2758 53 1 5.7773 0.9865 -1.1432 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880453088.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:19 Heat of formation + Delta-G solvation = -92.959950 kcal Electronic energy + Delta-G solvation = -33581.855082 eV Core-core repulsion = 29454.861777 eV Total energy + Delta-G solvation = -4126.993305 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.97487 -40.22695 -39.41036 -38.46280 -36.10550 -34.74608 -34.12419 -33.51976 -32.05237 -30.66463 -29.93534 -28.48621 -27.66722 -26.78546 -25.06812 -23.90225 -23.72817 -22.27742 -22.02197 -21.42077 -20.39674 -19.00651 -18.39717 -17.89634 -17.57390 -17.37951 -16.95734 -16.75403 -16.58101 -16.07969 -15.93141 -15.86204 -15.36618 -15.27058 -14.73939 -14.60790 -14.44368 -14.24045 -14.07044 -13.98726 -13.60489 -13.44974 -13.19761 -13.12801 -12.95048 -12.89557 -12.71380 -12.58519 -12.41003 -12.27281 -12.16556 -12.12414 -12.00869 -11.91112 -11.85464 -11.75328 -11.57470 -11.23786 -10.95199 -10.67565 -10.59555 -10.34834 -9.83905 -8.34224 -8.12890 -5.75503 1.33479 1.39754 1.43525 1.48798 1.67738 2.42242 2.63135 2.89017 3.08353 3.20770 3.24564 3.51735 3.65005 3.75466 3.83689 3.94337 4.06858 4.11402 4.14918 4.19330 4.27472 4.30121 4.32609 4.40087 4.40588 4.45252 4.48367 4.63375 4.66064 4.68794 4.75646 4.79142 4.84847 4.85883 4.86600 4.92150 4.99049 5.06035 5.09109 5.12099 5.18241 5.28025 5.30004 5.40960 5.51461 5.66083 5.85201 6.00325 6.05217 6.36434 6.40398 7.03445 7.08588 7.61730 8.18489 9.01258 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014938 B = 0.004234 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.991680 B = 6611.941879 C = 7382.021528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.038 3.962 3 O -0.378 6.378 4 C 0.096 3.904 5 H 0.116 0.884 6 C 0.502 3.498 7 O -0.572 6.572 8 N -0.598 5.598 9 C 0.111 3.889 10 C 0.148 3.852 11 H 0.031 0.969 12 C -0.132 4.132 13 N -0.607 5.607 14 C -0.243 4.243 15 H 0.044 0.956 16 C 0.015 3.985 17 N -0.945 5.945 18 Si 0.913 3.087 19 H -0.306 1.306 20 H -0.233 1.233 21 H -0.307 1.307 22 C 0.137 3.863 23 H 0.045 0.955 24 C -0.126 4.126 25 C 0.090 3.910 26 C -0.129 4.129 27 H 0.074 0.926 28 C -0.135 4.135 29 C 0.038 3.962 30 O -0.398 6.398 31 C 0.048 3.952 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.040 0.960 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.260 0.740 43 H 0.051 0.949 44 H 0.083 0.917 45 H 0.040 0.960 46 H 0.080 0.920 47 H 0.112 0.888 48 H 0.100 0.900 49 H 0.090 0.910 50 H 0.081 0.919 51 H 0.095 0.905 52 H 0.072 0.928 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.722 -11.716 -10.008 24.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.037 4.037 3 O -0.296 6.296 4 C 0.035 3.965 5 H 0.134 0.866 6 C 0.290 3.710 7 O -0.451 6.451 8 N -0.330 5.330 9 C -0.013 4.013 10 C 0.042 3.958 11 H 0.049 0.951 12 C -0.190 4.190 13 N -0.333 5.333 14 C -0.372 4.372 15 H 0.061 0.939 16 C -0.182 4.182 17 N -0.587 5.587 18 Si 0.743 3.257 19 H -0.234 1.234 20 H -0.158 1.158 21 H -0.235 1.235 22 C 0.032 3.968 23 H 0.062 0.938 24 C -0.183 4.183 25 C -0.033 4.033 26 C -0.148 4.148 27 H 0.092 0.908 28 C -0.172 4.172 29 C -0.038 4.038 30 O -0.318 6.318 31 C -0.029 4.029 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.059 0.941 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.101 0.899 45 H 0.060 0.940 46 H 0.099 0.901 47 H 0.129 0.871 48 H 0.119 0.881 49 H 0.108 0.892 50 H 0.099 0.901 51 H 0.113 0.887 52 H 0.090 0.910 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.938 -10.914 -9.898 23.994 hybrid contribution 0.803 1.138 0.029 1.393 sum -18.135 -9.776 -9.869 22.844 Atomic orbital electron populations 1.21757 0.92700 1.03606 1.02547 1.23073 0.96722 0.82155 1.01796 1.88054 1.18065 1.28893 1.94626 1.21837 0.84069 0.98584 0.92044 0.86644 1.21231 0.80907 0.86797 0.82074 1.90647 1.55495 1.35239 1.63730 1.48104 1.16338 1.23546 1.45043 1.22032 0.94999 0.91751 0.92489 1.21222 0.89932 0.88986 0.95627 0.95119 1.21879 0.99270 0.98887 0.98942 1.44518 1.15666 1.22339 1.50805 1.18170 0.88007 1.03871 1.27197 0.93866 1.26319 0.94456 1.00017 0.97444 1.69912 1.12581 1.35404 1.40841 0.86730 0.79993 0.79465 0.79481 1.23439 1.15788 1.23509 1.21524 0.92273 0.90786 0.92239 0.93783 1.21642 0.98673 0.96326 1.01701 1.22790 0.91717 0.86545 1.02226 1.22999 0.96328 1.01626 0.93872 0.90777 1.22982 0.99342 0.99967 0.94935 1.23442 0.86687 0.95022 0.98627 1.88915 1.53223 1.68655 1.20964 1.24045 0.93922 1.02369 0.82518 0.93258 0.91928 0.88450 0.90302 0.92452 0.91054 0.90244 0.94137 0.91491 0.92453 0.93035 0.93037 0.89850 0.94050 0.90142 0.87079 0.88135 0.89155 0.90059 0.88714 0.90981 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.28 71.98 0.74 -1.15 16 2 C 0.04 0.55 6.20 71.98 0.45 1.00 16 3 O -0.38 -8.94 9.41 -132.00 -1.24 -10.18 16 4 C 0.10 2.19 1.75 29.85 0.05 2.25 16 5 H 0.12 1.88 5.40 -2.39 -0.01 1.87 16 6 C 0.50 15.94 6.56 87.66 0.58 16.52 16 7 O -0.57 -23.03 16.17 13.96 0.23 -22.80 16 8 N -0.60 -18.63 2.92 -817.14 -2.39 -21.02 16 9 C 0.11 3.94 5.89 86.41 0.51 4.45 16 10 C 0.15 5.97 2.40 45.03 0.11 6.08 16 11 H 0.03 1.34 6.35 -2.39 -0.02 1.32 16 12 C -0.13 -5.50 7.48 71.98 0.54 -4.96 16 13 N -0.61 -25.63 2.21 -649.91 -1.43 -27.07 16 14 C -0.24 -12.35 7.19 84.03 0.60 -11.74 16 15 H 0.04 2.46 7.52 -2.91 -0.02 2.44 16 16 C 0.02 0.84 4.22 84.86 0.36 1.20 16 17 N -0.94 -56.01 13.97 21.65 0.30 -55.71 16 18 Si 0.91 44.81 24.91 68.60 1.71 46.52 16 19 H -0.31 -15.48 7.11 99.48 0.71 -14.77 16 20 H -0.23 -10.64 4.16 99.48 0.41 -10.23 16 21 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 22 C 0.14 4.57 3.07 45.17 0.14 4.71 16 23 H 0.04 1.51 4.93 -2.38 -0.01 1.49 16 24 C -0.13 -3.94 8.21 71.98 0.59 -3.35 16 25 C 0.09 2.38 4.81 86.56 0.42 2.79 16 26 C -0.13 -2.85 2.86 -9.49 -0.03 -2.87 16 27 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 28 C -0.13 -1.95 6.10 31.58 0.19 -1.76 16 29 C 0.04 0.61 7.70 72.35 0.56 1.17 16 30 O -0.40 -10.08 11.52 -148.98 -1.72 -11.80 16 31 C 0.05 1.16 4.69 72.66 0.34 1.50 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 0.72 5.96 -2.39 -0.01 0.70 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 2.49 8.12 -2.39 -0.02 2.47 16 38 H 0.08 2.88 7.02 -2.39 -0.02 2.86 16 39 H 0.04 1.88 2.64 -2.39 -0.01 1.88 16 40 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 41 H 0.06 2.48 7.91 -2.39 -0.02 2.46 16 42 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 43 H 0.05 1.66 7.73 -2.38 -0.02 1.64 16 44 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.04 1.57 7.50 -2.39 -0.02 1.55 16 46 H 0.08 2.10 8.11 -2.39 -0.02 2.08 16 47 H 0.11 2.06 3.49 -2.38 -0.01 2.05 16 48 H 0.10 0.96 5.73 -2.39 -0.01 0.94 16 49 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 50 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 52 H 0.07 2.19 6.91 -2.39 -0.02 2.17 16 53 H 0.09 1.83 4.74 -2.39 -0.01 1.82 16 Total: -1.00 -71.64 378.70 2.22 -69.42 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.62 Total: 16.80 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 6.14 Total: 15.83 kcal Atomic # 7 Polarization: -100.28 SS G_CDS: -3.52 Total: -103.79 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -2.73 Total: -44.78 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.71 Total: 46.52 kcal Total: -71.64 2.22 -69.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880453088.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.535 kcal (2) G-P(sol) polarization free energy of solvation -71.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds